Osteosarcoma patients
In this study, 37 osteosarcomas of bone that underwent surgical resection at the Jeonbuk National University Hospital between January 1998 and December 2012 were evaluated. The cases with a complete medical record, histologic slides, and paraffin-embedded tissue blocks were included in this study. All cases were reviewed according to the World Health Organization classification of bone tumors [27] and the American Joint Committee on Cancer staging system [36]. The clinicopathologic factors of osteosarcoma evaluated in this study were age (< 30 y versus ≥ 30 y), sex (male versus female), tumor size (≤ 8 cm versus > 8 cm), tumor stage (I versus II-III), histologic grade (low versus high), lymph node metastasis (absence versus presence), distant metastasis at diagnosis (absence versus presence), and latent distant metastasis (absence versus presence). Latent distant metastasis is defined as a relapse of osteosarcoma at a distant organ during follow-up after operation. The clinical information was obtained by reviewing the medical records. There were no patients who received preoperative chemotherapy, but twenty-six patients received adjuvant chemotherapy. This study was performed with approval of the institutional review board approval at Jeonbuk National University Hospital, and the requirement for informed consent was waived (IRB number, CUH 2018-08-040-001).
Immunohistochemical staining and scoring in the tissue microarray of human osteosarcoma
Immunohistochemical staining for SIRT6 was performed with tissue microarray (TMA) sections for osteosarcoma. The TMA cores were established to contain primarily tumor cells in the core without any degenerative change. Two 3.0 mm cores were established for each case. The TMA sections were deparaffinized and antigen retrieval was performed by boiling with a microwave oven for 20 minutes in pH 6.0 antigen retrieval buffer (DAKO, Glostrup, Denmark). The tissue sections were incubated with anti-SIRT6 (1:100, Cell Signaling Technology, Beverly, MA) antibodies. The slides immunostained for SIRT6 were evaluated by two pathologists (KYJ and KMK) under a multi-viewing microscope and the scoring performed with consensus without information for the case. The immunohistochemical expression of SIRT6 was scored by adding the staining intensity score and staining area score. The staining intensity was scored from zero to three (0; no expression, 1; weak expression, 2; intermediate expression, and 3; strong expression), and the staining area was scored from zero to five (0: no stained cells; 1: 1%, 2: 2~10%, 3: 11~33%; 4: 34~66%; and 5: 67~100%) [10, 31, 37-39]. Thereafter, the final immunohistochemical staining score was obtained by adding the scores obtained from each TMA core, which ranged from zero to sixteen [38, 39].
Cell culture, chemicals, and transfection
This study used two human osteosarcoma cell lines, U2OS (Korean Cell Line Bank, Seoul, Korea) and KHOS/NP. KHOS/NP cells were kindly provided by Chang-Bae Kong (Department of Orthopedic Surgery, Korea Institute of Radiological and Medical Science). The cells were cultured in Dulbecco’s modified Eagle’s medium (Gibco BRL, Gaithersburg, MD) containing 10% FBS (Gibco BRL) and 1% penicillin/streptomycin (100 U/mL) at 37 °C in a humidified incubator under 5% CO2. This study used doxorubicin (D1515, Sigma, St. Louis, MO), KU-55933, an ATM inhibitor, (SML1109, Sigma), and olaparib, a PARP inhibitor (SC-302017, Santa Cruz Biotechnology, Santa Cruz, CA). The vector for SIRT6-specific shRNA was purchased from GenePharma Co. (GenePharma, Shanghai, China). The SIRT6 duplex had the sense and antisense sequences 5′-CACCGCTACGTTGACGAGGTCATGATTCAAGAGATCATGACCTCGTCAACGTAGCTTTTTTG-3′ and 5′-GATCCAAAAAAGCTACGTTGACGAGGTCATGATCTCTTGAATCATGACCTCGTCAACGTAGC-3′, respectively [16]. A pFLAG-CMV-2 plasmid vector was used as a control vector. The vector overexpressing wild-type SIRT6 (pFLAG2_SIRT6) was synthesized by Cosmogenetech Co. Ltd. (Cosmogenetech Co. Ltd, Seoul, Korea) [16]. Transfection was performed using Lipofectamine 3000 (Invitrogen, Carlsbad, CA).
Cell proliferation assay and colony-forming assay
The proliferation of cells was evaluated with the Cell Proliferation ELISA, BrdU (colorimetric) assay (Roche, Mannheim, Germany) and colony-forming assay. The BrdU assay was performed with seeding of U2OS (0.8×103) and KHOS/NP (0.8×103) cells on 96-well plates and measured with Bio-Rad model 680 microtiter plate reader (Bio-Rad, Hercules, CA) at a wavelength of 370 nm. The colony-forming assay was performed by plating U2OS cells (2×103) and KHOS/NP cells (2×103) in 24-well culture plates. The culture plates were stained with 0.01% crystal violet (Sigma) seven days after seeding. The number of colonies was quantified by using the Colony Area ImageJ Plugin (https://imagej.nih.gov/ij).
Western blot analysis and immunoprecipitation
The cells were lysed with Mammalian Protein Extraction Reagent (Thermo Fisher Scientific, Rockford, lL) containing 1× phosphatase inhibitor cocktails 2, 3 (Sigma). For immunoprecipitation, 500 μg of protein precleared with Mammalian Protein Extraction Reagent was incubated with antibodies, as indicated, overnight and then with protein G-agarose (Thermo Fisher Scientific) for two hours. Cell lysates were separated by 10% SDS-PAGE and transferred to PVDF membranes. The blot was probed with primary antibodies. The primary antibodies used for western bolt were SIRT6 (Cell Signaling Technology), cleaved PARP1 (Cell Signaling Technology), cleaved caspase 3 (Cell Signaling Technology), BCL2 (Santa Cruz Biotechnology), BAX (Santa Cruz Biotechnology), Chk2 (Thr68) (Cell Signaling Technology), phosphorylated Chk2 (p-Chk2, Cell Signaling Technology), ATM (Cell Signaling Technology), phosphorylated ATM (Ser1981) (p-ATM, Cell Signaling Technology), P53 (Santa Cruz Biotechnology), phosphorylated P53 (Ser15) (p-P53,Santa Cruz Biotechnology), H2AX (Cell Signaling Technology), γH2AX (Cell Signaling Technology), IgG (Cell Signaling Technology), and GAPDH (Santa Cruz Biotechnology). The bands of western blot were quantified using an ImageJ software (https://imagej.nih.gov/ij).
Flow cytometry analysis for apoptosis
Apoptosis was assessed via flow cytometry analysis with staining for FITC-conjugated annexin V and propidium iodide using the apoptosis detection kit (Invitrogen). The suspended cells in 100 μL of binding buffer at a concentration of 1x106 cell/mL were incubated with 5 μL of annexin V-FITC and 5 μL of propidium iodide for 15 min at room temperature in the dark. The samples were analyzed using a BD FACSCalibur system (Becton-Dickinson, San Jose, CA).
Orthotopic tumor model
In the orthotopic xenograft model, six-week-old male BALB/c nude mice (Orient Bio, Gyeonggi-Do, Korea) were used. The tumor in the right proximal tibia was induced by injecting 2.5×106 KHOS/NP cells transfected with empty vectors, shRNA for SIRT6, or plasmid for wild-type SIRT6 into the marrow space under anesthesia. Four mice were used in each group. Two weeks after tumor cell inoculation, mice were injected intraperitoneally with doxorubicin (4 mg/kg in dimethyl sulfoxide) once a week. The body weight and tumor volume were measured every five days. The tumor volumes were calculated as “length x width x height x 0.52”. The animals were euthanized with sodium pentobarbital at 20 days after treatment with doxorubicin. Histologic sections of the resected tumors were stained with hematoxylin and eosin and immunohistochemical staining for SIRT6 and Ki67. The tissue sections from the tumor were incubated with anti-SIRT6 (Cell Signaling Technology, Beverly, MA) and anti-Ki67 (Clone MIB-1, DAKO, Glostrup, Denmark) antibodies. Immunohistochemical staining for Ki67 was quantified as the percent of tumor cells with nuclear expression of Ki67. The amount of apoptosis in resected tumors was evaluated with a Terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) assay using the DeadEnd colorimetric TUNEL system (Promega, Madison, MA). To quantify TUNEL-positive cells, ten microscopic images were obtained in each tumor with a 40x objective lens (Plan Apo40/0.95NA, Nikon, Japan) and a digital camera (Nikon DXm1200F, Nikon, Japan). The area of one microscopic image was 0.086 mm2. Therefore, 0.86 mm2 per tumor was evaluated to count the number of TUNEL-positive cells. Animal experiments were approved by the institutional animal care and use committee of Jeonbuk National University (approval number: CBNU 2018-109).
Statistical analysis
Immunohistochemical positivity for SIRT6 was determined by receiver operating characteristic curve analysis. The cut-off point was determined at the point with the highest area under the curve to predict the death of osteosarcoma patients [15, 20, 28]. The prognosis of osteosarcoma patients was evaluated for overall survival (OS) and relapse-free survival (RFS). The endpoint of follow-up was June 2014. An event in OS analysis was the death of the patient from osteosarcoma and the duration was calculated from the date of operation to the date of death or last follow-up. An event in RFS analysis was a relapse of any type and death from osteosarcoma and the duration was calculated from the date of operation to the date of the event or last follow-up. Statistical analysis for survival was performed by univariate and multivariate Cox proportional hazards regression analyses and Kaplan-Meier survival analysis. The significance between the evaluated factors was evaluated with the Pearson's χ2 test and the Student’s t-test. All experiments were performed in triplicate, and representative data are presented. SPSS software (IBM, version 20.0, CA) was used throughout, and P values less than 0.05 were considered statistically significant.