Reagents
Radotinib was generously gifted by Ilyang Pharmaceutical Co., Ltd., (Seoul, South Korea). Its purity was found to be 99.9% by HPLC analysis [16]. The cell culture plates were obtained from SPL Life Sciences (Pocheon, South Korea). All reagents were obtained from Sigma-Aldrich (St. Louis, MO, USA) unless otherwise indicated. The Apoptosis Detection Kit I was purchased from BD Biosciences (San Jose, CA, USA). The CellTiter 96 AQueous One Solution Cell Proliferation Assay was purchased from Promega (Madison, WI, USA). NE-PER Nuclear and Cytoplasmic Extraction Reagents were obtained from Thermo Scientific (Rockford, IL, USA). All antibodies for western blot were purchased from Cell Signaling Technology (Beverly, MA, USA).
Patient samples
All patients were newly diagnosed with AML (n = 5) at Ulsan University Hospital, Ulsan, South Korea, as described in Supplementary Table 1. Bone marrow samples were collected before administering the first round of chemotherapy.
Isolation of patient cells and culture
The patient cells were isolated by the density gradient method, as previously described [18]. In brief, bone marrow cells (BMCs) were isolated via density gradient centrifugation at 400 × g using Lymphoprep (Axis-Shield, Oslo, Norway). They were washed with phosphate-buffered saline (PBS) and cultured in RPMI1640 with 10% FBS and 1% penicillin-streptomycin in a 5% CO2 humidified atmosphere at 37°C.
Cell culture
The human AML cell lines HL60, HEL92.1.7, and THP-1 in this study were grown as suspension cultures in RPMI-1640 medium with 10% FBS and a 1% penicillin-streptomycin solution (final concentration: 100 units/ml and 100 μg/ml, respectively) in a 5% CO2 humidified atmosphere at 37°C, as previously described [16]. In addition, the human small cell lung cancer (SCLC) cell line H209 were cultured as described previous herein.
Cell viability assay
The effect of each drug on cell growth both as a single agent and in combination was determined by cell viability assay. Cells were seeded (density, 2 × 104 cells/well) in 96-well plates containing 200 µl medium per well and were incubated with 5 μM radotinib and/or 50 nM Ara-C for 48 h at 37°C. CellTiter 96 solution (20 µl; Promega, Madison, WI, USA) was added directly to each well, and the plates were incubated for 4 h in a humidified atmosphere of 5% CO2 at 37°C. Absorbance was measured at 490 nm using a SpectraMax iD3 Microplate Reader (Molecular Devices, San Jose, CA, USA). Results are expressed as percent change from baseline conditions determined using four to five culture wells for each experimental condition. The following equation was used: death (% of control) = 100 − cell viability [(OD target group / OD of 0 μM radotinib group) × 100]. In some experiments HL60 cells were treated with various concentrations of radotinib (0, 10, 30, 40 and 50 µM) and Ara-C (0, 40, 80, 120 and 160 nM) for 48 h. Additionally, cells were treated with a combined low dosage of idarubicin and daunorubicin.
Detection of Annexin V-positive cells
HL60 and HEL92.1.7 cells (1 × 105 cells/ml) were seeded in 24-well plates and treated with 5 μM radotinib and/or 50 nM Ara-C for 48 h at 37°C. The cells were harvested and washed twice with FACS buffer (PBS containing 0.2% bovine serum albumin and 0.1% NaN3). Then, the cells were stained with Annexin V-FITC from the Apoptosis Detection Kit I according to the manufacturer’s instructions. Cells were analyzed using the FACSCalibur flow cytometer and CellQuest Pro software.
Measurement of caspase-3 activity
Cells were examined using the CaspGLOW™ Fluorescein Active Caspase-3 Staining Kit according to the manufacturer’s instructions (Thermo Fisher Scientific, MA, USA).
Cell cycle analysis
HL60, HEL92.1.7 and THP-1 cells were treated with 5 μM radotinib and/or 50 nM Ara-C for 48 h at 37°C. They were then washed twice with PBS and fixed with 70% ethanol overnight at −20°C, followed by washing again with PBS and incubation with 0.5 ml PI/RNase stain buffer for 15 min at room temperature. The samples were then analyzed using a FACSCalibur flow cytometer and CellQuest Pro software (BD Biosciences).
Analysis of mitochondrial membrane potential
HL60 and HEL92.1.7 cells were incubated with 5 μM radotinib and/or 50 nM Ara-C for 48 h at 37 °C, harvested, and washed twice with PBS buffer. Mitochondrial membrane potential (MMP, ΔΨm) was evaluated by staining the cells with DiOC6(3) for 30 min. After incubation, the cells were harvested and washed. Percentages of DiOC6(3)-positive cells were determined using a flow cytometer and CellQuest Pro software.
Preparation of cytosolic extractions for cytochrome C analysis
HEL92.1.7 cells were treated with 5 μM radotinib and/or 50 nM Ara-C for 48 h at 37°C. Cells were washed with ice-cold PBS, resuspended in cold lysis buffer, and incubated on ice for 30 min. Next, the cytosolic fractions of cells were separated using the NE-PER Nuclear and Cytoplasmic Extraction Reagents according to the manufacturer’s instructions (Thermo Fisher Scientific, MA, USA). The release of cytochrome C was analyzed by immunoblotting with an anti-cytochrome C mAb.
Western blotting analysis
Cells were incubated with each drug and their combination for 48 h at 37°C. They were then washed three times with ice-cold PBS and harvested. Western blotting was performed as previously described [17, 18].
Xenograft animal model
Specific-pathogen-free five-week-old athymic nude male mice were purchased from Koatech (Pyeongtaek, Korea) and kept in a clean environment of the Ulsan University of Korea (Korea, Ulsan). All mice were housed in standard conditions (12-h light/dark cycle) under constant temperature (22–24°C) and humidity (50–60 %), given free access to food and water, and handled in accordance with the Institutional Animal Care and Use Committee (IACUC) of the University of Ulsan (Ulsan, Korea, Approval No. 0117-07). For anesthesia, mice were injected intraperitoneally with tribromoethanol (250 mg/kg). Mice were sacrificed using carbon dioxide (CO2) gas per IACUC protocol.
All mice were naïve to previous experimental manipulations. Each mouse was considered as one experimental unit, and mice were housed in 3-5 mice per cage. To minimize experimental bias, mice were randomized into all prospective treatment cages for in vivo preclinical experiments. The inoculations of tumor cells ex vivo were also blinded. The number of cohorts/mice used in each experiment is described in Supplementary Table 2. The xenograft animal model was generated as previously described [18]. Briefly, HEL92.1.7 tumors were established by subcutaneous injection of 1 × 107 cells into the right flank of five-week-old athymic nude male mice (n = 5 per group). To aid precise inoculations, mice were anaesthetized. Once tumors were established, mice were treated with vehicle (0.5% carboxymethylcellulose/DW), 50 mg/kg po radotinib daily, 50 mg/kg ip Ara-C daily every 5/7 day or their combination for up to 24 day. The maximal length and width of the tumor were measured once per week using digital calipers, and the tumor volume (V) was calculated using the following formula: V = (length × width2) × 0.5. The mice were sacrificed on days 30–34 following tumor cell implantation. If the size of the subcutaneous tumor exceeded 1000 mm in volume, the animals were excluded from the study and the standard was established for euthanasia before a predetermined time point. All tumors met the criteria, and there were no exclusions. The body weights of the tumor-bearing mice did not change significantly during the duration of study. The tumors were excised and weighed, and each tumor tissue was homogenized for the preparation of cell samples for several analyses including western blotting for specific molecular markers.
TUNEL assay for measurement of DNA double-strand breaks in tumor tissue
Tumors were frozen in optimal cutting temperature (OCT) compound, and stored at −80 °C until use. The frozen tissue samples were sectioned by a microtome-cryostat (CM1950, Leica Biosystems, IL, USA). Samples were fixed in 4% paraformaldehyde for 10 min, washed in PBS and then treated with 0.1% Triton X‐100 in PBS for 10 min. Then, tumor tissue samples were evaluated for apoptosis using the TUNEL Assay Kit according to the manufacturer's instructions (Abcam, Cambridge, United Kingdom). Cells were analyzed with a Fluorescence microscope (Olympus, NY, USA).
Staining of proliferating cell nuclear antigen (PCNA) positive cells in tumor tissue
Under the above experimental conditions, tumor tissue was stained with anti-PCNA monoclonal antibody (mAb) or isotype control mAb at 4°C for 30 min. The samples were then analyzed with a Fluorescence microscope (Olympus, NY, USA).
Statistical analysis
Data are presented as means ± the standard error of the mean (SEM) based on at least three independent experiments. All values were evaluated by a one-way analysis of variance followed by Tukey post-hoc test, as implemented by GraphPad Prism 7.0 (GraphPad Software, Inc., La Jolla, USA). Differences were considered significant when P < 0.05.