All procedures were performed in accordance with the ARRIVE guidelines and the U.K. Animals (Scientific Procedures) Act, 1986 and associated guidelines, EU Directive 2010/63/EU for animal experiments, or the National Institutes of Health guide for the care and use of Laboratory animals (NIH Publications No. 8023, revised 1978). The experimental protocol was approved by the Ethics Committee of Institute of Higher Nervous Activity and Neurophysiology, Russian Academy of Sciences (protocol number 10, December 10, 2012). All efforts were made to minimize animals' suffering.
Animals
The study was performed on 146 male 6 months old Wistar rats (BW327-455 g; median 380 g). The animals were purchased in the "Stolbovaya" Breeding Center (Moscow Region) and were housed in acrylic cages with spruce shavings provided as bedding, in the institutional vivarium. The rats were kept at 12 h: 12 h day cycle, with free access to food and water.
The animals were randomly divided into 3 groups: 69 rats received lateral fluid-percussion brain injury; 60 rats were subjected to a scull trepanation without a brain injury (sham operated group); 18 rats formed the intact control group without surgical manipulations.
Experimental Protocol and Surgery
All surgical procedures were performed under inhalational anesthesia with 2-3% isoflurane. Scull trepanation was made in the right parietal bone (3-mm aperture, AP=3 mm, L=3 mm). The head of a Luer-type injection needle was fixed at the margin of the trepanned aperture with cyanoacrylate glue. Lateral fluid percussion brain injury (3.03±0.03 atm) was applied after recovery from anesthesia using a Fluid Percussion Device with the PC-Based Pressure Measurement Unit (Model FP302, USA). After TBI, the animals were returned to their home cages.
For biochemical analysis, the animals were sacrificed by decapitation using a guillotine, on days 1 (sham, n=9; TBI group, n=8), 3 (10 and 7 rats, respectively), 7 (11 and 7, respectively) and 14 (10 and 14, respectively). The brain was removed and briefly cooled in ice-cold saline. The hippocampus was isolated, and its ipsilateral and contralateral parts were divided into ventral and dorsal portions. Decapitation blood was sampled and centrifuged at 1500g and 40C for 15 min to obtain serum. For histological analysis, the rats were sacrificed under isoflurane anesthesia by the arterial perfusion with 4% formaldehyde solution in 0.1M phosphate buffer, pH 7.4, on days 3 (11 shams and 8 rats from TBI group) and 7 (9 and 12 rats, respectively). The control groups for biochemical and histological analysis (n= 9 and 8 rats, respectively) were sacrificed similarly to respective experimental groups, and the biological material sampled accordingly.
Histology and Morphometry
Fifty-µm sections of rat brains were prepared using a vibratome. Sections located 600 µm apart with coordinates between 2.1 and 5.8 mm from the bregma were selected for further analysis. The sections were stained using the Nissl method. Immunohistochemical staining for ionized calcium-binding adaptor molecule 1 (Iba1), a microglial marker, was performed using polyclonal rabbit-anti-Iba1 (Dako, Denmark) diluted 1:500 with secondary antibodies (goat anti-rabbit IgG, Alexa Fluor, USA) diluted 1:1500. Microphotographs of the sections stained by the Nissl method were made using a Keyence BZ-X700 microscope (magnification x20). Microphotographs of immunohistochemically stained sections were made using a ZEISS Apotome microscopy (magnification x20). Further calculations of microglial cells were made using ImageJ program. Microglial cells in Iba-stained sections and neurons in Nissl-stained sections were counted in the field 150х150 µm in the polymorphic layer of the dentate gyrus (DG), CA1 and CA3 areas of the hippocampus. Representative microphotographs used for morphological descriptions and cell counts are presented in Fig. S1 (Nissl staining) and Fig. S2 (Iba1 immunostaining of microglial cells in the hippocampal dentate gyrus).
Tissue Homogenization
The ipsilateral and contralateral dorsal and ventral hippocampal tissue samples were homogenized using a Potter homogenizer in a 10-fold excess of cold buffer for homogenization (0,1% NP-40, the protease inhibitor (Roche), phosphate-buffered saline (PBS) with 10 impacts of the pestle at a rotation speed of 1000 rpm. The homogenate was additionally triturated with a 1 ml pipette, then 50 μl was taken into an Eppendorf test tube with 500 μl of the reagent for RNA isolation Qiazol (Qiagen). This part of the homogenate was used for PCR analysis. The rest of the homogenate was centrifuged (16900 g, 15 min, 4°С). The supernatants were used to determine the levels of proinflammatory cytokines and corticosterone by ELISA. The aliquots were stored at -800C until use.
Enzyme-linked Immunosorbent Assay (ELISA)
To determine serum and hippocampal corticosterone levels kits for enzyme-linked immunosorbent assay (Kit Corticosterone for 96 tests, cat. no. EIA4164; DRG) were used; the kits allow to detect both free and bound corticosterone by a competitive ELISA method.
The levels of proinflammatory cytokines IL-1 β, IL-6, TNFα in the serum and the hippocampus of rats were measured by R&D Systems Quantikine ELISA Kits according to the manufacturer's instructions (cat.№ SRLB00; cat.no. SR6000B; cat.no. SRTA00).
RNA Extraction and Reverse Transcription
RNA was isolated using Qiazol reagent according to the manufacturer’s recommendations. Before cDNA synthesis, 1 μg of RNA was treated with DNase I (DNase I, Thermo Fisher) according to the manufacturer’s recommendations. Then RNA was used to synthesize cDNA using a mix of random decaprimer and oligo(dT)-primer by means of the MMLV RT Kit (Evrogen) in accordance with the manufacturer’s recommendations.
Quantitative Real-Time Polymerase Chain Reaction (PCR)
The gene expression was analyzed using qPCRmix-HS SYBR+LowROX (Evrogen) in accordance with the manufacturer’s recommendations by means of a quantitative PCR system CFX384 (Bio-Rad). Nucleotide sequences of primers used are shown in Table S1.
The relative quantity (RQ) of transcripts was assessed using the 2-ΔΔCt method, taking into account the efficiency of the reaction with respect to the expression of the Hprt2 and Ywhaz genes; the data in the graphs are presented as RQ.
Statistical Analysis
The variable values were not normally distributed and groups had different variances (according to Shapiro-Wilk and Levene tests). The significance of differences between the experimental groups was determined by the Mann-Whitney test in the Python 3.7 SciPy software package. The data on graphs are presented as box plots: bars represent medians, boxplots represent quartiles, whiskers represent Q1-1.5*IQR and Q3+1.5*IQR. For all groups, n≥6.