Cell lines and cell culture. miPS cell (iPS-MEF-Ng-20D-17; Lot No. 012) were provided by the RIKEN Cell Bank, Japan. All cells were incubated in a humidified atmosphere containing 5% CO2 at 37°C. miPS-CSCs (miPS-LLCcm, miPS-T47Dcm and miPS-PK8cm) models were maintained in miPS cells media (15% FBS-Gibco, Ireland, 2 mM L-Glutamine, 0.1 mM 2-mercaptoethanol, 0.1 mM NEAA, 50 U/ml penicillin and 50 U/ml streptomycin, without LIF) on gelatin-coated dishes (0.1% gelatin solution at 37°C for 30 min ). The miPS cells under the control of the Nanog promoter expressed GFP were maintained in miPS cells media with LIF on feeder layers.
Cell proliferation and viability assays. miPS-CSCs were seeded with a density of 1 × 104 cells/well on 96-well plates coated with gelatin. The concentrations of Gefitinib (Selleck, ZD1839) and Eganelisib (Selleck, S8330) were formulated according to the manufacturer’s instructions. After 24 h, test compounds were added at a concentration gradient of 3.125 µmol/L, 6.25 µmol/L, 12.5 µmol/L, 25 µmol/L and 50 µmol/L. Cell viabilities at 48 h were determined as follows. After incubation, 3-(4,5-di-methylthiazol-2-yl)-2,5-diphenyltetrazolium bromide, yellow tetrazole (MTT, Sigma-Aldrich) were added to the wells with the final concentration of 0.6 mg/mL and the plate was incubated for 4 h. Formed formazan crystals were dissolved in 10% (w/v) SDS with 0.02 N HCl and incubated overnight. Finally, the absorbance of each well was measured at 570 nm using an MTP-800AFC microplate reader (Corona, Japan). Viable cells were evaluated by MTT assay as described above. The half-maximal inhibitory concentration (IC50) values were determined based on the survival curve obtained by MTT assay. The experiment was independently repeated three times.
Cell Apoptosis assay. In vitro cell apoptosis was analyzed by flow cytometry (AccuriTM C6 Plus flow cytometer, BD Biosciences) using a Annexin V-Phycoerythrin (PE) and 7-amino-actinomycin (7-AAD) Apoptosis Detection Kit (BD Biosciences, 559763) after three kinds of miPS-CSCs cells treated with inhibitors for 48 h, we analyzed proportions of apoptotic cells using FlowJo Software (Treestar Inc., San Carlos, CA), whereas in vivo apoptotic tumor cells were detected using a Colorimetric TUNEL Apoptosis Assay Kit (Beyotime, C1091).
Western blot analysis. The cells were collected and resuspended in cell lysis buffer containing 50 mM Tris (pH 7.4), 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1 mM NaF, 1 mM Na3VO4, 1% Triton X-100, 10% glycerol, 0.25% deoxycholate, and 0.1% SDS. Lysates were electrophoresed using SDS-PAGE and blotted onto nitrocellulose (NC) membrane. Membranes were blocked with 5% nonfat milk or 5% BSA solution for 2 h. Samples were probed with primary antibodies overnight at 4°C. Secondary antibodies HRP conjugated donkey anti-Rabbit IgG (GE Healthcare NA934V) or goat anti-mouse IgG (H + L) (ZB2305) were diluted at 1:5000. Blots were photographed by the Image Quant LAS 4000 luminescent image analyzer (General Electric, Fairfield, CT). All Western blots were quantified using the Image J program (NIH, USA) 23.
Cell invasion and migration assay. According to the manufacturer's instructions for invasion/migration assays, 4 × 104 cells were suspended in the upper chambers of 24-well Transwell plates with/without pre-coated Matrigel (Corning, New York, NY) respectively. 200 µl serum-free medium were plated into the top chamber. The lower chambers were filled with 600 µl serum-containing (10%) medium in each well. Migrated and invaded cells (after incubation for 24 h and 48 h, respectively) on the bottom side of the chamber membrane were fixed and stained with crystal violet and counted under a microscope.
Soft agar colony formation assay. The miPS-LLCcm, miPS-T47Dcm, miPS-PK8cm cell were cultured in RPMI-1640 with 10% FBS in 6-well plates within a 0.35% agar layer, and 2 × 103 cells were seeded to the middle layer of the soft agar (Lonza, Rockland, USA) 23.The plates were incubated for 14 d, after which the cultures were inspected and photographed. Assays were conducted in triplicate in a single experiment, and then as three independent experiments.
In vivostudy. All animal studies were approved by the Institutional Animal Care and Use Committee at Nankai University. All the study was carried out in compliance with the ARRIVE guidelines.
Female 3 to 4-week-old BALB/c nu/nu athymic mice (Vitalriver Beijing, China). BALB/c nude mice were transplanted subcutaneously with 1 × 106 miPS-LLCcm cells. When the tumor volume reached approximately 100 mm3, 0.1% Tween 80, Gefitinib (200 mg/kg, QOD), Eganelisib (5 mg/kg, QOD), or Gefitinib and Eganelisib (n = 7 mice per group) were administrated and observed for 12 d. The mice were euthanized by isoflurane-euthanasia method (Laboratory Animal Anaesthesia (3rd Ed.) Paul A. Flecknell 2009). 5% of isoflurane was exposed to mice and the exposure was continued until one minute after their breathing stopped. Finally, euthanasia was confirmed by cervical dislocation. The tumor tissues and organs (heart, spleen, lung, liver and kidney) were dissected and weighed. Then the tumors were fixed with formalin and embedded in paraffin. The paraffin blocks were sectioned into 5 µm-thick slices and stained with 0.5% Hematoxylin (Sigma Aldrich) and Eosin Y (Sigma Aldrich).
IHC in xenograft tumors. Tissue sections of xenograft tumor (4 µm thick) were immunostained with anti-Ki-67 (1:500) antibodies overnight at 4°C. The peroxidase conjugated streptavidin complex method was performed, followed by the 3, 3′ diaminobenzidine (DAB) procedure according to the manufacturer’s protocols (Dako, Agilent pathology solutions) 23.
Statistical analysis. All in vitro experiments were repeated at least three times unless stated otherwise. All values are given as mean ± SD of not less than three measurements (unless otherwise stated). Statistical were drawn using Tukey’s multiple comparisons test and performed using SPSS 21. All statistical tests were two-sided, and differences were considered statistically significant at P < 0.05 unless stated otherwise.