As the Arctic Ocean transitions into a seasonally ice-covered ocean, the processes that govern the sea ice melt cycle will undergo a fundamental shift. The summer melt cycle passes through several stages, such as snowmelt, meltpond formation and drainage, and basal melting; normally with surface melt processes occurring well before basal melt. Monitoring of atmospheric, sea ice and oceanographic properties from autonomous buoys deployed across the Beaufort Sea, combined with targeted satellite imagery, reveal a fundamental restructuring of these melt processes within the seasonal ice zone – where basal melt occurs before surface melt. We find this seemingly unremarkable change accelerates the basal melting of sea ice by ten-fold, as well as transforming the timing and flux of freshwater and heat into the upper-ocean. These processes play a pivotal role in determining upper-ocean stratification, and when combined with a modification of the under-ice light field, it could impact marine ecosystem function.