Patient characteristics
The clinical characteristics of 283 HCC patients in the present study are summarized in Table 1. The mean age was 52.3 years (range, 17 to 76 years), 235 patients were male and 48 female. Two hundred and fifteen patients (75.8%) were infected with hepatitis B virus and 26 (9.2%) with hepatitis C virus. No viral marker was detected in 38 patients (13.4%). About 83% of patients had AJCC T stage 1 or 2 disease. The mean tumor size was 4.8 cm, and 95 (33.6%) tumors were greater than 5.0cm in size. Microvascular invasion, major portal invasion, intrahepatic metastasis, and multicentric occurrence were observed in 54.1%, 4.0%, 22.6%, and 6.0% of patients, respectively. Tumor recurrence developed in 188 (66.4%) patients, 138 (48.8%) in early recurrence and 50 (17.7%) in late recurrence. Approximately 50% of patients had background liver cirrhosis.
Table 1
The association between ZMYND8 expression and clinicopathologic parameters.
|
|
ZMYND8 expression
|
|
|
ZMYND8 mRNA expression
|
|
|
No.
|
Low
|
High
|
|
No.
|
Low
|
High
|
|
|
n = 283
|
n = 225 (%)
|
n = 58 (%)
|
p value
|
n = 234
|
n = 171 (%)
|
n = 63 (%)
|
p value
|
Age, year
|
|
|
|
|
|
|
|
|
≤ 55
|
164
|
126 (56.0)
|
38 (65.5)
|
0.190
|
136
|
100 (58.5)
|
36 (57.1)
|
0.854
|
> 55
|
119
|
99 (44.0)
|
20 (34.5)
|
|
98
|
71 (41.5)
|
27 (42.9)
|
|
Gender
|
|
|
|
|
|
|
|
|
Female
|
48
|
38 (16.9)
|
10 (17.2)
|
0.949
|
38
|
31 (18.1)
|
7 (11.1)
|
0.197
|
Male
|
235
|
187 (83.1)
|
48 (82.8)
|
|
196
|
140 (81.9)
|
56 (88.9)
|
|
Tumor size, cm
|
|
|
|
|
|
|
|
|
≤ 5.0
|
188
|
155 (68.9)
|
33 (56.9)
|
0.085
|
155
|
124 (72.5)
|
31 (49.2)
|
0.001
|
> 5.0
|
95
|
70 (31.1)
|
25 (43.1)
|
|
79
|
47 (27.5)
|
32 (50.8)
|
|
Edmondson grade
|
|
|
|
|
|
|
|
|
I
|
32
|
28 (12.4)
|
4 (6.9)
|
< 0.001
|
24
|
21 (12.3)
|
3 (4.8)
|
0.018
|
II
|
227
|
187 (83.1)
|
40 (69.0)
|
|
190
|
140 (81.9)
|
50 (79.4)
|
|
III
|
24
|
10 (4.4)
|
14 (24.1)
|
|
20
|
10 (5.8)
|
10 (15.9)
|
|
Microvascular invasion
|
|
|
|
|
|
|
|
|
(-)
|
130
|
118 (52.4)
|
12 (20.7)
|
< 0.001
|
105
|
89 (52.0)
|
16 (25.4)
|
< 0.001
|
(+)
|
153
|
107 (47.6)
|
46 (79.3)
|
|
129
|
82 (48.0)
|
47 (74.6)
|
|
Major portal vein invasion
|
|
|
|
|
|
|
|
|
(-)
|
272
|
218 (96.9)
|
54 (93.1)
|
0.245
|
225
|
166 (97.1)
|
59 (93.7)
|
0.256b)
|
(+)
|
11
|
7 (3.1)
|
4 (6.9)
|
|
9
|
5 (2.9)
|
4 (6.3)
|
|
Intrahepatic metastasis
|
|
|
|
|
|
|
|
|
(-)
|
219
|
182 (80.9)
|
37 (63.8)
|
0.006
|
181
|
136 (79.5)
|
45 (71.4)
|
0.189
|
(+)
|
64
|
43 (19.1)
|
21 (36.2)
|
|
53
|
35 (20.6)
|
18 (28.6)
|
|
Multicentric occurrence
|
|
|
|
|
|
|
|
|
(-)
|
266
|
209 (92.9)
|
57 (98.3)
|
0.211
|
222
|
161 (94.2)
|
61 (96.8)
|
0.522b)
|
(+)
|
17
|
16 (7.1)
|
1 (1.7)
|
|
12
|
10 (5.8)
|
2 (3.2)
|
|
Mitotic index
|
|
|
|
|
|
|
|
|
Low (≤ 4/10 HPF)
|
155
|
148 (65.8)
|
7 (12.1)
|
< 0.001
|
128
|
105 (61.4)
|
23 (36.5)
|
0.001
|
High (≥ 5/10 HPF)
|
128
|
77 (34.2)
|
51 (87.9)
|
|
106
|
66 (38.6)
|
40 (63.5)
|
|
Tumor necrosis
|
|
|
|
|
|
|
|
|
(-)
|
215
|
188 (83.6)
|
27 (46.6)
|
< 0.001
|
176
|
141 (82.5)
|
35 (55.6)
|
< 0.001
|
(+)
|
68
|
37 (16.4)
|
31 (53.4)
|
|
58
|
30 (17.5)
|
28 (44.4)
|
|
AJCC T-stageb)
|
|
|
|
|
|
|
|
|
1
|
122
|
110 (48.9)
|
12 (20.7)
|
< 0.001
|
100
|
85 (49.7)
|
15 (23.8)
|
0.002b)
|
2
|
113
|
83 (36.9)
|
30 (51.7)
|
|
96
|
60 (35.1)
|
36 (57.1)
|
|
3
|
42
|
28 (12.4)
|
14 (24.1)
|
|
33
|
22 (12.9)
|
11 (17.5)
|
|
4
|
6
|
4 (1.8)
|
2 (3.4)
|
|
5
|
4 (2.3)
|
1 (1.6)
|
|
BCLC stage
|
|
|
|
|
|
|
|
|
0-A
|
163
|
134 (59.6)
|
29 (50.0)
|
0.347
|
135
|
110 (64.3)
|
25 (39.7)
|
0.003
|
B
|
107
|
82 (36.4)
|
25 (43.1)
|
|
89
|
55 (32.2)
|
34 (54.0)
|
|
C
|
13
|
9 (4.0)
|
4 (6.9)
|
|
10
|
6 (3.5)
|
4 (6.3)
|
|
Albumin level, g/dL
|
|
|
|
|
|
|
|
|
> 3.5
|
28
|
206 (91.6)
|
49 (84.5)
|
0.108
|
22
|
157 (91.8)
|
55 (87.3)
|
0.294
|
≤ 3.5
|
255
|
19 (8.4)
|
9 (15.5)
|
|
212
|
14 (8.2)
|
8 (12.7)
|
|
AFP level, ng/mLa)
|
|
|
|
|
|
|
|
|
≤ 200
|
173
|
148 (68.5)
|
25 (43.9)
|
0.001
|
145
|
115 (69.7)
|
30 (48.4)
|
0.003
|
> 200
|
100
|
68 (31.5)
|
32 (56.1)
|
|
82
|
50 (30.3)
|
32 (51.6)
|
|
Etiology
|
|
|
|
|
|
|
|
|
Non-viral
|
38
|
29 (12.9)
|
9 (15.5)
|
0.526
|
32
|
23 (13.5)
|
9 (14.3)
|
0.985b)
|
HBV
|
215
|
173 (76.9)
|
42 (72.4)
|
|
179
|
131 (76.6)
|
48 (76.2)
|
|
HCV
|
26
|
20 (8.9)
|
6 (10.3)
|
|
20
|
15 (8.8)
|
5 (7.9)
|
|
HBV & HCV
|
4
|
3 (1.3)
|
1 (1.7)
|
|
3
|
2 (1.2)
|
1 (1.6)
|
|
Liver cirrhosis
|
|
|
|
|
|
|
|
|
(-)
|
140
|
115 (51.1)
|
25 (43.1)
|
0.277
|
120
|
87 (50.9)
|
33 (52.4)
|
0.838
|
(+)
|
143
|
110 (48.9)
|
33 (56.9)
|
|
114
|
84 (49.1)
|
30 (47.6)
|
|
Early recurrence
|
|
|
|
|
|
|
|
|
(≤ 2 years)
|
|
|
|
|
|
|
|
|
(-)c)
|
145
|
120 (53.3)
|
25 (43.1)
|
0.165
|
124
|
99 (58.2)
|
25 (39.1)
|
0.013
|
(+)
|
138
|
105 (46.7)
|
33 (56.9)
|
|
110
|
72 (42.1)
|
38 (60.3)
|
|
Late recurrence
|
|
|
|
|
|
|
|
|
(> 2 years)
|
|
|
|
|
|
|
|
|
(-)c)
|
95
|
78 (65.0)
|
17 (68.0)
|
0.774
|
83
|
66 (66.7)
|
17 (68.0)
|
0.899
|
(+)
|
50
|
42 (35.0)
|
8 (32.0)
|
|
41
|
33 (33.3)
|
8 (32.0)
|
|
AJCC, American Joint Committee on Cancer; BCLC, Barcelona Clinic Liver Cancer;
AFP, α-fetoprotein; HBV, hepatitis B virus; HCV, hepatitis C virus.
a) AFP evaluation was not applicable in 10 cases., b) by Fisher's exact test, otherwise by chi-square test, c) No early or late recurrence
|
ZMYND8 protein expression in HCC
In HCC, immunoreactivity for ZMYND8 was observed in the nucleus of tumor cells (Fig. 1). No immunoreactivity was detected in background non-tumor hepatocytes. The mean IHC expression Remmele score of ZMYND8 was 1.86 (median, 0, range, 0–12). ZMYND8 expression was regarded as high when the IHC score was greater than 4.0, which was determined as the best cutoff value associated with recurrence free survival (RFS) via the X-tile package. ZMYND8 protein overexpression was observed in 58 of the 283 HCC patients (20.5%). The associations between ZMYND8 protein expression and clinicopathologic characteristics are summarized in Table 1. High ZMYND8 expression was significantly associated with higher Edmondson grade (p < 0.001), high mitotic index (p < 0.001), tumor necrosis (p < 0.001), microvascular invasion (p < 0.001), intrahepatic metastasis (p = 0.006), advanced AJCC T stage (p < 0.001), and increased serum AFP level (p = 0.001). The mean mitotic index was significantly higher in the high ZMYND8 expression group than the low expression group (mean ± standard deviation, 17.93 ± 14.42 vs. 5.14 ± 7.93, p < 0.001).
ZMYND8 mRNA expression in HCC
The quantification of ZMYND8 mRNA expression was available in 234 HCC samples. The mean mRNA expression of ZMYND8 was 7.00 (median, 6.97, range 6.27–8.22). Expression of ZMYND8 was higher in HCC tissue than in background non-tumor tissue (mean ± standard deviation, 7.00 ± 0.32 vs 6.68 ± 0.16, p < 0.001, Fig. 2A). The spearman’s correlation analysis revealed a statistically significant positive correlation between ZMYND8 protein and ZMYND8 mRNA expression level (r = 0.354, p < 0.001, Fig. 2B). The best cutoff value of ZMYND8 mRNA level with the highest level of statistical significance related to RFS was 7.12 via the X-tile package. High ZMYND8 mRNA expression was observed in 63 of the 234 HCC patients (26.9%). Table 1 summarizes the clinicopathologic parameters with ZMYND8 mRNA level. High ZMYND8 mRNA expression showed significant association with larger tumor size (p = 0.001), higher Edmondson grade (p = 0.018), high mitotic index (p = 0.001), tumor necrosis (p < 0.001), microvascular invasion (p < 0.001), advanced AJCC T stage (p = 0.002), advanced BCLC stage (p = 0.003), increased AFP level (p = 0.003), and early recurrence (p = 0.013). The mean mitotic index was significantly higher in the high ZMYND8 expression group than the low expression group (mean ± standard deviation, 12.65 ± 14.33 vs. 6.09 ± 8.79, p < 0.001).
Association between ZMYND8 expression and prognosis of HCC patients
The high ZMYND8 protein expression group showed a stronger trend toward shorter RFS (p = 0.053) and a significantly shorter disease specific survival (DSS) (p = 0.02) by the log rank test, as compared to the low ZMYND8 expression group according to a survival analysis with a 79.5 month mean follow-up period (Fig. 3A and 3B). By applying the Breslow test, which attributes greater weight to earlier events, patients with high ZMYND8 protein expression showed significantly shorter RFS (p = 0.002). Patients with high ZMYND8 mRNA expression showed a shorter RFS (p = 0.003) and DSS (p = 0.037) than those with low expression (Fig. 3C and 3D).
On univariable analysis, larger tumor size, higher Edmondson grade, tumor necrosis, microvascular invasion, major portal vein invasion, intrahepatic metastasis, higher AJCC T-stage, higher BCLC stage, lower albumin level, and high serum AFP level showed unfavorable influences on both RFS and DSS. Viral etiology unfavorably influenced RFS. A high mitotic index showed unfavorable effects on DSS. High ZMYND8 protein expression showed unfavorable effects on DSS (p = 0.021, hazard ratio 1.695) and high ZMYND8 mRNA expression showed unfavorable effects on both RFS (p = 0.003, hazard ratio 1.697) and DSS (p = 0.039, hazard ratio 1.640) (Table 2).
Table 2
Univariable analysis for recurrence free survival and disease-specific survival
|
Recurrence free survival
|
Disease specific survival
|
|
HR (95% CI)
|
p value
|
HR (95% CI)
|
p value
|
Age, year
|
|
|
|
|
> 55 vs ≤ 55
|
0.968 (0.723–1.297)
|
0.829
|
0.936 (0.625–1.400)
|
0.747
|
Gender
|
|
|
|
|
Male vs Female
|
0.979 (0.675–1.419)
|
0.910
|
0.910 (0.696–1.189)
|
0.488
|
Tumor size, cm
|
|
|
|
|
> 5.0 vs ≤ 5.0
|
1.757 (1.309–2.358)
|
< 0.001
|
2.930 (1.969–4.360)
|
< 0.001
|
Edmondson grade
|
|
|
|
|
III vs I, II
|
2.242 (1.421–3.539)
|
0.001
|
2.670 (1.514–4.710)
|
0.001
|
Microvascular invasion
|
|
|
|
|
(+) vs (-)
|
2.210 (1.644 0 2.971)
|
< 0.001
|
3.225 (2.057–5.056)
|
< 0.001
|
Major portal vein invasion
|
|
|
|
|
(+) vs (-)
|
3.420 (1.802–6.493)
|
< 0.001
|
5.024 (2.518–10.024)
|
< 0.001
|
Intrahepatic metastasis
|
|
|
|
|
(+) vs (-)
|
4.980 (3.593–6.903)
|
< 0.001
|
5.838 (3.890–8.760)
|
< 0.001
|
Multicentric occurrence
|
|
|
|
|
(+) vs (-)
|
1.183 (0.625–2.241)
|
0.605
|
0.669 (0.246–1.821)
|
0.432
|
Mitotic index
|
|
|
|
|
High vs Low
|
1.293 (0.971–1.722)
|
0.079
|
2.126 (1.422–3.177)
|
< 0.001
|
Tumor necrosis
|
|
|
|
|
(+) vs (-)
|
2.610 (1.899–3.585)
|
< 0.001
|
4.345 (2.909–6.492)
|
< 0.001
|
AJCC T-stage
|
|
|
|
|
2,3,4 vs 1
|
2.256 (1.672–3.044)
|
< 0.001
|
3.265 (2.058–5.181)
|
< 0.001
|
BCLC stage
|
|
|
|
|
B,C vs 0, A
|
2.141 (1.605–2.855)
|
< 0.001
|
3.970 (2.606–6.046)
|
< 0.001
|
Albumin level, g/dL
|
|
|
|
|
≤ 3.5 vs > 3.5
|
1.859 (1.190–2.905)
|
0.006
|
2.367 (1.362–4.115)
|
0.002
|
AFP level, ng/mLa)
|
|
|
|
|
> 200 vs ≤ 200
|
1.721 (1.283–2.310)
|
< 0.001
|
1.772 (1.181–2.658)
|
0.006
|
Etiology
|
|
|
|
|
Viral vs Non-viral
|
2.032 (1.233–3.348)
|
0.005
|
1.526 (0.793–2.935)
|
0.206
|
Liver cirrhosis
|
|
|
|
|
(+) vs (-)
|
1.314 (0.986–1.752)
|
0.062
|
1.031 (0.694–1.531)
|
0.882
|
ZMYND8 expression (IHC)
|
|
|
|
|
High vs Low
|
1.406 (0.994–1.988)
|
0.054
|
1.695 (1.082–2.654)
|
0.021
|
ZMYND8 expression (mRNA)
|
|
|
|
|
High vs Low
|
1.697 (1.198–2.405)
|
0.003
|
1.640 (1.026–2.620)
|
0.039
|
HR, Hazard Ratio; CI, Confidence Interval; AJCC, American Joint Committee on Cancer; BCLC, Barcelona Clinic Liver Cancer; IHC, Immunohistochemistry |
We classified ZMYND8 expression as mRNA and protein and performed multivariable analysis two times with each variable. Multivariable analysis with ZMYND8 protein expression showed that intrahepatic metastasis and tumor necrosis were independent predictors of both shorter RFS and shorter DSS, and low AFP level was an independent predictor for shorter DSS. ZMYND8 protein overexpression was not an independent prognostic factor for RFS or DSS (Table 3). On multivariable analysis with ZMYND8 mRNA expression, intrahepatic metastasis and tumor necrosis were found to be an independent predictor of both shorter RFS and DSS. ZMYND8 mRNA expression was an independent predictor for RFS (p = 0.020, hazard ratio 1.572), not for DSS (p = 0.864) (Table 4).
Table 3
Multivariable analysis for recurrence free survival and disease-specific survival including ZMYND8 protein expression
|
Recurrence free survival
|
Disease specific survival
|
|
HR (95% CI)
|
p value
|
HR (95% CI)
|
p value
|
Tumor size, cm
|
|
|
|
|
> 5.0 vs ≤ 5.0
|
0.934 (0.657–1.330)
|
0.707
|
1.504 (0.0921–2.458)
|
0.103
|
Edmondson grade
|
|
|
|
|
III vs I, II
|
1.359 (0.813–2.271)
|
0.241
|
0.979 (0.508–1.887)
|
0.949
|
Microvascular invasion
|
|
|
|
|
(+) vs (-)
|
1.056 (0.687–1.624)
|
0.804
|
0.715 (0.369–1.385)
|
0.320
|
Major portal vein invasion
|
|
|
|
|
(+) vs (-)
|
0.796 (0.382–1.657)
|
0.542
|
1.180 (0.545–2.555)
|
0.674
|
Intrahepatic metastasis
|
|
|
|
|
(+) vs (-)
|
4.492 (2.896–6.967)
|
< 0.001
|
4.962 (2.840–8.670)
|
< 0.001
|
Mitotic index
|
|
|
|
|
High vs Low
|
0.727 (0.507–1.042)
|
0.083
|
1.449 (0.879–2.389)
|
0.145
|
Tumor necrosis
|
|
|
|
|
(+) vs (-)
|
2.302 (1.502–3.527)
|
< 0.001
|
3.609 (2.122–6.138)
|
< 0.001
|
Albumin level, g/dL
|
|
|
|
|
≤ 3.5 vs > 3.5
|
1.363 (0.817–2.277)
|
0.236
|
1.372 (0.720–2.616)
|
0.336
|
AFP level, ng/mLa)
|
|
|
|
|
> 200 vs ≤ 200
|
1.393 (1.008–1.925)
|
0.044
|
1.148 (0.718–1.836)
|
0.565
|
Etiology
|
|
|
|
|
Viral vs Non-viral
|
1.515 (0.894–2.565)
|
0.122
|
0.962 (0.471–1.962)
|
0.915
|
ZMYND8 expression (IHC)
|
|
|
|
|
High vs Low
|
0.898 (0.585–1.377)
|
0.621
|
0.735 (0.419–1.288)
|
0.282
|
HR, Hazard Ratio; CI, Confidence Interval; IHC, Immunohistochemistry |
Table 4
Multivariable analysis for recurrence free survival and disease-specific survival including ZMYND8 mRNA expression
|
Recurrence free survival
|
Disease specific survival
|
|
HR (95% CI)
|
p value
|
HR (95% CI)
|
p value
|
Tumor size, cm
|
|
|
|
|
> 5.0 vs ≤ 5.0
|
0.793 (0.539–1.167)
|
0.240
|
1.470 (0.854–2.530)
|
0.165
|
Edmondson grade
|
|
|
|
|
III vs I, II
|
1.469 (0.821–2.630)
|
0.195
|
0.808 (0.387–1.689)
|
0.571
|
Microvascular invasion
|
|
|
|
|
(+) vs (-)
|
1.032 (0.634–1.681)
|
0.898
|
0.656 (0.308–1.398)
|
0.275
|
Major portal vein invasion
|
|
|
|
|
(+) vs (-)
|
0.679 (0.299–1.542)
|
0.355
|
1.583 (0.682–3.676)
|
0.285
|
Intrahepatic metastasis
|
|
|
|
|
(+) vs (-)
|
5.854 (3.572–9.594)
|
< 0.001
|
4.758 (2.576–8.788)
|
< 0.001
|
Mitotic index
|
|
|
|
|
High vs Low
|
0.673 (0.452–1.002)
|
0.051
|
1.470 (0.844–2.561)
|
0.174
|
Tumor necrosis
|
|
|
|
|
(+) vs (-)
|
2.064 (1.326–3.215)
|
0.001
|
3.473 (1.957–6.164)
|
< 0.001
|
Albumin level, g/dL
|
|
|
|
|
≤ 3.5 vs > 3.5
|
1.207 (0.691–2.109)
|
0.509
|
1.208 (0.599–2.437)
|
0.597
|
AFP level, ng/mLa)
|
|
|
|
|
> 200 vs ≤ 200
|
1.257 (0.871–1.813)
|
0.222
|
1.029 (0.615–1.724)
|
0.913
|
Etiology
|
|
|
|
|
Viral vs Non-viral
|
1.699 (0.931–3.103)
|
0.084
|
1.020 (0.458–2.272)
|
0.961
|
ZMYND8 expression (mRNA)
|
|
|
|
|
High vs Low
|
1.572 (1.074–2.300)
|
0.020
|
1.047 (0.622–1.761)
|
0.864
|
HR, Hazard Ratio; CI, Confidence Interval |
Prognostic effect of ZMYND8 mRNA expression in TCGA data
We found the unfavorable prognostic effect of ZMYND8 expression in an independent HCC cohort consisting of TCGA RNAseq samples. Patients with high expression of ZMYND8 mRNA showed shorter RFS (p = 0.008) and OS (p = 0.003) than those with low expression (p < 0.001) (Fig. 3E and 3F).
Gene set enrichment analysis in ZMYND8-high HCC
List of DEGs between high and low expression group of ZMYND8 was summarized in supplementary Table 1, and list of significantly enriched gene sets according to ZMYND8 expression status was summarized in Table 5. Gene signatures related to cell proliferation were significantly enriched, including gene sets of E2F targets, G2M checkpoint, MYC targets, mitotic spindle and apoptosis. In addition, the expression of ZMYND8 was strongly associated with the enrichment of gene sets involved in hypoxia, oxidative phosphorylation and angiogenesis, as well as apical junction and epithelial-mesenchymal transition. Gene set of DNA repair was also significantly enriched.
Table 5
List of enriched gene sets according to ZMYND8 expression status in hepatocellular carcinomas.
Gene Set Name
|
# Genes in Gene Set (K)
|
Description
|
# Genes in Overlap (k)
|
k/K
|
p-value
|
FDR q-value
|
HALLMARK_E2F_TARGETS
|
200
|
Genes encoding cell cycle related targets of E2F transcription factors.
|
58
|
0.29
|
1.44E-43
|
7.19E-42
|
HALLMARK_G2M_CHECKPOINT
|
200
|
Genes involved in the G2/M checkpoint, as in progression through the cell division cycle.
|
47
|
0.235
|
5.62E-31
|
1.41E-29
|
HALLMARK_COAGULATION
|
138
|
Genes encoding components of blood coagulation system; also up-regulated in platelets.
|
37
|
0.2681
|
6.92E-27
|
1.15E-25
|
HALLMARK_XENOBIOTIC_METABOLISM
|
200
|
Genes encoding proteins involved in processing of drugs and other xenobiotics.
|
43
|
0.215
|
9.30E-27
|
1.16E-25
|
HALLMARK_MYC_TARGETS_V1
|
200
|
A subgroup of genes regulated by MYC - version 1 (v1).
|
41
|
0.205
|
9.99E-25
|
9.99E-24
|
HALLMARK_MYC_TARGETS_V2
|
58
|
A subgroup of genes regulated by MYC - version 2 (v2).
|
18
|
0.3103
|
4.93E-15
|
4.11E-14
|
HALLMARK_FATTY_ACID_METABOLISM
|
158
|
Genes encoding proteins involved in metabolism of fatty acids.
|
25
|
0.1582
|
6.37E-13
|
4.55E-12
|
HALLMARK_MTORC1_SIGNALING
|
200
|
Genes up-regulated through activation of mTORC1 complex.
|
26
|
0.13
|
2.22E-11
|
1.39E-10
|
HALLMARK_BILE_ACID_METABOLISM
|
112
|
Genes involve in metabolism of bile acids and salts.
|
19
|
0.1696
|
1.07E-10
|
5.94E-10
|
HALLMARK_MITOTIC_SPINDLE
|
199
|
Genes important for mitotic spindle assembly.
|
23
|
0.1156
|
3.23E-09
|
1.61E-08
|
HALLMARK_PEROXISOME
|
104
|
Genes encoding components of peroxisome.
|
16
|
0.1538
|
1.35E-08
|
6.16E-08
|
HALLMARK_COMPLEMENT
|
200
|
Genes encoding components of the complement system, which is part of the innate immune system.
|
21
|
0.105
|
8.26E-08
|
3.44E-07
|
HALLMARK_ADIPOGENESIS
|
200
|
Genes up-regulated during adipocyte differentiation (adipogenesis).
|
20
|
0.1
|
3.69E-07
|
1.42E-06
|
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
|
200
|
Genes defining epithelial-mesenchymal transition, as in wound healing, fibrosis and metastasis.
|
18
|
0.09
|
6.24E-06
|
1.84E-05
|
HALLMARK_GLYCOLYSIS
|
200
|
Genes encoding proteins involved in glycolysis and gluconeogenesis.
|
18
|
0.09
|
6.24E-06
|
1.84E-05
|
HALLMARK_KRAS_SIGNALING_UP
|
200
|
Genes up-regulated by KRAS activation.
|
18
|
0.09
|
6.24E-06
|
1.84E-05
|
HALLMARK_OXIDATIVE_PHOSPHORYLATION
|
200
|
Genes encoding proteins involved in oxidative phosphorylation.
|
18
|
0.09
|
6.24E-06
|
1.84E-05
|
HALLMARK_ANDROGEN_RESPONSE
|
100
|
Genes defining response to androgens.
|
12
|
0.12
|
1.25E-05
|
3.46E-05
|
HALLMARK_APOPTOSIS
|
161
|
Genes mediating programmed cell death (apoptosis) by activation of caspases.
|
15
|
0.0932
|
2.41E-05
|
6.34E-05
|
HALLMARK_UV_RESPONSE_UP
|
158
|
Genes up-regulated in response to ultraviolet (UV) radiation.
|
14
|
0.0886
|
7.71E-05
|
1.90E-04
|
HALLMARK_APICAL_JUNCTION
|
200
|
Genes encoding components of apical junction complex.
|
16
|
0.08
|
8.36E-05
|
1.90E-04
|
HALLMARK_ESTROGEN_RESPONSE_LATE
|
200
|
Genes defining late response to estrogen.
|
16
|
0.08
|
8.36E-05
|
1.90E-04
|
HALLMARK_HYPOXIA
|
200
|
Genes up-regulated in response to low oxygen levels (hypoxia).
|
15
|
0.075
|
2.79E-04
|
6.06E-04
|
HALLMARK_ANGIOGENESIS
|
36
|
Genes up-regulated during formation of blood vessels (angiogenesis).
|
6
|
0.1667
|
3.17E-04
|
6.61E-04
|
HALLMARK_DNA_REPAIR
|
150
|
Genes involved in DNA repair.
|
12
|
0.08
|
6.22E-04
|
1.24E-03
|
HALLMARK_UNFOLDED_PROTEIN_RESPONSE
|
113
|
Genes up-regulated during unfolded protein response, a cellular stress response related to the endoplasmic reticulum.
|
10
|
0.0885
|
7.97E-04
|
1.53E-03
|
HALLMARK_HEDGEHOG_SIGNALING
|
36
|
Genes up-regulated by activation of hedgehog signaling.
|
5
|
0.1389
|
2.35E-03
|
4.31E-03
|
HALLMARK_IL2_STAT5_SIGNALING
|
199
|
Genes up-regulated by STAT5 in response to IL2 stimulation.
|
13
|
0.0653
|
2.41E-03
|
4.31E-03
|
HALLMARK_MYOGENESIS
|
200 + B3B31:C31
|
Genes involved in development of skeletal muscle (myogenesis).
|
13
|
0.065
|
2.52E-03
|
4.35E-03
|
Table is sorted in the order of q value, and only the list of q values less than 0.005 was displayed.
|
ZMYND8 expression affects invasiveness and tumorigenesis of HCCs
We performed in vitro and in vivo assays to evaluate the clinical observations of ZMYND8 mentioned above. After knockdown of ZMYND8 with treatment of Sh-ZMYND8 in the Huh7, SNU449, PLC/PRF5 cell lines (Fig. 4A-B), sphere formation, soft agar colony formation migration and invasion of cancer cells were dramatically decreased (Fig. 4C-D). The rate of early and late apoptosis increased after Sh-ZMYND8 treatment (Fig. 4E). Downregulation of ZMYND8 inhibited the growth of HCC xenografts in Balb/c nude mice (Fig. 4F).