Hypoxia-Induced RLIP76 is Required for Hypoxia-Enhanced Glycolysis
We first searched for potential hypoxia response elements (HREs) in the RLIP76 promoter to explore whether RLIP76 acts as a hypoxia-responsive gene that participates in hypoxia-enhanced glycolysis in hypoxic conditions. Two potential HREs in the promoter region of RLIP76 were identified by bioinformatics analysis (Figure S1A), which suggests that RLIP76 is a potential hypoxia-responsive gene. Real-time RT-PCR and Western blotting analysis were utilized to explore the expression levels of RLIP76 in U87, U251, SW1088, and A172 glioma cell lines under normoxic or hypoxic conditions. We found that RLIP76 mRNA and protein expression levels were significantly induced by hypoxia in all glioma cells (Figs. 1A and 1B). In addition, RLIP76 was increased under hypoxic conditions in a dose-dependent manner in U251 cells (Figs. 1C and 1D). All these results strongly suggest that RLIP76 is a hypoxia-responsive gene in glioma cells.
To investigate whether RLIP76 is required for the malignant progression of glioma under hypoxic conditions, we exposed U87 and U251 to normoxia or hypoxia (1% O2) for 24 h. As shown in Figure S1B, glioma cells treated with RLIP76 siRNA had a significant decrease in the RLIP76 protein. RLIP76 knockdown suppressed cell proliferation, promoted apoptosis, and inhibited migration, both in normoxic and in hypoxic conditions (Figures S1C-S1E). Moreover, RLIP76 knockdown critically reversed the effect of hypoxia on cell proliferation, apoptosis, and migration (Figures S1C-S1E). These results indicate that RLIP76 critically regulates hypoxia-induced malignant cell progression of gliomas.
We next performed bioinformatics analysis on RLIP76 coexpressed genes to predict the function of RLIP76 in GBM. We investigated 17,084 genes associated with RLIP76 expression by LinkedOmics analysis and displayed them in a heat map (Spearman correlation analysis, p < 0.05) that showed genes that are positively (8104 genes) and negatively (8980 genes) correlated with RLIP76 expression in 150 samples from the TCGA GBM database (Figures S2A and S2B). GO analysis and KEGG analysis of RLIP76 coexpressed genes were performed to explore the potential function of RLIP76 in GBM. GO analysis showed that the RLIP76 coexpressed genes were mainly involved in biological processes such as metabolic process, response to stimulus and cell communication. (Figure S2C). KEGG analysis showed that RLIP76 coexpressed genes were mainly involved in signaling pathways such as oxidative phosphorylation and ubiquitin-mediated proteolysis, which are significant processes in the progression of hypoxia-enhanced glycolysis (Figure S2D). These findings prompted us to investigate the relationship between RLIP76 and glucose metabolism. To determine whether RLIP76 modulates glucose metabolism, we explored the effects of RLIP76 knockdown on glucose uptake, lactate production and the extracellular acidification rate (ECAR) in glioma cell lines (U87 and U251) with RLIP76 knockdown by RLIP76 siRNA. Hypoxia treatment resulted in a dramatic enhancement in glucose uptake and lactate production (Figs. 1E and 1F). To confirm these results, we determined the glycolytic capacity by measuring the ECAR, which is mainly caused by the excretion of lactic and carbonic acids during glucose metabolism, in hypoxic U251 cells in hypoxic conditions and revealed substantially enhanced glycolytic capacity (Figs. 1G and 1H). Conversely, all these hypoxia-induced effects were significantly rescued by downregulation of RLIP76 (Figs. 1E–1H), indicating that RLIP76 serves as an important regulator of hypoxia-enhanced glycolysis.
RLIP76 Regulates Hypoxia-Enhanced Glycolysis via a HIF-1α-Dependent Mechanism
Given that the downregulation of RLIP76 significantly inhibited hypoxia-induced glucose metabolism (Figs. 1E–1H), we then investigated LDHA enzymatic activity and the expression of key glycolysis enzymes. RLIP76 knockdown led to a significant suppression of the enhancing effect of hypoxia on LDHA enzymatic activity and LDHA and GLUT1 expression (Figs. 2A–2C). Mounting evidence has revealed that increases in LDHA and GLUT1 induced by hypoxia are regulated by HIF-1α. We next investigated whether RLIP76 regulates hypoxia-enhanced glycolysis by modulating HIF-1α transcriptional activity. Considering that HIF-1α functions by binding to the HRE in hypoxic conditions, we explored the effects of RLIP76 on HIF-1α-regulated luciferase expression using an HRE luciferase reporter system. Hypoxia significantly promoted the luciferase expression of the WT HRE reporter but not the Mut HRE reporter, and this effect was significantly inhibited by downregulation of RLIP76 (Fig. 2D). Furthermore, when HIF-1α activity was suppressed by the HIF-1α inhibitor digoxin or when HIF-1α expression was decreased via HIF-1α-siRNA, the downregulation of RLIP76 had no effects on WT reporter activity under hypoxic conditions (Figs. 2E, 2F, S3A, and S3B). This finding suggests that hypoxia-induced transcription is influenced by RLIP76 through HIF-1α. Notably, we also revealed that the expression levels of hypoxia-induced HIF-1α and HIF-1α target genes (LDHA and GLUT1) were strongly attenuated by RLIP76 inhibition (Fig. 2G), which indicates that RLIP76 plays a significant role in hypoxia-induced HIF-1α signaling pathway. Moreover, overexpression of RLIP76 by Lenti-RLIP76 (an RLIP76 overexpression plasmid) reversed the HIF-1α-mediated reduction in hypoxia induced by RLIP76 knockdown (Figure S3C). These results suggest that RLIP76 modulates HIF-1α transcriptional activity by regulating its expression under hypoxic conditions.
To further explore whether RLIP76 regulates hypoxia-induced glycolysis via HIF-1α, RLIP76 knockdown cells were transfected with exogenous HIF-1α. The effect of RLIP76 inhibition on lactate production (Fig. 2H), ECAR (Fig. 2I), glucose uptake (Fig. 2J), and GLUT1 and LDHA expression (Fig. 2K) was abrogated by exogenous HIF-1α transfection. Together, these results indicate that the acceleration of hypoxia-induced glycolysis caused by RLIP76 is mediated through HIF-1α signaling via the promotion of GLUT1 and LDHA expression.
Hypoxia-Induced RLIP76 Increases HIF-1α Stabilization by Attenuating the VHL-HIF-1α Interaction
We then investigated the mechanism by which hypoxia-induced HIF-1α expression is regulated by RLIP76. Real-time RT-PCR analysis revealed that HIF-1α mRNA levels did not change under hypoxic conditions after RLIP76 knockdown (Fig. 3A). However, RLIP76 inhibition resulted in a significant reduction in the HIF-1α half-life under hypoxic conditions (Fig. 3B). This effect of RLIP76 on HIF-1α was correlated with proteasome-dependent degradation, as the proteasome inhibitor MG132 could restore the RLIP76 knockdown-induced reduction of HIF-1α expression under hypoxic conditions (Fig. 3C). In addition, the RLIP76 knockdown-induced HIF-1α reduction could be reversed by VHL knockdown (Fig. 3D), implying that the effect of RLIP76 on HIF-1α expression is dependent on VHL. The binding of hydroxylated HIF-1α at proline 564 (hyp564) is necessary for VHL-mediated HIF-1α ubiquitination and subsequent degradation. Therefore, we examined the effect of RLIP76 on hyp564-HIF-1α expression levels. RLIP76 knockdown significantly decreased hyp564-HIF-1α expression in hypoxic conditions (Fig. 3B). This effect of RLIP76 on hyp564-HIF-1α could be restored by MG132 treatment (Fig. 3E), indicating that RLIP76 knockdown could promote hyp564-HIF-1α degradation. Moreover, we demonstrated that the stimulatory effect of RLIP76 on hyp564-HIF-1α is depended on VHL without directly influencing HIF-1α hydroxylation status, as VHL inhibition recovered RLIP76 knockdown-caused hyp564-HIF-1α decrease under both normoxic and hypoxic conditions (Fig. 3D), while no significant difference was observed on hyp564-HIF-1α expression in VHL-knockdown cells upon downregulation of RLIP76 under hypoxia (Figure S3D). As predicted, RLIP76 inhibition significantly enhanced HIF-1α polyubiquitination under hypoxia (Fig. 3F). Consistent with these findings, the polyubiquitination of hypoxic HIF-1α was significantly increased in RLIP76-siRNA-transfected cells (RLIP76 knockdown cells) and returned to that of the controls upon restoration of RLIP76 by transfecting the Lenti-RLIP76 plasmid (RLIP76-overexpressing cells) (Fig. 3G). We further demonstrated that RLIP76 knockdown promoted HIF-1α-VHL and hyp465-HIF-1α-VHL associations under hypoxic conditions (Figs. 3H and 3I). As illustrated in Fig. 3J, RLIP76 was able to suppress the associations between VHL and HIF-1α. Collectively, these data imply that hypoxia-induced RLIP76 attenuates the interaction of VHL and HIF-1α to inhibit the VHL-mediated degradation of HIF-1α by the ubiquitin–proteolytic pathway.
It has been shown that RLIP76 can function as a regulator of heat shock factor by interfering with its ability to form complexes with its target molecules [13], and we hypothesized that RLIP76 could attenuate the VHL-HIF-1α interaction in a similar manner. As shown in Fig. 4A and 4B, RLIP76 could bind to VHL and HIF-1α according to immunoprecipitation assays. The complexes formed between RLIP76-HIF-1α and RLIP76-VHL were also confirmed by GST pull-down of endogenous RLIP76 (Figs. 4C, and 4D). A subsequent co-IP assay further demonstrated that RLIP76 was not capable of forming a trimeric complex with VHL and HIF-1α (Fig. 4E), implying that there is a competitive interaction among RLIP76, HIF-1α and VHL.
To determine the structural factors for RLIP76-VHL and RLIP76-HIF-1α complex formation, we conducted deletion mapping experiments. The mutant VHL (aa 54–213, aa 54–213), which is known to be able to interact with HIF-1α, was found in a complex with RLIP76, while the other three VHL deletion mutants (aa 72–213, 1–156, and 1–186) without HIF-1α-binding ability showed no interaction with RLIP76 (Figs. 4F and 4G), which implies that RLIP76 and HIF-1α might competitively interact with VHL. In addition, all HIF-1α deletion mutants could interact with RLIP76 (Figs. 4H and 4I), which suggests that RLIP76 could be associated with HIF-1α via multiple domains. All these data suggest that RLIP76 may affect the HIF-1α-VHL complex by directly interacting with each protein.
Significance of the GAP Function of RLIP76 in the Interaction with HIF-1α and VHL
The RLIP76 protein serves as an ATP-binding plasma membrane transporter with two ATP-binding sites at residues 69–74 and 418–425 [16]. RLIP76 ATPase activity has been well documented to be involved in the regulation of multiple pathways, including the ubiquitin–proteolytic pathway. Using RLIP76 ATP-binding mutants (K74M and K425M), we then explored whether the ATPase activity of RLIP76 is necessary for its interactions with HIF-1α and VHL. ATPase RLIP76 mutants appeared to form complexes with HIF-1α or VHL (Figs. 4J-4N), which indicates an ATP-independent role for RLIP76 in its interactions with HIF-1α and VHL.
RLIP76 was first cloned as a Ral-binding GTPase-activating protein (GAP) and negative regulator of heat shock factor-1 (Hsf-1) because of its ability to form the RLIP76-Hsf-1 complex, which is due to the GAP function of RLIP76. We then utilized GAP-deficient R208L and K224R RLIP76 mutants to explore the effect of RLIP76 on HIF-1α or VHL complex formation. In contrast to ATP-deficient mutants, the R208L and K244R RLIP76 mutants failed to integrate with HIF-1α or VHL (Figs. 4J-4N), suggesting the involvement of the GAP function of RLIP76 in binding to HIF-1α and VHL. Overall, the GAP function of RLIP76, but not the ATPase function, is required for formation of the RLIP76-HIF-1α and RLIP76-VHL complexes.
RLIP76 is a Novel Transcriptional Target of HIF-1α
To investigate the molecular mechanism of aberrant RLIP76 expression induced by hypoxia, we inhibited HIF-1α, HIF-2α, and p53, known as classical hypoxia-responsible transcriptional factors, in U251 cells. Downregulation of HIF-1α, but not HIF-2α or p53, strongly alleviated RLIP76 mRNA and protein upregulation induced by hypoxia (Figs. 5A and 5B). In addition, overexpression of HIF-1α greatly increased RLIP76 expression in a dose-dependent manner (Fig. 5C). U251 cells treated with CoCl2 or DMOG (known as HIF-1α inducers) showed a significant increase in RLIP76 mRNA expression (Fig. 5D). These findings indicate that HIF-1α is associated with hypoxia-induced RLIP76 expression. We then explored the effect of HIF-1α on the regulation of RLIP76 expression at the transcriptional level. We found two putative HREs in the promoter of the RLIP76 gene by using PROMO analysis (Figure S1A). Subsequent ChIP assays confirmed the interaction of HIF-1α and HRE-containing genomic DNA fragments (P1 and P2) in RLIP76 under hypoxic conditions (Fig. 5E). By constructing a firefly luciferase reporter plasmid containing wild-type (WT) or mutant (Mut) HREs in the promoter region, we further explored whether the RLIP76 HREs are necessary for HIF-1α-dependent transcriptional activity. As predicted, hypoxia induced dramatically higher luciferase expression in the WT reporter than in the Mut reporter (Figs. 5F and 5G). Moreover, hypoxia-induced luciferase expression was significantly suppressed by HIF-1α inhibition (Figs. 5H and 5I). These results suggest that RLIP76 is a direct transcriptional target of HIF-1α.
Hypoxia-Induced RLIP76 is Critical for the Regulation of Tumorigenesis
To investigate the possible correlation between hypoxia-induced RLIP76 and tumorigenesis in vivo, we established a xenograft glioma model. U251 cells were pretreated with hypoxia to activate the HIF-1α/RLIP76 pathway before injection into the flanks of nude mice. Downregulation of RLIP76 inhibited the tumorigenicity of U251 cells, as demonstrated by the tumor volume results (Figs. 6A and 6B). BrdUrd incorporation revealed that cell proliferation was dramatically suppressed in RLIP76 knockdown tumors compared with control tumors (Fig. 6C). The apoptotic cells in xenograft gliomas were observed by TUNEL staining, and RLIP76 downregulation resulted in a significant increase in RLIP76 knockdown tumors (Fig. 6D). Immunohistochemical (IHC) analysis showed that the expression level of CD31 was significantly decreased in tumors derived from RLIP76 knockdown cells compared with those derived from control transfectants (Fig. 6E). In addition, real-time RT-PCR analysis indicated that the expression levels of HIF-1α, LDHA, and GLUT1 were effectively downregulated, whereas the VHL expression level was dramatically upregulated in RLIP76 knockdown xenografts compared with the control (Fig. 6F). These data strongly indicate that RLIP76 enhances cell proliferation and angiogenesis in vivo and suggest that the hypoxia-induced RLIP76 axis plays a critical role in promoting tumorigenesis. We further investigated RLIP76, HIF-1α, and VHL expression in 96 human GBM samples by IHC staining (Fig. 6G). RLIP76-high GBM exhibited considerably higher immunoreactivity for HIF-1α and lower immunoreactivity for VHL expression (Fig. 6H). Spearman’s correlation analysis revealed that RLIP76 expression was positively associated with HIF-1α by immunostaining (Figure S3E). As we expected, a significant reverse association was also found between VHL and RLIP76 expression (Figure S3F). Together, these data demonstrate that hypoxia-induced RLIP76 plays a key role in cellular mechanisms related to glucose metabolism and glioma progression in vivo.