Patients and tissue samples: benign prostatic hyperplasia tissues and prostate cancer tissue during 2016 to 2021 were obtained from the Department of Urology, The First Affiliated Hospital of Chongqing Medical University (Chongqing, China). The characteristics of the included patients are shown in TableⅠ. Immunohistochemistry public data from The Human Protein Atlas (https://www.proteinatlas.org/).
Cell lines and transfection: PC-3, DU145, LNCaP, RWPE-1 and 22RV1 used in this study were gifted by the Molecular Medicine and Oncology Research Center, Chongqing Medical University, Chongqing, China. PC-3 cells were cultured in Ham's F-12K medium supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin. DU145 was cultured in DMEM medium supplemented with 10% fetal bovine serum, 1% penicillin/streptomycin. LNCaP, 22RV1 and RWPE-1 were cultured in RPMI-1640 medium supplemented with 10% fetal bovine serum, 1% penicillin/streptomycin. All cell lines were placed in the incubator at 37°, 5% CO2. All cell culture procedures were performed under mycoplasma-free conditions. Lentiviruses and plasmids for knockdown and overexpression of HIF-1α were purchased from Genechem (Shanghai, China) as well as Sangon Biotech (Shanghai, China), respectively, and were transfected according to the protocols provided by the manufacturers. The shRNA sequences were as follows: shRNA for HIF-1α(shHIF-1α), 5’-AATGTGAGTTCGCATCTTGAT-3’; shRNA for negative control (shNC), 5’-TTCTCCGAACGTGTCACGT-3’.
Wound-healing: Cells were inoculated into six-well plates and scratched with a 200uL pipette tip when the healing rate reached 100%, and samples were taken and photographed at 0 hour and 24 hours.
Trans-well: Cells were cultured in serum-free medium for 24 hours and then transferred to Trans-well chambers (LANSELECT, Anhui, China). 24 hours later, the chambers were removed and fixed by adding 4% paraformaldehyde, and then stained by adding drops of crystal violet.
Cell Counting Kit-8: PC3 cells were inoculated into 96-well plates according to 100 µl of culture solution per well, and assayed at 0h, 24h, 48h and 72h using CCK-8 kit (Beyotime, C0038). Each well was incubated at 37°C for 1h by adding 10µl CCK-8 solution, and the absorbance was measured at 450nm.
Cell cycle assay: Cells in six-well plates were collected and washed once with PBS, then 1 mL of DNA Staining solution and 10 µl of Permeabilization solution were added and mixed well, and incubated at room temperature and protected from light for 30 minutes, and finally detected using flow cytometry (CytoFLEX, Beckman).
Gelatin degradation assay: Configure the fluorescent gelatin solution according to the instructions. 100 µl of fluorescent gelatin solution was added dropwise to the confocal dish, incubated at room temperature for 10 min and then washed twice with PBS, fixed using 4% paraformaldehyde at room temperature, washed three times with PBS after fixation was completed, and 400 µl of complete medium was added and incubated for 4 hours at 37°C. 400uL of cell suspension was added dropwise to the fluorescent gelatin crawler, incubated at 37°, 5% CO2 incubator for 8 hours and then removed from the 24-well plate, fixed using 4% paraformaldehyde, and the follow-up same as immunofluorescence.
Animal experiments: Male BALB/c-nu thymus-free nude mice (4 weeks old, 20-25g, 20 in total, subcutaneous tumor models = 10, bone metastasis models = 10) were divided into two groups (shNC group, n = 5 and shHIF-1α group, n = 5). shNC PC-3 cells or shHIF-1α PC-3 cells were injected into the bone marrow cavities of the tibiae of the mice as well as subcutaneously, and the tumorigenic effect was monitored one week after injection.
Immunohistochemistry: Paraffin sections were placed in a 60° oven for 2 hours, then the sections were immersed in xylene for 45 minutes, and then sequentially placed in graded ethanol solutions (100%; 95%; 85%; 75%) for 5 minutes per gradient. Antigenic repair of the tissues was performed using sodium citrate solution, and the tissues were processed for staining using an immunohistochemistry kit (ZSGB-BIO, Beijing, China) after the repair was completed. In the assays against TKS5, HIF-1α, MMP9, and Ki67, we used primary antibodies including HIF-1α (1:200, Abcam, ab51608), TKS5 (1:200, Proteintech, 18976-1-AP), MMP9 (1:200, Proteintech, 30592-1-AP), Ki67 (1:200, Proteintech, 28074-1-AP). The average absorbance of the tissues was measured using Image J.
Immunofluorescence: Cells were inoculated into confocal dishes and cultured for 3 h. After the cells were fully attached to the wall, the medium was discarded and the residual medium was washed away with PBS, 4% paraformaldehyde was added and fixed for 10 min, and then goat serum was added for blocking, and after blocking was completed, the primary antibody was added and incubated overnight. In the assays against TKS5, F-actin, and HIF-1α, we used primary antibodies including TKS5 (1:200, Proteintech, 18976-1-AP), Phalloidin-AF555 (1:200, ZEN BIO, 16002), HIF-1α (1:200, Abcam. ab51608). Secondary antibody with HRP labeling was added and then fluorescent dye was added for staining. After staining was completed, DAPI was added to stain the nuclei, and finally an anti-fluorescence quencher was added dropwise. Cells were observed and photographed using a laser confocal microscope (Leica TCS SP8).
Coi
mmunoprecipitation (CoIP): Samples were processed to obtain precipitates using the Pierce™ Classic Magnetic IP/Co IP Kit(Thermo Fisher Scientific, 88804) according to the instruction manual, and the precipitates were denatured and assayed using western blot.
Western blot: Protein samples were obtained by processing the tissues/cells using the protein extraction kit(Beyotime, Shanghai, China), and after addition of 5×SDS buffer༈Beyotime, Shanghai, China༉, the samples were boiled at 95 ° C for 10 minutes and stored at 4 ° C. Use 6% and 8% SDS-PAGE gel for electrophoretic separation of proteins, after the completion of electrophoresis, the proteins on the gel will be electrotransferred to the PVDF membrane, and then use the skim milk powder solution configured with TBST for blocking, after the completion of blocking, wash off the excess block solution and put it into a primary antibody solution for incubation. After incubation, the excess primary antibody solution was washed away and incubated in the secondary antibody solution, and finally the ECL (Abbkine, BMU102) was configured for developing. The primary and secondary antibodies we used included TKS5 (1:1000, Proteintech, 18976-1-AP), HIF-1α (1:1000, Proteintech, 20960-1-AP), MMP9 (1:1000, Proteintech, 10375-2-AP), GAPDH (1: 5000, ZEN BIO, R24404), Goat Anti-Rabbit IgG (1:10000, biosharp, BL003A). Bands were analyzed for grayscale values using Image J.
Bioinformatic analysis: Use correlation analysis of the GEPIA database(http://gepia.cancer-pku.cn/) to detect the association of HIF-1α with invadopodia-related molecules.
Transcriptome sequencing: RNA was extracted using Total RNA Extractor (Trizol) (Sangon Biotech, B511311) and libraries were created. Raw data were obtained using Illumina Hiseq and analysed for differences using DESeq. Differential genes were annotated using GO and KEGG. Functionally enriched correlation analysis using the R’s igraph package.
Liquid Chromatography-Mass Spectrometry (LC-MS): Thermo Scientific LC-MS system (Thermo Fisher Scientific) was used to analyze the potential interaction sites between HIF-1α and TKS5.
Quantitative reverse transcription PCR, RT-qPCR: Total RNA was extracted by RNA extraction kit (RK30120, ABclonal), and the concentration of RNA was detected by NanoDrop2000(Thermo Fisher Scientific). Follow the instructions. cDNA was obtained using reverse transcription kit (RK20429, ABclonal). The reaction conditions are as follows: 37℃for 2min,55℃ for 15min ,85℃ for 5min. qPCR was performed using the CFX Connect Real-Time System(Bio-Rad),and use the following protocol: Denaturation at 95°C for 3 min, followed by 95°C for 5 sec, 60°C for 30 sec, 40 cycles. Using the 2ΔΔCq to analysis the relative gene expression levels. The sequences were as follows: HIF-1α: F: 5’-GGCGCGAACGACAAGAAAAA-3’ ,R: 5’-GCCGAGATCTGGCTGCAT-3’;GAPDH: F༚5’-CAGGAGGCATTGCTGATGAT-3’, R: 5’-GAAGGCTGGGGCTCATTT-3’.
Statistical analysis: GraphPad (version 10.1.2, GraphPad Software Inc.) and SPSS (version 27.0.1, IBM Corp.) were used for plotting and statistics. Comparisons between two groups were performed using an unpaired Student's ttest, comparisons between multiple groups were performed using oneway ANOVA followed by Tukey's post hoc test. P < 0.05 was considered statistically significant.