2.1 Production of PAM
PAM was produced with an atmospheric-pressure low-temperature He plasma jet configured with an external single electrode on a 150 mm long glass capillary with an internal diameter of 2.4 mm (Figure 1a) [24-27]. Power was supplied by a high-voltage bipolar square wave pulse of 7 kV (peak-to-peak) at a frequency of 10 kHz. He gas was fed into the glass capillary at a fixed gas flow rate of 2 SLM. PAM was generated by plasma jet treating 3 mL of Dulbecco's Modified Eagle Medium (DMEM) (ThermoFisher SCIENTIFIC) in a 60 mm polystyrene tissue culture dish at a 10 mm distance from the liquid surface for 5, 10 and 15 minutes. Comparative level of ROS generated in the PAM was measured by adding 10 µL of 100 mM luminol (Nacalai tesque) to 3 mL PAM, incubating for 1 minute at ambient temperature and then imaging using an IVIS spectrum 200 system (Xenogen) with 1 minute exposure. Fluorescence intensity of the images was analysed using LivingImage 3.0 software.
2.2 Human bladder cell lines and cell culture conditions
The human bladder carcinoma cell line 253JB-V and human urothelial cancer (UC) cell line T24 were maintained in DMEM supplemented with 10% v/v fetal bovine serum (FBS, Life Technologies Inc) and 200 µg/ml streptomycin. Cells were cultured at 37°C in a humidified atmosphere containing 5% CO2.
2.3 PAM treatment of cells
A density of 5x103 cells/well was seeded into a 96-well and cultured for 24 hours in 100 µL of media. The media was then removed and replaced with 100 µL of PAM. Cells were incubated in PAM and cultured for 3 hours and/or 24 hours before assessment as detailed in the following sections. Control group represents cells not exposed to PAM but otherwise treated identically compared to the PAM treated cells.
2.4 Cell viability assay
A volume of 10 µL of 5 mg/ml 3-(4, 5-dimethyl-thiogol-2-yl)-2, 5-diplenyltetrazollium (MTT, Sigma) was added directly into each well and incubated for 3 hours to allow the mitochondria dehydrogenase to convert MTT into an insoluble formazan product. The media was aspirated, and the sediment dissolved in dimethyl sulfoxide (DMSO, FUJIFILM Wako Pure Chemical Corporation). Absorbance was measured at 570 nm on a SpectraMax 190 microplate reader (Molecular Devices) to determine the cell viability.
2.5 Flow cytometry analysis of cell death, mitochondrial membrane potential and mitochondrial ROS, and cell cycle
Cells were trypsinised by 2.5% trypsin (ThermoFisher SCIENTIFIC) and washed with phosphate buffered saline (PBS, Sigma). Cells were then centrifuged for 5 minutes and stained as detailed in the following protocols. To identify each cell cycle phase a BrdU flow cytometer kit (BD Biosciences) was used according to the manufacture’s protocol. Identification of apoptotic and necrotic cells was achieved by double staining of 5 µL annexin V-APC (BD Pharmingen) and 5 µL propidium iodide (PI, Sigma) dyes for 10 minutes. Cells were twice washed with binding buffer and then measured. Mitochondria membrane potential (ΔΨm) and mitochondrial ROS were analysed by staining with 250 nM tetramethylrhodamine methyl ester (TMRE, Takara Bio) and 5 µM MitoSox (ThermoFisher SCIENTIFIC) for 15 minutes to determine mitochondria membrane potential (ΔΨm) and reactive oxygen species (ROS) in mitochondria, respectively. The stained cells for each method were processed for LSRFortessa or FACScan (BD Biosciences). A minimum 10,000 cells per sample was acquired and subsequently analysed with FlowJo software. The ΔΨm and mitochondrial ROS were measured as fluorescence intensity in the histogram, respectively. Cell death was determined from the total percentage of cells stained positive for annexin V and PI in the flow cytometry graphs. In the flow cytometry graph, the sections in the lower left, lower right and upper right correspond to intact, apoptotic and necrotic cells, respectively.
2.6 Quantification of intracellular cytochrome c and caspase 3
Intracellular concentration of cytochrome c and caspase 3 were measured by first trypsinising cells and lysing with cell lysis buffer 2 (R&D systems). Cytochrome c concentration was measured using a commercially available kit (R&D systems, catalogue no. DCTC0) according to the manufacturer’s protocol. The cell lysates were mixed with cytochrome c conjugate for 2 hours at room temperature. After 2 h, the wells were washed and incubated with substrate solution for 30 minutes. The absorbance of each well was measured at 570 nm using a Molecular Devices Thermomax microplate reader. For determination of the intracellular caspase 3 concentration, the cell lysates were mixed with reaction buffer containing 20 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) buffer at pH 7.5, 0.1 M NaCl and 10 µM of N-Acetyl-Asp-Glu-Val-Asp-7-amido-4-Methylcoumarin as a caspase 3 reporter molecule. Caspase 3 cleaves the reporter molecule resulting in release of 7-amino-4-methylcoumarin (AMC), which was measured using a fluorescence spectrophotometer at 570 nm on a Molecular Devices Thermomax microplate reader.
2.7 Western blot analysis of cell cycle regulatory factors
Following 24 hours after PAM treatment, cells were harvested and lysed with lysis buffer and protease inhibitors. Lysate protein was boiled with sample buffer for 5 minutes and separated by SDS-PAGE on a 15% polyacrylamidegel. Afterwards the proteins were transferred electrophoretically onto polyvinylidenedifluoride membranes. Non-specific binding site were blocked with PBS containing 1% bovine serum albumin (BSA). After blocking, the membranes were probed with appropriate antibodies against cyclin D, cdk4 and p21. All antibodies were purchased from Santa Cruz Biotechnology Inc. Antibody detection was performed using an Enhanced Chemiluminescence Assay (Pierce Biotechnology, Rockford, IL, USA).
2.8 PAM treatment of in vivo subcutaneous bladder cancer tumour and analysis of treatment outcome
Seven-week-old female BALB/c nu/nu mice were housed in plastic cages with stainless steel grid tops in an air-conditioned room with a 12 hour light-dark cycle maintained at room temperature and provided with water and food ad libitum in the institute for animal experiments of Kochi Medical School. Animal experiments were conducted in accordance with the institutional guidelines and regulations and reviewed by the animal experiment and welfare committee of Kochi Medical School. The animal experimental protocol was approved by the Institutional Animal Care and Use Committee of Kochi University Permit Number; J-16, L-6 and M-27. A total 10 mice were used in this study. The study was carried out in compliance with the ARRIVE guidelines.
Each mouse was injected in the dorsal region subcutaneously with 2x106 253JB-V cells suspended in 100 μL of DMEM. Tumour was grown to a diameter of approximately 105 mm3, the tumour-bearing mice were randomly divided into two groups (control and treatment group). Dorsal skin of tumour was inverted and exposed to PAM for 30 minutes. A total of 6 mice and 4 mice were analysed for the PAM treatment group and untreated control group, respectively.
Following 24 hours after treatment, all mice were euthanised by the injection of pentobarbital, and the tumours were removed for pathological analysis. The tumour volume was calculated using the following formula: V = A x B, where A and B are orthogonal diameters of the tumours that were measured using a caliper. Harvested tumours were fixed in 20% formalin at room temperature for 48 hours. Each tumour was processed into paraffin and cut into 10 μm thick sections. The resected tumour sections were stained using the terminal deoxynucleotidyl transferase dUTP nick end labelling (TUNEL) method, anti-Ki-67 antibody and with hematoxylin and eosin (H&E).
The TUNEL assay was used to measure the volume of the degenerated lesion within the tumour mass. The degenerated area was calculated according to the following formula: V = C x D, where C and D are orthogonal diameters of the degenerated lesion measured using a microscope. The TUNEL-positive apoptotic cells were counted through a high-power field lens. More than 1000 tumour cells were counted to calculate the apoptosis index (AI) from these areas. Apoptotic cells were not evaluated from the vicinity of necrotic areas.
2.9 Statistical analysis
Statistical analysis was performed using JMP 8 software (SAS Institute Japan, Tokyo, Japan). Student-t tests were used to compare the data. Statistical significance was defined by a p value of < 0.05.