Several biotechnological advancements have made possible the characterisation of signalling pathways that are conserved across infection types39,40. Profiling global gene expression and sequence alignment to reference genomes enable isolation of differentially expressed genes pre- and post-infection41,42. Selected genes are assessed against repositories and online databases to probe enrichment of functional biological pathways, and subnetworks are constructed by comparing and connecting identified genes to curated protein-protein interaction databases43. Traditional monolayer cell cultures are also being supplanted by human in vitro 3D models which probe functional multicellular interactions of epithelial and immune cells (dendritic cells, neutrophils)44. Detailed mapping of host anti-infective responses in this way has led to the emergence of key signalling pathways that may be targeted by both existing and future pan-pathogen antimicrobials, such as STING and MAPK.
The first line of host defence against infectious agents involves activation of innate immune signalling pathways that recognise specific pathogen-associated molecular patterns (PAMPs)45,46. For example, RIG-I-like receptors (RLRs) have evolved to detect viral RNA species and to activate the production of host defence molecules and cytokines that stimulate adaptive immune responses; their regulation by host-derived ncRNAs is of particular interest47. In addition, host defence countermeasures, including the production of type I interferons (IFNs), can also be triggered by microbial DNA from bacteria, viruses and perhaps parasites and are regulated by the cytosolic sensor, stimulator of interferon genes (STING)48,49. The discovery of the STING signalling pathway has provided considerable insight into microbial pathogenesis, mechanisms of host defence, and causes of inflammatory disease and even cancer50. Regulation of the STING pathway has therefore been suggested as a pan-pathogen antimicrobial strategy51. Given the importance of STING as a mediator of both antiviral and pro-inflammatory responses to viral infection, it is interesting to consider last year it was shown to have a crucial role in replication of RV-A and RV-C rhinoviruses52. STING is relatively highly expressed in lung tissue and thus may contribute to protection against both bacterial and viral respiratory tract infection53. Considering azithromycin’s ability to upregulate virus-induced type I interferon responses, its use as an antibiotic for pulmonary bacterial infections, and the fact that it has been described as a ‘holy grail’ to prevent exacerbations in chronic respiratory disease, a molecular mechanism of azithromycin and other macrolides via STING is possible54,55.
The MAP kinases (MAPKs), which include ERK, JNK, and p38 families, constitute an integral part of the host intracellular signalling network, essential for signal transduction from receptors and stimuli to biological reaction56–59. Appropriate functioning of MAPK signalling is thus critical to mount effective immune responses, and presents a broad-spectrum therapeutic target across pathogen classes, which drugs such as macrolides may exploit60,61. Macrolides are a class of diverse compounds which include antibiotics, antifungals, prokinetics, and immunosuppressants. The non-antimicrobial properties of macrolides have been suspected as far back as the 1960s and their successful treating of hyperinflammatory diseases such as diffuse panbronchiolitis (DPB) has served to extend their use to a number of chronic inflammatory diseases62. Macrolides have been shown to modulate intracellular MAPK, especially ERK1/2, and the NF-kB pathway downstream of ERK63. Due to the fact that these pathways exert plethoric cellular functions, including inflammatory cytokine production, cell proliferation, and mucin secretion, modulation of ERK1/2 and NF-kB can explain the majority of the reported immunomodulatory effects of macrolides64,65. Intriguingly, however, specific proteins and receptors targeted by macrolides that affect MAPK/NF-kB signalling have not yet been identified, offering an avenue for experimental verification. Indeed, putative binding molecule(s) may have multiple mechanisms of action. Overall, macrolide treatment of DPB, asthma, bronchiectasis, rhinosinusitis, and CF is made possible by polymodal modulation exerted at different levels of cellular signalling, yet among these, modulation of ERK1/2 and transcription factors is prominent, consistent, and clearly unrelated to antimicrobial properties66.
Due to its broad-spectrum anti-infective effect against bacteria, parasites, and viruses, several studies have sought to delineate the underlying molecular mechanism of nitazoxanide, a thiazolide drug67. Tizoxanide, the main active metabolite of nitazoxanide, exerts anti-inflammatory effects by inhibiting the production of pro-inflammatory cytokines and suppressing activation of the NF-kB and the MAPK signalling pathways in LPS-treated macrophage cells68. Similarly, niclosamide, a potential pan-pathogen antimicrobial, was found to inhibit MAPK/ERK in human glioblastoma studies, indicative of crosstalk between anti-infectives and anti-cancer therapeutics69. Moreover, ivermectin, a potential treatment for COVID-19, reverses drug resistance in cancer cells via the EGFR/ERK/Akt/NF-kB pathway70. During viral infection, signalling pathways that govern essential physiological roles, such as apoptosis, mitogenesis, cell proliferation, metabolism, and cytoskeletal reorganisation, can be usurped to the benefit of the virus. Considering the vital role played by the ERK/MAPK pathway in controlling diverse host physiological processes, it is not surprising that many viruses co-opt the pathway for their own biologic needs71. Development of new antiviral therapeutics based on clinical trials of ERK/MAPK inhibitors has been suggested for both DNA and RNA viruses, including SARS-CoV-2 recently72,73.
Autophagy signalling has also emerged as a host pharmacological target with broad-spectrum anti-infective potential. Recently, the Centers of Excellence for Translational Research (CETR) Program were founded to develop host-directed broad-spectrum anti-infective agents against pathogens with pandemic potential. According to their grant proposal, later funded by the National Institute of Allergy and Infectious Diseases (NIAID), ‘broad-spectrum host-directed therapeutics, once approved for clinical use, can be deployed for emerging pathogens, new outbreaks, and pathogens engineered with ill-intent’74. The goal of this proposal is to generate autophagy pathway-directed compounds that are active against a range of taxonomically-unrelated pathogens. To accomplish this, several strategies are being employed including targeting Beclin 1 complexes, genes and pathways for autophagy-dependent inhibition of bacterial infection, and Atg gene-dependent immunity75,76.
Virulence factors secreted by pathogens have co-evolved to manipulate host signalling pathways via a range of mechanisms, including constitutive pathway activation and subversion of critical signalling molecules. A major challenge is to determine enzymatic activities and host substrates for pathogen virulence factors that show no clear homology to eukaryotic proteins. Following from this, an even more complex challenge is to glean an understanding of the orchestra of factors within the host-pathogen interactome involved in successful infection. Both temporal and spatial considerations are essential for regulating host cells during infection, justifying the employment of model organisms to understand system-level effects of therapeutic intervention within a physiological context. Ultimately, the discovery of conserved anti-infective pathways is a landmark discovery, not only to incite unification of microbiological disciplines first envisioned by Casadevall and Pirofski, but also to mechanistically confirm the therapeutic success of existing antimicrobials which treat diseases pertaining to multiple pathogen classes.