Chemicals.
Stock solutions of stearic acid and palmitic acid (Sigma, St. Louis, MO, USA) supplemented with BSA (3 mmol/L fatty acids:1.5 mmol/L BSA) were prepared by dissolving them in ethanol and saponifying them with sodium hydroxide, as described previously [19]. After the sodium salt had dried, it was resuspended in saline and then heated at 80 °C until completely dissolved. Next, 20% (w/v) BSA was added and the mixture was stirred at 50 °C for 4 h. The complex was then sterilized and aliquoted.
Cell culture.
The pancreatic β-TC6 cells and AML12 cells were obtained from Shanghai Academy of Chinese Sciences Cell Library and cultured in Dulbecco’s modified Eagle’s medium (DMEM; Gibco/Life Technologies, Carlsbad, CA, USA), supplemented with 15% fetal bovine serum (FBS; Gibco/Life Technologies), 50 µg/mL streptomycin, 50 IU/mL penicillin (Gibco/Life Technologies), and 1.5 g/L NaHCO3. Mouse islets were isolated after collagenase P (Cat. 11213873001; Roche Molecular Biochemicals, Germany) digestion of the pancreas by ductal injection and filtered with hardware cloth (600 µm). Next, islets were purified with different concentrations of Ficoll 400 (Cat. 17-0300-10; Pharmacia). Finally, islets were incubated in RPMI 1640 (Gibco) containing 10% FBS, 0.11 g/L sodium pyruvate, and 100 units/mL penicillin-streptomycin. The β-TC6 cells and islets were incubated with 400 µmol/L stearic or palmitic acid for 24 h. AML 12 cells were also treated with 400 µmol/L stearic acid for 24 h.
RNA sequencing and data analysis.
The lncRNA and mRNA high-throughput sequencing was performed by Genewiz (Suzhou, China), processing nine samples from pancreatic β-TC6 cells (3 control, 3 stearic acid, and 3 palmitic acid samples). Differential expression analysis was performed using the DESeq Bioconductor package in R by first transforming the raw count data to log2 counts per million reads using the “voom” function (P < 0.05).
Construction of gene co-expression network.
The Pearson correlation coefficients (PCC) were performed for lncRNA TCONS_00230836-mRNA pairs, of which the PCC ≥ 0.950, or PCC ≤ -0.950, P < 0.05 were selected to construct the gene co-expression network using Cytoscape software. Each gene corresponds to a node in the network.
Animal experiments.
Twenty male C57BL/6J mice (6 weeks old) were purchased from Beijing Vital River Laboratory Animal Technology Company (Beijing, China). After adaptive feeding for 1 week, these mice were randomly divided into control and high-stearic-acid diet groups (n = 10 per group), according to their body weights. The control diet (1025) and high-stearic-acid diet (HSD) (H10060) were obtained from Beijing HFK Bioscience Co. Ltd. (Beijing, China) (Additional file 1). After 20 weeks of feeding the mice, islets and blood samples were collected for biochemical analysis. Fasting (12 hours) serum glucose, total cholesterol, triacylglycerol, high-density-lipoprotein cholesterol, and low-density-lipoprotein cholesterol levels were calculated using an automatic analyzer (Hitachi-7100; Hitachi, Tokyo, Japan), kits for which were purchased from Biosino Biotechnology Co. (Beijing, China). Serum insulin level was measured using a mouse/rat insulin ELISA kit (Linco Research, St. Charles, MO, USA).
Serum nonesterified fatty acid profile measurement.
Fasting serum nonesterified fatty acids were transformed to fatty acid methyl esters, as described in our previous studies [4, 20]. Gas chromatography–mass spectrometry analysis was performed using a TRACE gas chromatograph with a Polaris Q mass spectrometer (Thermo Finnigan, San Jose, CA, USA). Separation was obtained on a J&W DB-WAX capillary column (30-m, 0.25-mm I.D., 0.25-µm film thickness; Agilent J&W Scientific, Folsom, CA, USA). Heptadecanoic acid (C17:0) was used as an internal standard.
Cell viability measurements.
Cell viability was measured by the assessment of lactate dehydrogenase (LDH) release and CCK 8 assay. For measuring LDH, the culture medium was collected and characterized using LDH assay kit (Thermo Fisher Scientific Inc.). For the CCK 8 assay, we used the Cell Counting Kit 8 (CCK-8, C0038; Beyotime Biotechnology, Shanghai, China). The β-TC6 cells were seeded into each well of a 96-well plate and 100 µL of CCK-8 mixed reagents were added to each well. After 1 h of incubation at 37 °C, absorbance was determined at 450 nm using a microplate reader (SpectraMax M2; Molecular Devices, San Jose, CA, USA).
Apoptosis assay.
The β-TC6 cells were collected and stained with fluorescein isothiocyanate (FITC)-annexin V and propidium iodide (PI), in accordance with the manufacturer’s instructions (Lot#AB116F; Absin, Shanghai, China). The apoptosis rate was analyzed by flow cytometry (LSR Fortessa; BD Biosciences, San Jose, CA, USA).
Fluorescent in situ hybridization (FISH).
The β-TC6 cells were seeded into a 24-well plate with sterile slides overnight. Cells were rinsed using 1 × PBS for 5 min and fixed in 4% formaldehyde at room temperature for 10 min. The β-TC6 cells were washed three times with 1 × PBS for 5 min each. Next, the cells were permeabilized in 1 × PBS containing 0.5% Triton X-100 for 5 min at 4 °C. After washing the cells with 1 × PBS, they were blocked in Blocking Solution and Pre-hybridization (1:99) mixed solution at 37 °C for half an hour. Then, in the dark, discarding the mixed solution, the β-TC6 cells were incubated with a hybridized mixture containing lncRNA Probe Mix or U6/18S at 37 °C overnight. On the second day, the β-TC6 cells were washed at 42 °C with different concentrations of SSC solution, which were also protected from the light. After immersing the β-TC6 cells in 1 × PBS for 5 min, they were stained with DAPI staining solution at room temperature for 10 min and then washed with 1 × PBS. The slides taken from the 24-well plate were observed with a laser confocal microscope. The whole process was protected from light to prevent quenching. The locked nucleic acid-modified oligonucleotide probe targeting lncRNA TCONS_00230836 and the FISH Kit were purchased from Ribobio Co. Ltd. (Guangzhou, China).
Transfection procedures.
Smart Silencer for TCONS_00230836 and its negative control (Ribobio Co. Ltd.) were transfected into β-TC6 cells using C10511-05 riboFect™ CP Transfection Kit (Ribobio Co. Ltd.) for 24 h, in accordance with the manufacturer’s instructions. The sequences of lncRNA Smart Silencer for mouse TCONS_00230836 are displayed in Table 1, including three siRNA and three antisense oligonucleotides.
Table 1
The sequences of lncRNA Smart Silencer for mouse TCONS_00230836
Gene | sequences |
siRNA-1 target sequence | CCTTAATCCCAACCCTCAA |
siRNA-2 target sequence | TAGACATAGCCACATGAAA |
siRNA-3 target sequence | CCCAATAGTTAATGACAGA |
antisense oligonucleotides target sequence-1 | GCTGTCAAAAAGGAATCACA |
antisense oligonucleotides target sequence-2 | GGAAATGCAGTGTAGTAGAA |
antisense oligonucleotides target sequence-3 | ATGGGCCCACCCTCTAAGAT |
Quantitative real-time polymerase chain reaction (qRT-PCR).
Total RNA was extracted from β-TC6 cells and mouse islets using TRIzol reagent (Invitrogen), in accordance with the manufacturer’s protocol. The qRT-PCR was performed with SYBR Green PCR Master Mix (Applied Biosystems, Foster City, CA, USA), with β-actin as an internal control. All primers used in this study were synthesized by Sangon Biotech Co. Ltd. (Shanghai, China), the sequences of which are listed in Table 2.
Table 2
Primer sequences used for qRT-PCR
Gene | | sequences (5' to 3') |
TCONS_00230836 | Forward Reverse | AACCACAGGCTTCGGGATAGTC CAAGCATAACAGGCGGGAAGTC |
ENSMUST00000074898 | Forward | ACCTTAAACGACGAGAAGCAATGG |
| Reverse | AGCCAGACACGTAGCCCACACG |
ENSMUST00000086399 | Forward | TGGTCACCGTTGTGATCCC |
| Reverse | TGAGGTCCTCCTTGCATG |
ENSMUST00000050785 | Forward | CTGTCTGTCTGCCACTCCAT |
| Reverse | GCTGGCCAAATAAGAAGAGG |
ENSMUST00000124100 | Forward | ACAAACCGCAGAGAAACAAA |
| Reverse | CCTCCCTCTGCCCTAGTATG |
ENSMUST00000092822 | Forward | GCAGACCCAGTCGTTGTAC |
| Reverse | AAGCCTGTGGCACAACATC |
ENSMUST00000021620 | Forward | GGCTGAAGACAGTTGTGGAA |
| Reverse | GGGTAAATCTTGCCCTTTCA |
ENSMUST00000073388 | Forward | GAGTCACTTGTCCGCAGCTGTC |
| Reverse | TCGCTGTCAGTTAAGTCCAGG |
ENSMUST00000159720 | Forward | CGCTATTGTCTTCTTGATGGAC |
| Reverse | CTTCAACAGTTTCCCTGAGTTG |
ENSMUST00000131456 | Forward | TGATGAGTAGCGTAAAGTACCC |
| Reverse | ATATGAGGCATCGTCAGGTAAG |
ENSMUST00000185596 | Forward | ATCTCTTTGCCTTCCTCAATCA |
| Reverse | GTTTTGATCAGCTCATTCACGT |
β-actin | Forward Reverse | GGTCAGAAGGACTCCTATGTGG TGTCGTCCCAGTTGGTAACA |
Western blotting.
Cells were gently washed three times in 1 × PBS and then 50 µL of intermediate RIPA Lysis Buffer (Beyotime) was added per 24-well plate. Protein concentrations were detected using bicinchoninic acid (BCA) protein assay kits (Cat. No. P0010; Beyotime). Protein samples (approximately 80 µg) were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes. The primary antibodies used were as follows: Phospho-PERK (3179S, CST, dilution of 1:1000), PERK (3192, CST, dilution of 1:1000), Phospho-eIF2α (9721, CST, dilution of 1:1000), eIF2α (9722, CST, dilution of 1:1000), Caspase-3 (9662, CST, dilution of 1:1000), Parp-1 (9532, CST, dilution of 1:1000), Bcl-2 (4223, CST, dilution of 1:1000), ATF-6 (65880, CST, dilution of 1:1000), IRE1α (3294, CST, dilution of 1:1000), and β-actin (sc-130657, Santa Cruz, dilution of 1:800). The secondary antibody was anti-rabbit (s3738, Promega, dilution of 1:7500) alkaline phosphatase-conjugated antibody. Protein coloration was performed using the Stabilized Substrate for Alkaline Phosphatase (S3841, Promega) and was screened by the FluorChem R system (ProteinSimple, San Jose, CA, USA).
Glucose-stimulated insulin secretion assay.
To assess glucose-stimulated insulin secretion (GSIS), β-TC6 cells were incubated in secretion buffer [NaCl 129, KCl 4.8, MgSO4 1.2, KH2PO4 1.2, CaCl2 2.5, NaHCO3 5.0, and HEPES 10 (all mmol/L) supplemented with 1 mg/mL bovine serum albumin, adjusted to pH 7.4] for an additional 60 min with 2.8 or 20 mmol/L glucose [2]. After collecting the supernatant for insulin measurement, the β-TC6 cells were lysed in intermediate RIPA Lysis Buffer (Beyotime) for later evaluation of the total protein content with BCA protein assay reagent kit (Cat. No. P0010, Beyotime) following the manual. Insulin levels in cell culture medium were measured using a mouse/rat insulin ELISA kit (Linco Research) and standardized by every milligram protein per hour in each well.
Statistics.
All statistical data were analyzed with SPSS software, version 21.0 (SPSS Inc., Chicago, IL, USA), and are reported as mean ± SEM. Two-tailed Student’s t-test was used to analyze differences between two groups, and one-way ANOVA followed by Student–Newman–Keuls test was used to test differences among three or more groups. P-values < 0.05 were considered statistically significant.