2.1 Research Subjects
156 consecutive patients with periodontitis, aged between 26 and 86 years old, were recruited to two private periodontal practices in Perth city, Western Australia between June and November 2022 to take part in the present study. For mor information in regarding the recruitment process please refer to the previous published study [12].
2.2 Clinical Examination
Periodontal, radiographic, and photographic examinations were carried out by one experienced periodontist (NK). In each patient, the examination included measurement and scoring of series of different parameters characterizing periodontitis. For mor information in regarding the recruitment process please refer to the previous publish study [12].
2.3 Case Definition of Periodontitis
Cases with periodontitis were defined according to the 2018 classification of periodontal and peri-implant diseases and conditions [12].
2.4 Samples Collection
Samples of unstimulated saliva, cheek swab and subgingival plaque samples were collected from each subject. Subjects were asked to refrain from eating and drinking one hour prior to saliva collection. About 2 ml of expectorated whole saliva will be collected from each subject (156 samples). In each patient’s subgingival plaque samples were collected. The pooled subgingival plaque samples were collected using sterile universal mini-curette after air drying the area carefully and removing any food debris. The subgingival plaque samples were collected from the most apical portion of the accessible pocket depth. For each patient, subgingival plaque samples were collected from four diseased and four health sites (two samples per quadrant). The total number of samples collected was 1248 subgingival plaque samples, these samples were pooled into 156 samples (one sample per patient). Cheek swabs were collected using sterile plastic applicator. All samples were collected in sterile ice-chilled 5.0 ml Eppendorf tubes (Eppendorf South Pacific Pty, Ltd, Australia). 0.9% sodium chloride was used in the Eppendorf tubes as preservative solution. All collected samples were stored immediately in a subzero (minus 20°C) facility on site. A courier with specialized freezing equipment was used for the transportation of the coded samples, all samples were sent from NK Periodontics practices in Western Australia to the Dental School, Department of Odontology, Umeå University, Sweden for subsequent processing and analysis by an experienced team of researchers.
2.5 Bacterial DNA Isolation
For DNA isolation from the samples, a GXT NA Extraction Kit® (Hain Lifescience, GmBH, Nehren, Germany) and an Arrow automated extraction instrument (Liaison IXT, DiaSorin Ltd., Ireland) were used, using procedures described earlier [13].
2.6 Quantification PCR
The amount of total extracted DNA was quantified using a NanoDrop (Thermo Fisher) instrument. For quantification of A. actinomycetemcomitans loads, suspensions of the reference strain HK1651 were treated as described and used for standard curves, i.e., by being serially diluted [13].
A Corbett Research Rotor-Gene 6000 Rotary Analyze instrument (QIAGEN, Valencia, CA, USA) was used for the quantification of the total concentration of A. actinomycetemcomitans loads in the samples, using qPCR. The cycling conditions used were according to Kirakodu method [14]. The oligonucleotide primers used were Forward: (5’-CTAGGTATTGCGAAACAATTTG-3’), and Reverse (5’-CCTGAAATTAAGCTGGTAATC-3’). A load of 100 A. actinomycetemcomitans cells per ml of sample was set as a positive result regarding presence of this bacterium.
2.7 Conventional PCR
For detection of the JP2 genotype, specific oligonucleotide primers targeting the leukotoxin promoter sequence of A. actinomycetemcomians were used [15]. Primers used for detection of the ltx promoter gene of A. actinomycetemcomitans were forward: (GCCGACACCAAAGACAAAGTCT), and Reverse (GCCCATAACCAAGCCACATAC).
2.8 Statistical Analysis
All data collected was coded and entered into a computer using Microsoft Excel (Microsoft Corporation, 2024, Redmond, WA, USA). The collected data was analysed using IBM SPSS Statistics software program version 29.0 (SPSS Inc., Chicago, IL, USA). The primary outcome was the presence of A. actinomycetemcomitans in saliva versus cheek swabs versus subgingival plaque samples using Wilcoxon test and analysis of variance. A descriptive analysis was performed, evaluating quantitative and qualitative variables, and presented in tables. Furthermore, a chi-square test was carried out to evaluate the relationship between different biodata, periodontal, radiographic and A. actinomycetemcomitans presence/absence. Confidence level was set at 95%. The significance level used was 5%. Sample size was calculated according to previous published paper [16].
2.9 Ethical Considerations
The approval to conduct the current study was given by the Human Ethics, Office of Research at The University of Western Australia (2022/ET000252).