Plant material
The certified seeds of Niger were procured from Zonal Agricultural Research Station, Igatpuri, Nashik (No. ADR/ZARS/Niger/seed./1088/2017), India. Seeds were surface sterilized with 0.1% (w/v) HgCl2 solution for 5 min, and rinsed with sterile distilled water for 5 times to remove the traces of HgCl2. Surface sterilized seeds were germinated on medium containing 3.0% (w/v) sucrose, 0.8% (w/v) agar-agar, and pH 5.8, and culture tubes maintained at 25±2°C temperature, 8 h photoperiod illuminated by cool fluorescent light (40 μmol m−2s−1). Then, leaves from in vitro germinated seedlings were excised and cultured on MS + 1.0 mg/l BAP for multiple shoot formation. The shoot producing cultures from leaf explants were maintained by culturing the leaf explants from four-week-old in vitro raised shoots on MS + 1.0 mg/l BAP. The four-week-old leaf derived shoots were used as source material for polyploidy induction.
Colchicine treatment, recovery, and maintenance of tetraploid shoots
The four-week-old in vitro developed shoots apical portion were treated by keeping the shoots in inverted position in liquid shoot regeneration medium (MS + 1.0 mg/l BAP) enriched with filter sterilized colchicine at concentration of 0.00, 0.005, 0.01, 0.02, 0.03, and 0.04 % and incubated at 25±2ºC in light exposure in static condition for 0, 4, 8, 12, and 16 h. The liquid shoot regeneration medium lacking colchicine served as a control. A total of 21 number of in vitro raised shoots were used per treatment in three replications. At the end of treatment time, the shoots were subjected to post-soaking in liquid MS medium for 10 min to remove the colchicine traces adhered to the explants and then washed four times with sterilized distilled water. After washing, the shoots were transferred to solid shoot regeneration medium. After four weeks, the survival rate of shoots, and the tetraploid induction rate were obtained. The newly elongated apical portion of shoots during the four weeks of incubation was excised and subculture on fresh shoots regeneration medium. Subsequently the newly formed shoot and leaf explants were transferred on shoot regeneration medium and multiplication of tetraploid and diploid shoots was carried out over a period of 12 months.
Confirmation of chromosome doubling
The in vitro produced shoots were checked by flow cytometry to identify level of polyploidy. The leaf sample was used for ploidy level determination. The samples (0.5 g) were chopped in 1.5 ml ice-cold Galbraith’s buffer solution (Galbraith et al. 1983) along with 0.1 % v/v Triton-X100. The suspension of nuclei was filtered using nylon syringe micro-filter 42μm; the nuclear DNA was suspended in RNAase A, and stained with propidium iodide, followed by incubation of suspension in dark for 30 min. prior to analysis (Dolezel et al. 2007). The Attune-Acoustic Focusing Flow Cytometer (Life Technologies, Thermo Fisher Scientific) was used to measure the fluorescence intensity of samples. The nuclear genome size was determined by following formula: 2C DNA content (pg) = sample G1 peak mean x standard 2C DNA content (pg) / standard G1 peak mean.
Counting of chromosome
Chromosome counting and observation was performed by following squashing method with slight modification described by Tsuro et al. (2016). The root tips 5-7 mm in length from four days old roots of in vitro grown shoots were excised and placed in ice water for 4 h. After cold treatment, roots were fixed in Carnoys solution for 24 h at room temperature. Before squash preparation, the roots were hydrolyzed in 1 N HCl for 5 min at room temperature. Then root tips were transferred to distilled water for 15 min. to remove the HCl. Subsequently, root tips were placed on glass slide, followed by removal of root cap, cut about 1.5mm root segment towards root cap and discard the rest portion of root. The root segment was stained with one drop of 1% aceto-carmine solution for 4 min, and squashed under cover glass by application of pressure with the help of thumb. Then the preparation was observed for chromosome number under light microscope at x40 and x100 magnifications (Leica Microsystems DM 3000 LED, Germany).
Morphological and leaf characters
Tetraploid G. abyssiniica were induced by the treatment of colchicine in the apical shoot tip of diploid G. abyssiniica. Mature tetraploid plants and control diploid plants were analyzed for morphological characteristics (Table 3). The well mature leaves from two-month-old diploid and tetraploid hardened plantlets were used for observation of leaf variations. In leaf characteristics, the size, shape, and margin of leaves were measured and compared between hardened diploid and tetraploid plants. The values from 21 plants were used to evaluate each morphological parameter.
Field Emission-Scanning electron microscopy (FE-SEM) analysis for stomata
For field emission scanning electron microscopy analysis, leaf samples of colchicine induced tetraploid and diploid plants were cut into 1.0 cm2 pieces and fixed in 1.25% glutaraldehyde (Sigma Aldrich, USA) in phosphate buffer saline (PBS) at room temperature for 12 h. The fixed samples were washed with PBS and followed by dehydration in increasing graded series (10, 25, 50, 75, and 100%) of ethyl alcohol 30 min into each grade (Nikam et al. 2019). The leaf sample pieces were further dried and mounted on aluminum stub with auto-stick carbon tape and coated with gold in an auto fine Sputter Coater machine (Quorum Q150T ES). The gold coated final samples of diploid and tetraploids were subjected to FE-SEM analysis (FEI NOVA NANOSEMNPEP303) operating at 5-10 kV, 3.5 spot size, and ETD detector for surface observations digitized with software: xT microscope. The recorded observations or photographic evidences were used for the determination of stomatal size (µm).
Inflorescence, flower, and seed characteristics
The polyploidy induced variations in inflorescence, flower, and seed characters of Niger were described according to modified method of Abdoli et al. (2013). The shape and size of sepals, diameter of capitula, number of discs florets, number ray florets, were measured at fully expanded stage of capitula. Number of seeds per capitula, size of seeds and weight of 100 seeds of tetraploid and control diploid plantlets were recorded (Table 3) at the time of senescence of ray florets.
Measurement of biomass
The in vitro raised control diploid and colchicine induced tetraploid plantlets grown in natural conditions were harvested at the time of initiation of capitulum and fresh weight was recorded. Then the total fresh biomass was dried in an oven at 60 ºC till constant weight obtained. The percent moisture content was determined by using following equation.
Moisture content (%) = Fresh weight – Dry weight / Fresh weight x 100 (Nikam et al. 2019).
Oil extraction and fatty acid composition
The husk of dry seeds was removed and 10 g of seeds without husk were grounded using mortar and pestle. The obtained homogenate was suspended in 20 ml of n-hexane and stirred it overnight using rotary shaker (80 rpm) at 25±2ºC. Then the suspension was subjected to ultrasonication for 30 min, and filtered through Whatman filter paper No.1. The solvent n-hexane was removed by evaporation from the filtrate under reduced pressure using Rota-evaporator system at 45ºC. The obtained oil was weighed and stored in a refrigerator at 4°C till further analysis. Transesterification of oil was carried out according to modified method described by Awolu and Layokum (2013). For this purpose, 300 mg of oil sample was mixed with 6.0 ml 0.5 M NaOH and refluxed for 5 min at 60ºC, followed by addition of 7 ml of KOH and 5 ml of n-hexane. Then in cooled mixture, 15 ml of saturated NaCl solution was added and stirred for 30 seconds. The mixture was placed in static condition for 15 min to separate upper fatty acid methyl ester layer. The upper FAME layer was transferred to GC-MS vial for analysis.
Trans-esterified FAME (100 ul) sample was dissolved in 900 µl MS grade n-Hexane, then filtered through syringe-filter (0.2 µ), and subjected to Gas Chromatography-Mass Spectrometry (Shimadzu TQ 8030) equipped with RTX column and injector AOC-20i S with 150 auto samplers. FAME 37 components mix was used as a standard (Supelco 37 Component FAME Mix, CRM47885, USA). The mass scan range was from 50 to 1080 m/z with Triple Quadrupole mass analyzer. GC-MS system was operated by using computer-based software GCMS Real-Time analysis and post run Real-Time analysis. The helium was used as a carrier gas with 1 ml/min flow rate. The oven temperature of GC was raised successively from 50°C to 250°C at held for 2 min and later for 8 min respectively. The MSD detector was used to obtain mass spectrum of compounds with mass scan range 45–450 amu. The total run time was 30 minutes. Identification of fatty acids was done based on the ionized fragments, and molecular mass used to compare the mass spectrum of detected fatty acids with mass spectrum of NIST library (Keskes et al. 2017).
Experimental design and statistical analysis
All the experiments were arranged in completely randomized design (CRD). Experiments were conducted at least three times with 21 replicates per treatment. The data presented in percentage were normalized by arcsine transformation before performing statistical analysis (Zar 1996, Barmukh and Nikam 2008). Data was analyzed by analysis of variance (ANOVA) to detect significant differences between means. Means differing significantly were compared using Duncan’s (1995) Multiple Range Test (DMRT) at the P < 0.05 level of significance. Variability in data has been expressed as mean ± standard error and significant differences between mean values were indicated by using different alphabets.