3.1 Evaluation of the growth and production of enzymes in sugarcane bagasse
In Figure 1, the growth profiles of the different species in sugarcane bagasse medium are shown as a function of incubation time. It was found that all basidiomycetes species tested were able to colonize the medium.
It was observed that the species that apparently presented the greatest formation of mycelium were S. commune VE07, reaching about 0.25±0.004 g of mycelium per g of dry biomass (g/g), followed by P. sanguineus OU04, M. palmivorus VE111, P. sanguineus PR32 and T. villosa 82I6, which reached, respectively, 0.18±0.005, 0.16±0.001, 0.13±0.012 and 0.11±0.005 g/g. The two species that presented the lowest growth were P. albidus 88F-13 (0.07±0.006 g/g) and P. pulmonarius PS2001 (0.05±0.003 g/g).
When comparing the growth data of P. albidus 88F-13 in other lignocellulosic residues, Stoffel et al. [43] detected growth of 0.13 g/g of mycelium when grown in brewer spent grain and 0.03 g/g in grape bagasse. Although Stoffel et al. [43] used the determination of indirect growth through the dosage of ergoesterol, it is noticed that there is coherence between the growth data, indicating that the growth is variable according to the substrate used for the cultivation of the fungi.
The differences observed during growth may be due to several factors, among others firstly to the characteristics of the strain, the presence of macronutrients and micronutrients required for the species, the type of substrate and the pH of the medium [26], [44]. Biological pretreatment has been associated with modifications to the biomass via the action of enzymes produced during colonization. These enzymes act at specific substrate locations, and may degrade polyphenols in the lignin and also degrade the structure of the hemocellulose heteropolysaccharide, in addition to reaching cellulose fibers [45], [23], [18].
The enzymatic complex responsible for the degradation of lignin is composed of laccases and peroxidases [46]. The lignin peroxidase degrades non-phenolic units and manganese peroxidase acts on phenolic and non-phenolic lignin units [47]. Laccases are phenol-oxidases that act together with the peroxidases to oxidize phenolic components, leading to the complete degradation to CO2 and H2O [48], [49].
The hydrolysis of hemicellulose, a polysaccharide that forms a reticulated structural network and contributes to the integrity of the vegetal cell wall, is catalyzed by xylanases [47]. Endoglucanases act at randomly at various sites in the amorphous regions of the cellulose fiber, reducing the degree of polymerization and opening sites for the further action of cellobiohydrolases [50]. Endoglucanases and cellobiohydrolases act in synergy in cellulose hydrolysis [51] and β-glucosidases hydrolyze cellobiose and cellulose oligosaccharides to glucose. The presence of these enzymes during pretreatment may be favorable to the process, provided that the microorganism does not use the sugars resulting from the action of this set of enzymes in its metabolism, since all sugars are important to the fermentation process. Therefore, it is necessary to evaluate the species of basidiomycetes in order to identify those that are able to promote the delignification of the biomass, but that have little or no metabolic activity for the use of cellulose and hemicellulose [52]. Thus, the production of different enzymes that act on these biomass components was evaluated.
Figure 2 shows the data on the production of laccases, manganese peroxidases, total peroxidases, β-glucosidases, endoglucanases, and xylanases, as well as filter paper activity (FPA) by basidiomycete species as a function of incubation time.
Regarding the production of laccases, it was observed that M. palmivorus VE111 stood out, showing increasing activity until day 42 of the process, with a peak of 1985±235 U/g. The species P. pulmonarius PS2001 and P. sanguineus PR32, followed by P. albidus 88F-13, achieved activities of 1256±65, 1185±89 and 785±72 U/g, respectively, at 35 days of culture (Figure 2A).
It was observed that the species that produced the highest amounts of manganese peroxidases were P. albidus 88F-13 (21.3±2.6 U/g), presenting increasing activities in up to 21 days of cultivation, and P. pulmonarius PS2001 (21±3.7 U/g) and T. villosa 82 I6 (17±1 U/g), which showed increasing activities in up to 14 days of cultivation (Figure 2 B).
The species that excelled in the production of total peroxidases were M. palmivorus VE111, which presented an enzymatic peak of 518±31 U/g after 28 days of the process, followed by P. pulmonarius PS2001 (472±48 U/g in 42 days) and P. albidus 88F-13 (423± 35U/g in 21 days). P. pulmonarius PS2001, P. albidus 88F-13 and T. villosa 82I6 showed low β-glucosidase activities throughout the entire culture period. The P. sanguineus strains PR32 and OU04 presented the maximum activity of β-glucosidase, i.e. 7.1±1.0 and 6.0±0.4 U/g, respectively, after 35 days. S. commune VE07 and M. palmivorus VE111 had an enzymatic peak of 3.9 ±0.4 and 3.9±0.9 U/g, respectively, after 21 days (Figure 2D).
The endoglucanase activities were low for all evaluated species; M. palmivorus VE111 was the species that presented the lowest activity of this enzyme, reaching only 0.09±0.005 U/g. P. albidus 88F-13 showed an enzymatic peak of 0.2±0.05 U/g after 7 days of culture. At 21 days, S. commune VE07 had maximum activity of 0.3±0.03 U/g. For the other species, the activities increased throughout the process, reaching values close to 0.3 U/g at the end of 49 days (Figure 2E).
The species that presented the highest FPA activity at the end of 49 days of cultivation was T. villosa 82I6 (2.3±0.1 U/g), followed by P. sanguineus OU04, which had a peak activity of 1.4±0.1 U/g after 35 days of incubation. In general, the tested species showed low values of this enzyme activity (Figure 2F).
In relation to xylanase production, S. commune VE07 showed the highest activity of 6.5±0.2 U/g after 21 days of culture, followed by P. albidus 88F-13, which presented an activity of 6.0±1.1 U/g at 35 days. T. villosa 82I6 presented an enzymatic peak of 5.5±1.2 U/g after 42 days of processing. After the maximum activities were reached, these species sustained activities on the order of 4.5 U/g until the end of the process (Figure 2G).
It was evident that the studied species secreted different enzymatic complexes, which resulted in differences in the degradation of the components of the sugarcane bagasse. However, when cell growth was related to the production of enzymes by P. pulmonarius PS2001, P. albidus 88F-13 and T. villosa 82I6, these species showed lower mycelial formation and produced high amounts of laccases and peroxidases. However, according to Leisola et al. (2012) [53], the secretion of enzymes capable of degrading lignin by white rot fungi has some peculiarities. Among them is the fact that lignin is degraded only after nutrient depletion, which triggers the secondary metabolism of the microorganism.
3.2 Evaluation of basidiomycetes biodegradation patterns by FTIR spectroscopy
FTIR spectroscopy was performed focusing on the bands corresponding to cellulose, hemicelluloses and lignin (Table 2). Five bands were evaluated: 1515 cm-1 (aromatic skeletal vibrations in lignin), 1427 cm-1 (syringyl and guaiacyl condensed nuclei), 1375 cm-1 (cellulose and hemicelluloses), 1098 cm-1 (crystalline cellulose) and 898 cm-1 (amorphous cellulose). The analysis of these spectra in terms of percent modifications of each treated sample relative to the control sample (non-pretreated) and the weight losses after pretreatment is shown in Table 2.
It is possible to estimate the degree of degradation of the substrate through the weight loss of the lignocellulosic biomass after cultivation [18]. The species that promoted significantly higher weight loss than the other species was P. albidus 88F-13 (40.9%±0.7). The species P. pulmonarius PS2001, T. villosa 82I6, P. sanguineus OU04 and PR32, promoted statistically equivalent weight loss. M. palmivorus VE111 presented significantly lower weight loss (19.9%±2.3) than that observed in pretreatments with the other strains. Weight losses are obviously associated with the growth of each fungus and are the result of the transformation of plant biomass into fungal biomass and CO2 generation [3].
Decreases were observed in all FTIR bands analyzed after pretreatment; however, the modifications in the different bands were different between the biological pretreatments. Only S. commune VE07, which also presented a minor degree of weight loss, had null reduction values for all bands. This species probably consumed small amounts of biomass components, which was not possible to be detect by FTIR (Table 2).
The 1515 cm-1 band, related to the aromatic skeletal vibrations in lignin, showed the most pronounced decrease, indicating that lignin degradation occurred in all pretreatments, except for S. commune VE07. T. villosa 82I6, P. pulmonarius PS2001, P. albidus 88F-13, P. sanguineus PR32 and OU04 presented the largest reductions in this band and were statistically the same (reduction around 30%). Reductions in the 1427 cm-1 band (syringyl and guaiacyl condensed nuclei) corroborate the suggestion that there was a reduction in the amount of lignin present in the biomass. P. sanguineus PR32 presented a stronger reduction in this band compared to the other tested species (Table 2).
Decreases in the bands at 898 cm-1 (amorphous cellulose) and 1098 cm-1 (crystalline cellulose) were clear indications of the degradation of cellulose. The reduction in these bands was especially pronounced in the pretreatment performed with P. sanguineus PR32, which presented values superior to all species tested, followed by P. albidus 88F-13. In the band at 1375 cm-1 (cellulose and hemicellulose), again P. sanguineus PR32 resulted in the greatest reduction. It should be highlighted that cellulose degradation is considered a disadvantage in the process, since the sugars required in the hydrolysis step are provided by this fraction of the biomass; thus, the consumption of cellulose will result in a decrease in productivity (Table 2).
It was also observed that the strains OU04 and PR32 of P. sanguineus presented differences in substrate degradation. While the PR32 strain promoted a high reduction in all bands analyzed by FTIR, the OUO4 strain promoted a considerable reduction in the lignin bands, a minor reduction in the hemicellulose band and null reduction in the cellulose bands (Table 2). This differential degradation can be attributed to the differences between the metabolisms of the strains, such as the secretion of different enzymatic complexes. This demonstrates the importance of selecting different isolates of the same species.
The degradation of lignin by basidiomycetes is associated with variable levels of sugar consumption, obtained from holocellulose hydrolysis for growth requirements. For this reason, it is important to achieve a state of balance between both pathways. When selecting a basidiomycete for biological pretreatment, both parameters should be considered, since they represent a significant effect on the economics of the process. The best results will be those in which the reduction of lignin is the highest with the lowest sugar consumption, in a shorter period of time [54].
It is worth mentioning that the species T. villosa 82I6 and P. pulmonarius PS2001 presented favorable proportions between the consumption of cellulose, hemicellulose and lignin. In other words, they presented high reductions in lignin bands and low reductions in holocellulose bands. According to Lee et al. (2007) [55], this demonstrates that the system of hydrolytic enzymes secreted by these microorganisms did not efficiently degrade the holocellulose present in the biomass. As discussed earlier in Figure 2, these species showed low FPA and low β-glucosidase, endoglucanase and xylanase activities.
3.3 Microscopic analysis
Scanning electron microscopy of the sugarcane bagasse was performed to verify the structural changes caused after 49 days of biological pretreatment (Figure 3). The control sample (untreated) showed more ordered structures and some pores on the order of 1 μm. After pretreatment, the structures were modified, and the biomass was covered with fungal mycelia, resulting in fiber detachment and the appearance of larger pores and cracks in some cases. In pretreatments with the species P. sanguineus PR32 and OU04 and P. pulmonarius PS2001 and P. albidus 88F-13, it was observed that the sugarcane bagasse was totally enveloped by the fungal mycelium. In the pretreatment with T. villosa 82I6, the biomass modification was more evident, in which, besides the presence of mycelia, disorganization of the structure of the biomass, cracks and an increase in the surface pore size (to about 6 μm).
Castoldi et al. (2014) [3] observed the formation of pores on the surface of eucalyptus sawdust pretreated with P. pneumarius, Trametes sp. and Ganoderma lucidum. These structural changes in pretreated samples may favor cellulose exposure [56]. The appearance of pores results in a greater available surface area and is generally considered an indication of increases in the accessibility of cellulose to enzymatic attack [57].
3.4 Enzymatic hydrolysis of pretreated sugarcane bagasse
The sugarcane bagasse pretreated with macromycetes was used in enzymatic hydrolysis assays in order to evaluate possible alterations in the release of sugars. In biomass hydrolyses pretreated with P. sanguineus OU04 and PR32 strains, glucose yields were null. For the pretreatments performed with the other species, after 24 hours of hydrolysis, the digestibility of the cellulose present in the pretreated sugarcane bagasse for 49 days was shown (Figure 3). Digestibility could represent the conversion yield of the raw material into fermentable sugars [18]. The digestibility of cellulose is the percentage of glucose released during enzymatic hydrolysis in relation to the theoretical maximum present in the biomass [54]. The chemical composition of sugarcane bagasse used in these experiments was 1.7±0.6% extractable components, 33.9±1.2% cellulose, 15.2±1.4% hemicellulose, 7.9±0.6% soluble lignin, 21.1±0.5% insoluble lignin and 5.9±1.8% ash.
It was observed that M. palmivorus VE111 treatment caused a decrease in digestibility (3.5 ± 0.7%) in relation to the control (12.9±2.4%). P. pulmonarius PS2001 presented similar digestibility to the control (12.8±8.0%), while P. albidus 88F-13, S. commune VE07 and T. villosa 82I6 species increased this parameter to 15.7±1.8%, 15.5±2.0% and 22.8±1.2%, respectively. It is worth mentioning that the species that promoted the greatest increase in digestibility, T. villosa 82I6, was the one that caused the greatest reduction in the percentage of total lignin present in the biomass (Figure 4).
In Figure 5, sugar and glucose release graphs are shown over time during the enzymatic hydrolysis of pretreated samples at different time points (7 to 49 days). The graphs refer to the pretreatments performed with the species that presented digestibility equal to or greater than the control. With regard to the hydrolysis of sugarcane bagasse pretreated with S. commune VE07, it was observed that both the release of reducing sugars and glucose formation were lower than the control.
In the hydrolysis of sugarcane bagasse pretreated with P. albidus 88-F13 and P. pulmonarius PS2001, in the first 21 and 14 days of pretreatment, respectively, a reduction in the release of reducing sugars was observed in relation to the control (Figures 6E and 6C). The same behavior was observed for glucose release in samples treated for up to, respectively, 35 and 21 days (Figures 6F and 6D). Only with longer periods of pretreatment was there an increase in the release of reducing sugars, including glucose, when compared to the control. It is likely that, in the first days of biological pretreatment, these strains consumed the accessible polysaccharides of the biomass, without the liberation of biomass deconstruction enzymes.
It is interesting that, in the pretreatment with T. villosa 82I6, an increase in the release of reducing sugars (Figure 5G) and glucose (Figure 5H) was observed in relation to the control, from the first days of biological pretreatment.
It is noteworthy that, for all pretreatments, the time of the enzymatic deconstruction process could be decreased from 24 hours to 12 hours, since after the initial period there was no increase in sugar release. In addition, it was observed that the amount of glucose released during the enzymatic hydrolysis process was practically half of the reducing sugars released during the same period of time.
Figure 6 shows the analysis of glucose release in 24 hours of enzymatic hydrolysis from samples pretreated biologically for different periods of time.
In the enzymatic hydrolysis carried out with sugarcane bagasse pretreated with P. albidus 88F-13, it was observed that, in the samples pretreated for 42 and 49 days, glucose release was statistically equal to the control (48.5±2.38 mg/g), i.e. 45.4±2.6 and 56.7±1.7 mg/g, respectively. However, there was a trend towards increased glucose uptake with increasing pretreatment time, which may indicate the need for longer periods of pretreatment time (Figure 6A) or the use of a higher inocula concentration. Samples pretreated with P. pulmonarius PS2001 obtained statistically higher amounts of glucose were obtained in samples with pretreatment times of 35, 42 and 49 days (68.4±0.7, 76.3±1.6 and 76.5±2.1 mg/g) (Figure 6B). In the pretreatment with T. villosa 82I6, it was observed that samples collected at 21, 28 and 49 days released amounts of glucose statistically superior to the control (70.9±8.3, 77.8±5,8 and 77.6±4.2 mg/g) (Figure 6C).
It should be emphasized that decreasing the process time is one of the factors that interferes in the productivity and final cost of a product. Decreasing pretreatment time is the main challenge for this area. Thus, among the strains that proved to be efficient in the biological pretreatment, T. villosa 82I6 stood out among the tested species, since from day 21 of cultivation it promoted greater release of glucose and reducing sugars from sugarcane bagasse, in relation to the control. However, this time possibly could be shortened if more concentrated inocula were employed.
3.5 Fermentation
The evaluation of ethanol production is necessary to quantify the process final performance [58]. Since samples pretreated with T. villosa 82I6 presented better results in the hydrolysis stage, the hydrolysates of samples pretreated with this strain were fermented using the CAT-1 strain of Saccharomyces cerevisiae. Figure 7 shows the concentrations of sugars (glucose and xylose) and the concentration of ethanol over 24 hours of alcoholic fermentation of the sugarcane bagasse hydrolysates pretreated with T. villosa 82I6 at different times.
Evaluating the pretreated samples, it was observed that the initial amount of sugars as well as the concentration of ethanol reached in all pretreated samples were higher than in the control (Figure 7A). It was also found that, under all conditions, total glucose uptake occurred during the first 4 hours of fermentation. Decreases in the glucose concentration coincide with increases in the ethanol concentration. The xylose content remained constant throughout the fermentation process in all the samples, since the yeast used is not able to metabolize this sugar. Regarding the amount of available xylose, values around 1 mg/mL were observed in all conditions.
Table 3 shows the maximum ethanol yield from biomass. From the hydrolyzate of the control sample, a maximum yield of 10.1±0.8 mg/g was obtained. That is, for each gram of biomass used, 10.1±0.8 mg of ethanol were obtained. The samples pretreated for 7, 14, 21, 35 and 42 days presented ethanol yields statistically equal to the control. Samples pretreated for 28 and 49 days showed significantly higher ethanol yields, corroborating the data shown in Figure 4C, in which it was observed that the glucose obtained in the hydrolysis of samples pretreated for 28 and 49 days was superior to the control. Based on this result, there was a positive influence of biological pretreatment on the subsequent stages of the process.
A disadvantage of the biological pre-treatments mentioned in the literature is the long time for this type of pre-treatment, but as the biomass is never used all at the same time, being stored, this pre-treatment can be carried out at this moment, therefore, even faster than other processes the same goal.