Infertility, defined (according to WHO) as the failure of reproduction after one year of regular intercourse without the use of contraception, is one of the major global health and social problems that affects 10–15% of couples of reproductive age (in Poland: 20% of couples, 1.5 million) [1, 2].
It is estimated that in 30–50% of cases, the causes of infertility are identified in women, 20–30% in men, while the problem affect both partners in approximately 20–30% of the couples [3]. Infertility is a multifactorial disease that can be caused by a number of reasons, including: abnormal gametogenesis, disorders of the structure and function of the reproductive system systemic diseases, including immunological disorders, infections, environmental factors, mental and genetic factors. Idiopathic infertility affects approximately 20–40% of couples. It is estimated that genetic disorders are the cause of approximately 50% of them, although the exact role of genetic factors in infertility is still unknown [3].
In both men and women, standard genetic tests towards infertility include karyotype assessment and, in the case of men with azoospermia/oligozoospermia, also analysis of the deletion of the AZF region of the Y chromosome and examination of pathogenic variants in CFTR gene [3]. Deletions of the AZF region of the Y chromosome are identified in 5–10% of men with azoospermia/oligozoospermia, while pathogenic variants of the CFTR gene in 6% of all infertile men and 60–70% of men with CBAVD [4]. However, according to literature data, about 30 genes are known to be associated with abnormal semen parameters in men (i.e. azoospermia, oligozoospermia, asthenozoospermia, or teratozoospermia) [5]. This number will certainly increase in the future, taking into account that approximately 2,000 genes are involved in the process of spermatogenesis, 600–900 of which are expressed in male sex cells exclusively [6].
Abnormal human spermatogenesis can be also caused by defects in androgen action and androgen insensitivity. Androgen Insensitivity Syndrome (AIS) is a disorder of male sexual development resulting in a wide range of clinical phenotypes and typically classified into three main types based on the degree of androgen receptor dysfunction and the resulting phenotypic characteristics. These types include complete androgen insensitivity syndrome (CAIS), partial androgen insensitivity syndrome (PAIS), and mild or minimal androgen insensitivity syndrome (MAIS). A variety of pathogenic variants have been described in the human androgen receptor gene (AR) associated with male infertility. Due to these molecular defects the androgen receptor becomes less responsive or completely unresponsive to androgens affecting sexual development and spermatogenesis [7].
The infertility can be also associated with endocrine disorders such as hypogonadism, in which the gonads do not function properly and produce inadequate amount of sex hormones There are two main categories of hypogonadism: hypogonadotropic and hypergonadotropic. Hypogonadotropic hypogonadism is characterized by low levels of sex hormones in males or females due to insufficient stimulation of the gonads by the pituitary gland and hypothalamus. Genetic causes of hypogonadotropic hypogonadism can result from mutations in genes involved in the development and functioning of these regulatory systems. Congenital hypogonadotropic hypogonadism (CHH) is a rare disorder (occurs in 1–10/100,000 infertile men) caused by the failure of the normal episodic gonadotropin-releasing hormone (GnRH) secretion, leading to delayed puberty and infertility [10]. Most of the genes mutated in CHH encode receptor-ligand pairs including GNRHR (gonadotropin-releasing hormone receptor) and GNRH1 (gonadotropin-releasing hormone 1), PROKR2 (Prokineticin receptor2) and PROK2 (Prokineticin 2), KISS1R (KiSS1 receptor) and KISS1, TACR3 (Tachykinin Receptor 3) and TAC3 (Tachykinin 3), FGFR1 (Fibroblast Growth Factor Receptor 1) and FGF8 (Fibroblast Growth Factor 8) suggesting that multiple receptor-ligand-encoding gene networks are involved in the molecular pathology of the disease. Part of the cases with CHH demonstrate an impairment sense of smell, called also Kallmann syndrome, in which pathogenic variants in genes such as ANOS1 (KAL1) (Anosmin 1), HS6ST1 (Heparan Sulfate 6-O-Sulfotransferase 1), SPRY4 (Sprouty RTK Signaling Antagonist 4), DUSP6 (Dual Specificity Phosphatase 6) are also identified [8]. The CHH is one of the few treatable causes of male infertility. Diagnosis of CHH is, however, challenging, especially in early adolescence where the clinical features mimics that of constitutional delay of growth and puberty. Timely diagnosis is essential for a proper treatment. Pathogenic variants, in more than 30 genes, has been associated with CHH, acting either alone or in combination [5].
Hypergonadotropic hypogonadism, also known as primary hypogonadism, is characterized by low levels of sex hormones accompanied by elevated levels of gonadotropins (FSH and LH). This condition can result from various genetic defects that directly affect the gonads. Some of the main genetic causes of hypergonadotropic hypogonadism involve mutations in genes such as FSHR (Follicle-Stimulating Hormone Receptor), LHR (Luteinizing Hormone Receptor), INSL3 (Insulin-Like 3), NR5A1 (Nuclear Receptor Subfamily 5 Group A Member 1) [5].
Identification of the causes of infertility is of paramount importance for each couple, due to several of the following reasons: the choice of therapy, genetic counselling, including determination of the risk of having offspring with cystic fibrosis (patients with CBAVD) or with deletion of the AZF region of the chromosome Y, improving mental comfort related to regaining hope for further effective treatment. Sometimes it may help to make decisions such as discontinue therapy and choosing alternative options (use of donor sperm, adoption, etc.).
In recent years, thanks to the use of next generation sequencing (NGS), more and more genes have been described in the context of fertility disorders. However, still in only 4% of all infertile men the genetic cause is established, and majority of the cases are classified as unexplained. This is partly due to a delay to adopt NGS techniques in the field of diagnostics and the lack of genotype–phenotype correlations data [5]. Therefore, the objective of the study was to identify genetic variants associated with isolated infertility using NGS technique. Secondary aim was to describe genotype-phenotype correlations.