Chemicals and reagents
CoQ0 (HPLC ≥99%, CAS 605-94-7) was obtained from J&K Scientific Co., Ltd (Beijing, China) and dissolved in dimethyl sulfoxide (DMSO) for use in all experiments. The final concentration of DMSO in all sample solutions was 0.1% (v/v), which has no apparent effect on the growth of C. sakazakii. All other chemicals were of analytical grade and were unaltered.
Bacterial strains and culture conditions
C. sakazakii strains ATCC 29004 and ATCC 29544 were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). Strain ATCC 29004, which is a relatively strong biofilm producer, was used in the biofilm assay. Prior to each assay, bacteria were inoculated onto tryptic soy agar (TSA) medium and incubated at 37°C for 12 h. To obtain fresh overnight cultures, a single colony was inoculated into 30 mL of tryptic soy broth (TSB) medium and incubated with shaking at 130 rpm for 12 h at 37°C. Following incubation, cultures were centrifuged (4°C, 8000 × g, 5 min), washed three times with sterile phosphate-buffered saline (PBS), and diluted in TSB medium to an optical density at 600 nm (OD600) of 0.5 (approximately 4 × 108 colony-forming units (CFU)/mL).
MICs and SICs determinations
The MICs and SICs of CoQ0 against C. sakazakii ATCC 29004 and ATCC 29544 were determined as described previously [33], with some modifications. Briefly, overnight bacterial culture was diluted 400× in TSB medium (approximately 1 × 106 CFU/mL) before 125 μL of the diluted culture were added to individual wells of a 96-well plate. Equal volumes of CoQ0 solution were gently added to each well to achieve final CoQ0 concentrations of 0 (control), 0.8, 1.6, 3.2, 6.4, 12.8, 25.6, and 51.2 μg/mL. TSB medium containing 0.1% DMSO was used as the negative control. Plates were incubated at 37°C for 24 h, and cell growth was monitored at 600 nm at 1-h intervals using a microplate reader (Model 680; Bio-Rad, Hercules, CA, USA). The MIC of CoQ0 was defined as the lowest concentration at which there was no visible growth of C. sakazakii. SICs of CoQ0 were defined as concentrations at which no significant inhibition of C. sakazakii growth was observed.
Inhibition of specific biofilm formation (SBF) assay
The inhibition of SBF assay was carried out using a crystal violet staining method as described previously [34], with minor modifications. Briefly, an overnight culture of C. sakazakii ATCC 29004 was diluted in TSB medium to an OD600 of 1.0. CoQ0 was added to culture aliquots to obtain final concentrations of 0 (control), 1.6, 3.2, and 6.4 μg/mL. Aliquots (200 μL) of the mixtures were then pipetted into individual wells of a 96-well plate. Uninoculated TSB containing 0.1% DMSO was used as the negative control. Plates were incubated statically at 37°C or 25°C for 24, 72, or 120 h and the absorbance of the mixtures was monitored using a microplate reader (Model 680; Bio-Rad) at 630 nm. Following incubation, bacterial cultures were aspirated and the plates were washed with 300 μL of distilled water before being air-dried for 30 min. The wells were stained with 250 μL of 1% (w/v) crystal violet (Tianjin Kermel Chemical Regent Co., Ltd, Tianjin, China) for 20 min and any excess stain was removed using sterile distilled water. After drying for 30 min, 250 μL of 33% (v/v) glacial acetic acid was added to each well and the plates were shaken at ambient temperature for 20 min. The biofilm biomass in each well was quantified by measuring the OD at 570 nm. The SBF was determined from the ratio of the OD570 and OD630 values.
SEM observation
Confirm the effects of CoQ0 on biofilm formation, the C. sakazakii ATCC 29004 biofilms were further analyzed by SEM as described previously [31], with minor modifications. Briefly, C. sakazakii ATCC 29004 cultures (OD600 = 1.0) mixed with CoQ0 solution (6.4, 3.2, 1.6, or 0 μg/mL) were added to individual wells of a 24-well plate containing sterile glass slides of the same diameter as the bottoms of the wells. Culture without CoQ0 was used as a control. Following incubation at 25°C for 48 h, culture supernatants were removed, and the samples were fixed with 2 mL of 2.5% (v/v) glutaraldehyde overnight at 4°C. The glass slides were then removed and washed with sterile PBS, followed by treatment with 1% (v/v) osmic acid at 4°C for 5 h. Subsequently, the glass slides were dehydrated using a graded ethanol series (30%, 50%, 60%, 70%, 80%, 90%, and 100%). After being dried and coated with gold, the slides were examined under a field-emission scanning electron microscope (S-4800; Hitachi, Tokyo, Japan) at 4000× and 1500× magnification.
CLSM observation
To examine the effects of CoQ0 on the viability of biofilm-associated C. sakazakii ATCC 29004 cells, biofilms were next strained using a LIVE/DEAD BacLight Bacterial Viability Kit (Thermo Fisher Scientific, Waltham, MA, USA), consisting of SYTO 9 and propidium iodide (PI) dyes. Biofilms were cultured on stainless steel coupons in a 24-well plate in the presence or absence of CoQ0, as described in section 2.5. Following removal of the supernatant, the plate was washed twice with sterile water. Stainless-steel coupons were then stained with STYO 9 and PI in the dark for 8 min as per the manufacturer’s instructions. After being washed with sterile water, the stained biofilms on the stainless-steel coupons were examined using a confocal laser scanning microscope (A1; Nikon, Tokyo, Japan).
Motility assay
Swimming and swarming motility assays were conducted as described previously [35], with minor modifications. Bacterial swimming motility assays were conducted using 20 mL of LB broth containing 0.3% (w/v) agar, while swarming motility assays were conducted in 20 mL of LB broth supplemented with 0.5% (w/v) agar and 0.5 (w/v) glucose. CoQ0 was added to the warm media (45°C) to achieve final concentrations of 0 (control), 1.6, 3.2, and 6.4 μg/mL, and the resulting mixtures poured into Petri dishes. The resulting agar plates were dried at ambient temperature for 1 h. Aliquots (5 μL) of bacterial cultures (OD600 = 0.5) were then inoculated onto the center of each plate and incubated upright at 37℃ for 7 h. Images of the resulting bacterial halos and swarm areas were obtained using a Gel Imaging System (Bio-Rad).
Cell culture
HT-29 human colon carcinoma cells (ATCC) were maintained in Dulbecco’s Modified Eagle Medium/Nutrient Mixture F-12 (DMEM/F-12) (Gibco, Grand Island, NY, USA). RAW 264.7 murine macrophage cells (ATCC) were cultured in DMEM (Gibco). Culture media were prepared as described by Shi et al. [33]. Cell lines were maintained at 37°C in a humidified 5% CO2 atmosphere.
Adhesion and invasion assay
The effects of CoQ0 on bacterial adhesion and invasion were examined as described previously [36], with some modifications. For both assays, HT-29 cells in DMEM/F-12 were inoculated into 24-well plates (105 cells/well) and incubated overnight before being washed twice with sterile PBS. Aliquots of C. sakazakii ATCC 29544 culture (OD600 = 0.5) were mixed with CoQ0 solution (6.4, 3.2, 1.6, 0.8, or 0 μg/mL final concentration) and cultured at 37°C for 6 h. Bacterial cultures were then washed with sterile PBS and the cell pellets resuspended in TSB medium to an OD600 of 0.5 (approximately 4 × 108 CFU/mL). Cultures were diluted 40× in DMEM/F-12 and inoculated onto the HT-29 cell monolayers at a multiplicity of infection (MOI) of 10. Following centrifugation (600 × g, 5 min), the plates were incubated in a humidified, 5% CO2 incubator at 37°C for 2 h.
For adhesion assays, the incubated plates were rinsed three times with sterile PBS and the cells lysed by the addition of 1 mL of 0.1% (v/v) Triton X-100 (Amresco, Solon, OH, USA) followed by incubation at 4°C for 20 min. The lysed cells were then serially diluted in sterile PBS and plated on TSA for colony counting. For invasion assays, the incubated plates were washed once with sterile PBS and 1 mL of DMEM/F-12 containing gentamicin (100 μg/mL; Amresco) was added to each well. The plates were then incubated for a further 45 min to kill the extracellular bacteria. Following incubation, the cells were washed three times before being lysed by the addition of 1 mL of 0.1% (v/v) Triton X-100 followed by incubation at 4°C for 20 min. The lysed bacteria were then serially diluted and plated on TSA for colony counting. Results were expressed as the percentage of colonies on the treatment plates relative to those on the control plates.
Intracellular survival and replication assay
The effects of CoQ0 on the intracellular survival and replication of C. sakazakii ATCC 29544 in RAW 264.7 cells were examined as described previously [34], with some modifications. RAW 264.7 cells cultured in DMEM were seeded into 24-well plates (105 cells/well) and incubated at 37°C in a humidified atmosphere with 5% CO2 for 16 h. Aliquots of bacterial suspension (OD600 = 0.5) were mixed with CoQ0 at a final concentration of 0 (control), 0.8, 1.6, 3.2, or 6.4 μg/mL and incubated at 37°C for 6 h. Following incubation, the suspensions were washed once with sterile PBS and the resulting cell pellets resuspended in TSB to an OD600 of 0.5 (approximately 4 × 108 CFU/mL). The cell suspensions were then diluted in DMEM to a density of 1 × 106 CFU/mL and inoculated onto the RAW 264.7 cell monolayers at a MOI = 10. Following incubation at 37°C in the presence of 5% CO2 for 2 h, the plates were rinsed once with sterile PBS, and 1 mL of DMEM containing gentamicin (100 μg/mL) was added to each well. The plates were then incubated for a further 45 min.
For the intracellular survival assays, the incubated plates were rinsed with sterile PBS and the cells lysed by the addition of 1 mL of 0.1% (v/v) Triton X-100 followed by incubation at 4°C for 20 min. The lysed cells were serially diluted before being plated on TSA plates. The results are expressed as the number of viable C. sakazakii cells (CFU/mL) before and after CoQ0 treatment. Infected cells that were not treated with CoQ0 were used as the control. For the intracellular replication assay, the incubated plates were again rinsed with sterile PBS and 1 mL of DMEM containing gentamicin (10 μg/mL) was added to each well. Following incubation at 37°C in the presence of 5% CO2 for either 24 h or 48 h, the cells were lysed, serially diluted, and plated on TSA plates, as described in the intracellular survival assay.
Isolation of RNA and RT-PCR assays
To assess the effects of CoQ0 on the expression of virulence genes (Table 1), C. sakazakii ATCC 29004 was cultured in the presence (1.6 or 3.2 μg/mL) or absence (control) of CoQ0 at 37°C for 8 h. Total RNA was then extracted from each culture using an RNA Prep Pure Cell/Bacteria Kit (Tiangen, Beijing, China) as per the manufacturer’s instructions. The quality and concentration of the extracted RNA were determined using a nucleic acid and protein spectrophotometer (Nano-200; Aosheng Instrument Co., Ltd, Hangzhou, China). RNA was then reverse-transcribed into cDNA using a Takara PrimeScript RT Reagent Kit (Takara, Dalian, China) as per the manufacturer’s instructions. RT-PCR assays were carried out in 25-μL reaction volumes with SYBR Green reagents (Takara) using an IQ 5 Multicolor Real-Time PCR Detection System (Bio-Rad). The reaction parameters included an initial denaturation at 95°C for 30 s, followed by 40 cycles of 95°C for 5 s and 60°C for 30 s, with a dissociation step of 95°C for 15 s and 60°C for 30 s. Specific primers corresponding to each of the target genes (Table 1) were based on those from previous reports [24, 37]. The 16S rRNA gene was used as an internal control for normalization of gene expression. The 2−∆∆Ct method was used to compare the expression of genes from different samples [38]. The means and standard deviations were calculated from triplicate experiments.
Table 1 Primers used in this study.
Primers
|
Gene amplified
|
Primer sequences (5′–3′)
|
16S rRNA
|
Control-RT- F
|
CCAGGGCTACACACGTGCTA
|
Control- RT-R
|
TCTCGCGAGGTCGCTTCT
|
bcsA
|
bcsA -RT- F
|
CACGATGGTGGCGTTGTTC
|
bcsA - RT-R
|
CCTTTGGCGGGTGACGTTAA
|
fliD
|
fliD -RT- F
|
AAAACCGCAACATGGAATTCA
|
fliD - RT-R
|
CCGCAAACGCGGTATTG
|
flgJ
|
flgJ -RT- F
|
GACGGCGGGCAAAGG
|
flgJ - RT-R
|
GCCGCCCATCTGTTTGAC
|
motA
|
motA -RT- F
|
GGTGTGGGTGCGTTTATCGT
|
motA - RT-R
|
GCCTTCAGCGTGCCTTTG
|
motB
|
motB -RT- F
|
ACGGCTCGTGGAAAATCG
|
motB - RT-R
|
CCAGGAAGAAGGCCATCATG
|
ompX
|
ompX -RT- F
|
GTCTTTCAGCACTGGCTTGTGT
|
ompX - RT-R
|
GGTGCCAGCAACAGCAGAA
|
uvrY
|
uvrY -RT-F
|
GCGAGGACGCCATCAAAT
|
uvrY -RT-R
|
ATCCATCAGCACCACATCCA
|
lpxB
|
lpxB -RT-F
|
GCACGACACTTTCCGTAAACTG
|
lpxB -RT-R
|
CGCCTGTTCATCGGCATT
|
bcsG
|
bcsG -RT-F
|
ACGACTGGCTAACAGCTTTTAC
|
bcsG -RT-R
|
GCCGGGAAGGTTGTCTGA
|
Statistical analyses
All experiments were carried out independently three times. The data were presented as means ± standard deviations (SD) and analyzed using SPSS 23.0 software (IBM, New York, NY, USA). A Student’s t-test was used to analyze differences between means. Differences were considered statistically significant at P<0.05 and extremely significant at P<0.01.