Characterization of serum exosomes from TAK patients
The serum exosomes were meticulously purified from TAK patients and healthy individuals were meticulously purified. TEM showed the serum exosomes to exhibit a predominantly cup-shaped or rounded morphology (Fig. 1A). Nanoparticle Flow Cytometry analysis further elucidated the average particle size of exosomes to approximate 86.9 nanometers (Fig. 1B). In addition, the results from Western blotting indicated that these vesicular structures were characterized by the presence of key exosome markers, including CD63, TSG101 and CD9, while conspicuously lacking the expression of Calnexin, a negative exosomal marker (Fig. 1C). Consequently, these observations unequivocally confirmed the identity of the purified particles as exosomes.
The serum exosomes from TAK patients contributed to phenotypic modulation of VSMC.
To investigate the influence of serum exosomes derived from TAK patients on VSMC, we co-cultured immortalized human aortic smooth muscle cells with serum exosomes obtained from five TAK patients and five healthy individuals (Fig. 1D). The qRT-PCR analysis suggested the VSMC con-cultured with exosomes from the TAK cohort exhibited higher expression levels of α-smooth muscle actin (α-SMA), the gene of one of the VSMC cytoskeleton protein (Fig. 1E). These findings indicated that serum exosomes played a role in phenotypic modulation of VSMC. MiRNAs, recognized as integral components of exosomes, have been implicated in the regulation of VSMC (15). To elucidate the mechanisms by which exosome-derived miRNA from TAK patients contributes, we intersected the twelve miRNAs previously identified as downregulated in TAK-derived exosomes (16) with miRNAs related to TAK as cataloged in the miRWalk database (17). This comparison yielded 9 miRNAs as potential candidates for subsequent validation (Fig. 1F). Subsequent qRT-PCR analyses were conducted to quantify the expression of these nine miRNAs (involving miR-1249-3p, miR-141-3p, miR-199a-5p, miR-200a-3p, miR-204-5p, miR-29c-5p, miR-381-3p, miR-4433b-5p and miR-584-5p). Notably, miR-199a-5p exhibited a marked diminution in its expression in TAK patient compared to healthy controls (Fig. 1G). In contrast, the expression profiles of the remaining eight miRNAs did not reveal any significant differences between the TAK and healthy groups (Figure S1).
Furthermore, we interrogated potential functionalities of miR-199a-5p through various databases. Utilizing deepBase v3.0 (18), a comprehensive database detailing human exosome RNA expression profiles, we observed that miR-199a-5p expression levels were predominantly elevated in serum (Fig. 1H). This finding suggests that serum exosomes are the principal conduits for miR-199a-5p activity. Additionally, we performed an enrichment analysis of miR-199a-5p from microRNA-target interactions using starBase (19). Significantly, among the top 15 pertinent pathways identified in the Kyoto Encyclopedia of Genes and Genomes (KEGG), the regulation of the actin cytoskeleton was prominently featured (Fig. 1I), aligning with the results depicted in Fig. 1E. In summary, serum exosomes derived from TAK patients may play a pivotal role in modulating the phenotypic modulation of VSMC.
The overexpression of miR-199a-5p induced dedifferentiation of VSMC from a contractile state into a synthetic phenotype.
In order to investigate the hypothesis that miR-199a-5p influences VSMC phenotype transition, we transfected VSMC with either miR-199a-5p mimics or miR-199a-5p inhibitors, and subsequently subjected these transfected cells to a series of analyses (Fig. 2A). RT-qPCR results revealed a significant upregulation of miR-199a-5p expression in VSMCs treated with miR-199a-5p mimics, and a downregulation in those treated with the miR-199a-5p inhibitor (Fig. 2B), confirming the efficacy of the transfection process. Overexpression of miR-199a-5p induced cytoskeletal reorganization in VSMC, as evidenced by an increased mount of cells exhibiting well-defined α-SMA stress fibers (Fig. 2E). These morphological changes strongly imply that miR-199a-5p modulates the differentiation state of VSMC. Further analysis of VSMC differentiation markers, including Calponin 1 (Cnn1), α-SMA and Transgelin (TAGLN) through western blotting (Fig. 2C, Figure S2) and RT-qPCR (Fig. 2D) corroborated this hypothesis. Additionally, other genes pivotal for VSMC differentiation, such as Myosin Heavy Chain 11 (Myh11), Serum Response Factor (SRF), Myocardin (Myocd) and Smoothelin (SMTN), also exhibited significant upregulation (Fig. 2D). These data suggested that the overexpression of miR-199a-5p induced dedifferentiation of VSMC from a contractile state into a synthetic phenotype.
The overexpression of miR-199a-5p inhibit the proliferation and migration of VSMC.
The proliferation and migration of VSMC are pivotal in intimal remodeling of the artery wall. Thus, undertook a comprehensive investigation into the influence of miR-199a-5p on VSMC proliferative and migratory function. Western blot analysis disclosed a diminished expression of Proliferating Cell Nuclear Antigen (PCNA) in VSMC upon miR-199a-5p overexpression, whereas there was an elevated PCNA level in the miR-199a-5p inhibitor group (Fig. 3A-3B). In CCK8 assays, the knockout of miR-199a-5p VSMC exhibited increased cell viability compared to negative control (Fig. 3C), suggesting the inhibitory capacity of miR-199a-5p mimics. In a consistent manner, EdU incorporation assays revealed that miR-199a-5p negatively regulates cell proliferation. Beyond the realm of VSMC proliferation, miR-199a-5p overexpression notably impeded VSMC migration, as evidenced by scratch assays (Fig. 3F-3G) and transwell migration assays (Fig. 3H-3I). In summation, these results substantiate the prospective role of miR-199a-5p as a therapeutic target for mitigating the degradation of arterial wall integrity.
The apoptosis of VSMC is inhibited by miR-199a-5p mimics.
Beyond the VSMC migration and proliferation, the reduction in VSMC within the aorta's medial layer, resulting from apoptosis, serves as an initial warning sign of aortic aneurysm formation (20). Besides, aortic aneurysms serve as a severe complication associated with TAK and intimately linked to disease's unfavorable prognosis. Therefore, we explored the potential roles of miR-199a-5p in modulating VSMC apoptosis. Results from flow cytometry revealed that the proportions of apoptotic VSMC were greatly reduced upon miR-199a-5p overexpression, whereas there was an elevated apoptotic level in the miR-199a-5p inhibitor group (Fig. 2F). These findings suggest that miR-199a-5p may mitigate aneurysm formation by suppressing VSMC apoptosis.
MMP2 serve as functional target gene of miR-199a-5p.
The above results showed the important role of miR-199a-5p in the vascular remodeling, while what’s the underlying mechanism of miR-199a-5p is not exactly known. To further investigate how miR-199a-5p functions, 9 genes in common related to TAK were first collected from the four databases, CTD, GENE, DisGeNET and GeneCards (Figure S3A). Next, four miRNA target predicting databases, including miRWalk, ENCORI, miRPathDB and miRDB, were used to intersect with the TAK-related genes (Fig. 4A) and MMP2 was ultimately analyzed as the sole target gene of miR-199a-5p. For the validation of the predicting result, the transcriptional level (Fig. 4B) and protein expression level (Fig. 4C, S3B) of MMP2 were measured after overexpression and inhibition of miR-199a-5p, which showed that miR-199a-5p significantly restrained the expression of MMP2 at transcription and protein expression level. To further clarify the specific binding sites of MMP2, the binding region and binding sites were predicted by ENCORI database and then the plasmids for the dual luciferase assay were designed (Fig. 4D). After co-transfecting Luc-MMP2-wt and Luc-MMP2-mut with miR-199a-5p mimics in HEK293T cells, the dual luciferase reporter assays revealed that the luciferase activity decreased after co-transfecting Luc-MMP2-wt with miR-199a-5p mimics (Fig. 4E), while the luciferase activity didn’t change (with no statistical significance) in the cells co-transfected with Luc-MMP2-mut and miR-199a-5p mimics. The results indicated the binding between MMP2 and miR-199a-5p. Furthermore, the binding relationship was also validated by the confocal microscopy analysis. The FISH assay was used to display the location of the MMP2 mRNA (FISH probe labeled with CY5) and FAM-labeled miR-199a-5p was transfected into the VSMC cells. Imaged by the confocal microscopy, it is shown that miR-199a-5p bound to MMP2 mRNA (the yellow points) in cytoplasm (Fig. 5F). AGO2, the key regulator for the competing endogenous RNA regulation, recognizes and degrades the miRNA binding complex (insert a reference). In the present study, the AGO2 recognition of miRNA binding complex containing MMP2 was also measured by AGO2-RIP (Fig. 5G), which showed that MMP2 mRNA enriched in the AGO2-beads (Fig. 5H-I). The results indicated that after the binding of miR-199a-5p and MMP2 mRNA, AGO2 recognized the binding complex and eventually leaded to the degradation of MMP2 mRNA, which replenished the entire regulatory process of miR-199a-5p on MMP2. Taken together, the present study revealed the binding and relevant regulatory modes of miR-199a-5p and MMP2 mRNA for the first time in TAK.
between active and stable groups showed no significant difference. G Correlation analysis of serum MMP2 and Vascular Damage Index. H Levels of serum TIMP2 between TAK patients and healthy controls showed no significant difference. I The ratio of MMP2/TIM2 level between TAK patients and healthy controls showed no significant difference. All correlation analyses mentioned above were assessed using Spearman's correlative analysis. TAK: Takayasu’s arteritis; HC: healthy control; ESR: erythrocyte sedimentation rate; CRP: C-reactive protein; MMP2: matrix metalloproteinase-2; TIMP2: tissue inhibitor of metalloproteinases-2. ns: P > 0.05; **P ≤ 0.01.
Exosome miR-199a-5p and serum MMP2 serve as vasculitis damage biomarkers in TAK.
We have previously elucidated that exosome miR-199a-5p is downregulated in TAK and involved in the process of vascular injury and remodeling. Given that TAK is a form of idiopathic inflammatory disorder marked by vascular fibrosis, it is postulated that serum miR-199a-5p could potentially serve as a marker for overall fibrotic activity. To explore this hypothesis, we performed a correlation analysis between miR-199a-5p levels and clinical indicators of vascular damage. Our findings revealed an inverse correlation between the relative exosome miR-199a-5p level and the Vasculitis Damage Index (VDI) (R2 = 0.4120, P = 0.0041; Fig. 5A), suggesting that exosome miR-199a-5p might be utilized as a biomarker for vasculitis damage in TAK. Consistently, we observed an inverse relationship between exosome miR-199a-5p level and the duration of the disease (R2 = 0.5699, P = 0.0003; Fig. 5B). The chronicity of the disease can partially reflect the repair and fibrotic processes associated with vasculitis. Patients were stratified into stable and active cohorts based on disease activity. Notably, there was no significant disparity in the relative miR-199a-5p levels between these two groups (P = 0.2436, Fig. 5E). Furthermore, no discernible correlations were found between the exosome miR-199a-5p level and the ESR (R2 = 0.0084, P = 0.6997; Fig. 5C) or CRP (R2 = 0.0446, P = 0.3712; Fig. 5D). These findings indicate that exosome miR-199a-5p is not intimately associated with systemic inflammatory responses.
We have elucidated the potential role of MMP2 as a miRNA target at the tissue level. Given that several studies have reported dysregulation of serum MMPs, we proceeded to verify the levels of serum MMP2 and TIMP2 in our cohort. While no significant disparity in MMP2 levels was discerned between patients with active and inactive disease states (P = 0.8690, Figure S4), serum MMP2 levels were notably diminished in TAK patients relative to healthy controls (P = 0.0072, Fig. 5F). Furthermore, the serum concentration of MMP2 exhibited a negative correlation with VDI (R2 = 0.2469, P = 0.0098; Fig. 5G). In addition, the precise role of TIMP-2, an inherent suppressor of MMP2's proteolytic functions, remains contentious in the context of TAK. Our findings suggest that no significant variance exists in serum TIMP2 level (P = 0.3044, Fig. 5H) and MMP2/TIMP2 equilibrium (P = 0.1630, Fig. 5I) between TAK patients and healthy subjects.