2.1 Chemicals and growth medium
p-chloroaniline (PCA) (CAS# 106-47-8, purity > 99.5%), purchased from Sigma-Aldrich USA, was dissolved in sterilized deionized water to obtain a stock solution of 10 mM. The other chemicals and reagents, including K2HPO4, KH2PO4, NH4Cl, MgSO4.7H2O, MnSO4, and glucose, were supplied by Tianjin Kemiou Chemical Reagent Co., Ltd., China.
The mineral growth medium was prepared with some modifications according to the methods reported by Różalska et al. (2010). Specifically, its composition was as follows (g/L): K2HPO4 (4.36), KH2PO4 (1.7), NH4Cl (2.1), MgSO4·7H2O (0.2), MnSO4 (0.05), FeSO4·7H2O (0.01), CaCl2·2H2O (0.03), glucose (20) and dH2O (up to 1000 mL). Integer 25.0 mL was added to each 100 mL Erlenmeyer flask followed by sterilization at 121 ℃ for 20 min.
2.2 Preparation of Fungal conidia inoculum
Fungus, Isaria fumosorosea strain SP535, originally isolated from soil and deposited to the collection at Key Laboratory of Biopesticides Innovation and Application of Guangdong Province, South China Agricultural University, Guangzhou, P. R. China, was used during these studies. SP535 was incubated on PDA slants for 14 d at 25 ℃ to allow sufficient spore production. Then the fungal conidia cultured on PDA slants were harvested with sterilized deionized water containing 0.01% Tween 80 and sieved using filter paper (Whatman No. 2; Science Kit & Boreal Laboratories, New York, NY, USA) into sterile vials. Conidia were counted using a compound microscope and a hemocytometer (0.0625 m2; Fuchs-Rosenthal Merck Euro Lab, Darmstadt, Germany) to calibrate a suspension of 1×108 conidia mL–1.
2.3 Determination of the degradation capacity of SP535 on PCA
To determine the degradation capacity of SP535 to PCA, the growth medium prepared as per section 2.1 was added into 100 mL conical bottle, and the PCA stock solution was added to make the final PCA concentration reach 1.0 mM, the pH was adjusted to 7.0, 2 mL fungal conidia inoculum prepared as per section 2.2 was added. Then the conical bottle was cultured in the constant temperature shaker at 180 rpm and 25 ℃ for 120 h. PCA concentration was measured with 2 mL samples taken every 24 h. The culture samples (2.0 mL) were taken from each treatment at 24 h interval for PCA quantification.
2.4 Optimization studies of isolate SP535
Three factors affecting PCA degradation were studied, including initial PCA concentration (0.5, 1.0, 2.0 mM), initial pH (3, 5, 7, 9, 11) and culture temperature (15, 25, 35, 45, 55 ℃). Unless otherwise stated, the above experiments were performed at an initial pH of 7.0, an initial PCA concentration of 1.0 mM, and a culture temperature of 25 ℃. All cultures were incubated in a thermostatic oscillator for 120 h. PCA concentrations were measured by sampling 2.0 mL solution every 24 h to investigate the influence of culture conditions on the degradation of PCA by SP535.
2.5 Estimation of biomass
To investigate the effects of PCA on SP535 growth, fungal conidia inoculum was inoculated in the medium without PCA and the medium with PCA of 1.0 mM, and cultured at 180 rpm and 25 ℃ in a constant temperature shaker for 120 h. Culture samples (2.0 mL) were taken from each treatment every 24 h to measure the biomass of strain SP535. Total biomass produced by strain SP535 was quantified by following Ali et al. (2009) with some modifications. The whole cultures were filtered through Whatman filter papers (No.1), which were dried at 80 ℃ until constant weight and values were expressed as g/L.
2.6 Determination of cytochrome P450 monooxygenase
Mycelia obtained after 10 d of culture were converted to spheroplasts by following the method used by Ali et al. (2014). Briefly, 50 mg of mycelia were washed and concentrated 10-fold in 1.0 M sorbitol. The cells were briefly suspended in a mixture solution, including 1.4 M sorbitol, 40 mM HEPES (pH 7.5), 0.5 mM MgCl2 and a trace of β-mercaptoetahnol. The suspension was shaken for 15 min at 20 ℃ and then 5 mg/mL lyticase was added to lyse the cells. This suspension was shaken for 45 min at 20 ℃ and then the samples were checked microscopically for the presence of spheroplasts. The spheroplasts were separated from the suspension by centrifugation at 10,000 rpm for 15 min at 4 ℃. The spheroplasts from different treatments were suspended in 200 mL fractionation medium with pH at 7.4 (20 mM Tris, 20 mM KH2PO4, 0.33 M sucrose,1 mM EDTA and 0.2% bouvine serum albumin). The suspension was homogenized to prevent the aggregation of sub-cellular particles (Kovác et al. 1968; Mauersberger et al. 1980). The spheroplast lysate was diluted up to 350 mL with fractionation medium and pH was adjusted to 7.4. This homogenate was then fractionated by differential centrifugation. Intact spheroplast, nuclei and large debris were removed by centrifugation at 10,000 rpm for 10 min. The pellet was homogenized for 1 min, diluted and centrifuged as above. The supernatant obtained after centrifugation will be referred as cell free extract.
The remaining pellet was centrifuged at 20,000 rpm for 30 min; the supernatant was carefully discarded leaving the mitochondrial peroxisomal fraction. The pellets were re-suspended in fractionation medium and centrifuged at 20,000 rpm for 20 min. The supernatant was then decanted leaving the post-mitochondrial pellet and centrifuged at 20,000 rpm for 60 min after re-suspension in fractionation medium. This centrifugation step resulted in microsomal pellet which was re-suspended in fractionation buffer.
The concentration of functional cytochrome P450 monooxygenase was determined by CO difference spectra (Estabrook et al. 1978). Samples of microsomes containing 1.5 to 2 mg of protein in 1.0 mL of 50 mM Tris-HCl, pH 8.0, in a stopper cuvette were gently sparged with CO for 1 to 2 min, at which time several fine grains of solid sodium dithionite were added. Sparging was continued for 1 to 2 min more, and the cuvette was stoppered. Spectra (400 to 500 nm) were recorded at 20 ℃ using an extinction coefficient of 91 mm–1·cm–1. The sample was scanned repeatedly; the maximum development of the difference spectrum occurred 5 to 10 min after addition of the sodium dithionite and was recorded.
2.7 Sample preparation for scanning electron microscopy and transmission electron microscopy
To investigate the effects of PCA on the morphology and cell structure of SP535, SEM and TEM were performed on SP535 cultured for 120 h according to section 2.3.
The culture solution was centrifuged at 5,000 rpm for 20 min and supernatant was removed and the fungal mycelia were left. The fungal mycelia were washed thrice with 0.1 M PBS (pH 7.2). The material was then fixed with 2.5% glutaraldehyde in PBS buffer for 3 h at 4 ℃ then rinsed twice with PBS for 10 min each time followed by rinsing with ddH2O. The samples were then placed on glass cover slip (5*5 mm) and freeze dried in refrigerator at − 80 ℃ for 3 h followed by overnight drying at 4 ℃. The samples were then gold sprayed. The surface morphology of mycelia grown in the presence or absence of PCA was observed with SU8010 (Hitachi) scanning electron microscope (SEM) being operated at accelerated voltage of 5.0 kV.
For transmission electron microscope (TEM), the fungal material, fixed with 2.5% glutaraldehyde in PBS buffer for 3 h at 4 ℃ as above, was rinsed with same buffer and post-fixed in 1% osmium tetraoxide for 2 h. After dehydration in graded ethanol series, then propylene oxide, the samples were gradually infiltrate and finally embedded in an Epon-spurr’s resin mixture. Ultrathin section, prepared using Leica CM1950 microtome, were stained with uranyl acetate and lead citrate (Reynolds 1963; Różalska et al. 2014) and examined in a JEM 1400 TEM (Hitachi, Japan) at 80 kV.
2.8 Chemical analysis
Samples obtained in section 2.4 were centrifuged at 10,000 rpm for 10 min and supernatant was used for PCA quantification. PCA concentration in supernatant was measured by HPLC following Hussain et al. (2012) with some modifications. HPLC (Shimazdu LC-20) equipped with a UV detector at 254 nm and a reverse phase C18 column (250 mm × 4.6 mm) was used. The temperature of column was maintained at 40 ℃, the mobile phase was methanol-water (60:40, v/v) with a flow efficiency of 0.5 mL/min. A range of different concentrations of PCA standard were run along with the samples and PCA concentrations were quantified by PCA standard curve.