Balanz V, Martnez-Fernndez I, Ferrndiz C (2014) Sequential action of FRUITFULL as a modulator of the activity of the floral regulators SVP and SOC1. Journal of Experimental Botany 65:1193-1203
Becker A, Saedler H, Theissen G (2003) Distinct MADS-box gene expression patterns in the reproductive cones of the gymnosperm Gnetum gnemon. Development Genes and Evolution 213:567-572
Becker A, Theissen G (2003) The major clades of MADS-box genes and their role in the development and evolution of flowering plants. Molecular Phylogenetics and Evolution 29:464-489
Bemer M, van Mourik H, Muino JM, Ferrandiz C, Kaufmann K, Angenent GC (2017) FRUITFULL controls SAUR10 expression and regulates Arabidopsis growth and architecture. Journal of Experimental Botany 68:3391-3403
Burko Y, Shleizer-Burko S, Yanai O, Shwartz I, Zelnik ID, Jacob-Hirsch J, Kela I, Eshed-Williams L, Ori N (2013) A Role for APETALA1/FRUITFULL Transcription Factors in Tomato Leaf Development. The Plant cell 25:2070-2083
Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, Kubista M, Mueller R, Nolan T, Pfaffl MW, Shipley GL, Vandesompele J, Wittwer CT (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clinical chemistry 55:611-622
Calonje M, Cubas P, Martinez-Zapater JM, Carmona MJ (2004) Floral meristem identity genes are expressed during tendril development in grapevine. Plant physiology 135:1491-1501.
Chen C, Chen H, Zhang Y, Thomas HR, Frank MH, He Y, Xia R (2020) TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data. Molecular Plant 13:1194-1202
Chen Z, Yang X, Su XX, Rao P, Gao K, Lei BQ, An XM (2015) Identification and expression analysis of APETALA1 homologues in poplar. Acta Physiology Plant 37:50
Cheng SS, Chen PY, Su ZZ, Ma L, Hao PB, Zhang JJ, Ma Q, Liu GY, Liu J, Wang HT, Wei HL, Yu SX (2021a) High-resolution temporal dynamic transcriptome landscape reveals aGhCAL-mediated flowering regulatory pathway in cotton (Gossypium hirsutum L.). Plant Biotechnology Journal 19:153-166
Cheng X, Wang H, Wei H, Gu L, Hao P, Sun H, Wu A, Cheng S, Yu S (2021b) The MADS transcription factor GhAP1.7 coordinates the flowering regulatory pathway in upland cotton (Gossypium hirsutum L.). Gene 769:145235
De Folter S, Immink RGH, Kieffer M, Pařenicová L, Henz SR, Weigel D, Busscher M, Kooiker M, Colombo L, Kater MM, Davies B, Angenent GC (2005) Comprehensive Interaction Map of the Arabidopsis MADS Box Transcription Factors. The Plant cell 17:1424-1433
Diaz-Riquelme J, Lijavetzky D, Martinez-Zapater JM, Carmona MJ (2009) Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant physiology 149:354-369
Dong X, Li Y, Guan Y, Wang S, Luo H, Li X, Li H, Zhang Z (2021) Auxin-induced AUXIN RESPONSE FACTOR4 activates APETALA1 and FRUITFULL to promote flowering in woodland strawberry. Horticulture Research 8:115
Ellul P, Angosto T, Garcia-Sogo B, Garcia-Hurtado N, Martin-Trillo M, Salinas M, Moreno V, Lozano R, Martinez-Zapater M (2004) Expression of Arabidopsis APETALA1 in tomato reduces its vegetative cycle without affecting plant production. Molecular Breeding 13:155-163
Führer M, Gaidora A, Venhuizen P, Dobrogojski J, Béziat C, Feraru MI, Kleine-Vehn J, Kalyna M, Barbez E (2020) FRUITFULL Is a Repressor of Apical Hook Opening in Arabidopsis thaliana. International Journal of Molecular Sciences 21:6438
Fernandez DE, Wang CT, Zheng Y, Adamczyk BJ, Singhal R, Hall PK, Perry SE (2014) The MADS-Domain Factors AGAMOUS-LIKE15 and AGAMOUS-LIKE18, along with SHORT VEGETATIVE PHASE and AGAMOUS-LIKE24, Are Necessary to Block Floral Gene Expression during the Vegetative Phase. Plant physiology 165:1591-1603
Ferrándiz C, Gu Q, Martienssen R, Yanofsky MF (2000) Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER. Development 127:725-734
Flagel LE, Wendel JF (2009) Gene duplication and evolutionary novelty in plants. New Phytologist 183:557-564
Gao X, Britt RC, Jr., Shan L, He P (2011) Agrobacterium-mediated virus-induced gene silencing assay in cotton. Journal of visualized experiments 54: e2938.
Gu Q, Ferrandiz C, Yanofsky MF, Martienssen R (1998) The FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development. Development 125:1509-1517
Huang G, Wu ZG, Percy RG, Bai MZ, Li Y, Frelichowski JE, Hu J, Wang K, Yu JZ, Zhu YX (2020) Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution. Nature Genetics 52:516-524
Irish VF, Sussex lM (1990) Function of the apetala-1 Gene during Arabídopsis Floral Development. The Plant cell 2:741-753
Jiang SC, Pang CY, Song MZ, Wei HL, Fan SL, Yu SX (2014) Analysis of MIKCC-Type MADS-Box Gene Family in Gossypium hirsutum. Journal of Integrative Agriculture 13:1239-1249
Kaufmann K, Melzer R, Theissen G (2005) MIKC-type MADS-domain proteins: structural modularity, protein interactions and network evolution in land plants. Gene 347:183-198
Kyozuka J, Harcourt R, Peacock WJ, Dennis ES (1997). Eucalyptus has functional equivalents of the Arabidopsis AP1 gene. Plant molecular biology. 35:573-584.
Li J, Fan SL, Song MZ, Pang CY, Wei HL, Li W, Ma JH, Wei JH, Jing JG, Yu SX (2013) Cloning and characterization of a FLO/LFY ortholog in Gossypium hirsutum L. Plant cell reports 32:1675-1686
Li T, Niki T, Nishijima T, Douzono M, Koshioka M, Hisamatsu T (2009) Roles of CmFL, CmAFL1, and CmSOC1 in the transition from vegetative to reproductive growth in Chrysanthemum morifolium Ramat. Journal of Horticultural Science and Biotechnology 84:447-453
Lin EP, Peng HZ, Jin QY, Deng MJ, Li T, Xiao XC, Hua XQ, Wang KH, Bian HW, Han N, Zhu MY (2009) Identification and characterization of two Bamboo (Phyllostachys praecox) AP1/SQUA-like MADS-box genes during floral transition. Planta 231:109-120
Litt A, Irish VF (2003) Duplication and Diversification in the APETALA1/FRUITFULL Floral Homeotic Gene Lineage: Implications for the Evolution of Floral Development. Genetics 165:821–833
Mandel MA, Gustafson-Brown C, Savidge B, Yanofsky MF (1992) Molecular characterization of the Arabidopsis floral homeotic gene APETALA1. Nature 360:273-277
Mandel MA, Yanofsky MF (1995) The Arabidopsis Agl8 Mads Box Gene Is Expressed in Inflorescence Meristems and Is Negatively Regulated by Apetala1. The Plant cell 7:1763-1771
McCarthy EW, Mohamed A, Litt A (2015) Functional Divergence of APETALA1 and FRUITFULL is due to Changes in both Regulation and Coding Sequence. Frontiers in plant science 6:1076
Mellway RD, Lund ST (2013) Interaction analysis of grapevine MIKC(c)-type MADS transcription factors and heterologous expression of putative veraison regulators in tomato. Journal of plant physiology 170:1424-1433
Meng Y, Liu F, Pang C, Fan S, Song M, Wang D, Li W, Yu S (2011) Label-free quantitative proteomics analysis of cotton leaf response to nitric oxide. Journal of proteome research 10:5416-5432
Nardeli SM, Artico S, Aoyagi GM, de Moura SM, Silva TD, Grossi-de-Sa MF, Romanel E, Alves-Ferreira M (2018) Genome-wide analysis of the MADS-box gene family in polyploid cotton (Gossypium hirsutum) and in its diploid parental species (Gossypium arboreum and Gossypium raimondii). Plant Physiology Biochemistry 127:169-184
Nishikawa F, Endo T, Shimada T, Fujii H, Shimizu T, Omura M (2009) Differences in seasonal expression of flowering genes between deciduous trifoliate orange and evergreen Satsuma mandarin. Tree Physiology 29:921-926
Pabon-Mora N, Ambrose BA, Litt A (2012) Poppy APETALA1/FRUITFULL Orthologs Control Flowering Time, Branching, Perianth Identity, and Fruit Development. Plant physiology 158:1685-1704
Pabon-Mora N, Sharma B, Holappa LD, Kramer EM, Litt A (2013) The Aquilegia FRUITFULL-like genes play key roles in leaf morphogenesis and inflorescence development. Plant Journal 74:197-212
Pelaz S, Gustafson-Brown C, Kohalmi SE, Crosby WL, Yanofsky MF (2001) APETALA1 and SEPALLATA3 interact to promote flower development. Plant Journal 26:385-394
Preston JC, Kellogg EA (2006) Reconstructing the evolutionary history of paralogous APETALA1/FRUITFULL-like genes in grasses (Poaceae). Genetics 174:421-437
Ruokolainen S, Ng YP, Broholm SK, Albert VA, Elomaa P, Teeri TH (2010) Characterization of SQUAMOSA-like genes in Gerbera hybrida, including one involved in reproductive transition. BMC plant biology 10:128
Schmittgen TD, Livak KJ (2008) Analyzing real-time PCR data by the comparative C(T) method. Nature Protocols 3:1101-1108
Shan H, Zhang N, Liu C, Xu G, Zhang J, Chen Z, Kong H (2007) Patterns of gene duplication and functional diversification during the evolution of the AP1/SQUA subfamily of plant MADS-box genes. Molecular Phylogenetics and Evolution 44:26-41
Shulga OA, Mitiouchkina TY, Shchennikova AV, Skryabin KG, Dolgov SV (2011) Overexpression of AP1-like genes from Asteraceae induces early-flowering in transgenic Chrysanthemum plants. In Vitro Cellular and Developmental Biology Plant 47:553-560
Sun W, Huang W, Li Z, Song C, Liu D, Liu Y, Hayward A, Liu Y, Huang H, Wang Y (2014) Functional and evolutionary analysis of the AP1/SEP/AGL6 superclade of MADS-box genes in the basal eudicot Epimedium sagittatum. Annals of Botany 113:653-668
Theissen G, Kim JT, Saedler H (1996) Classification and phylogeny of the MADS-box multigene family suggest defined roles of MADS-box gene subfamilies in the morphological evolution of eukaryotes. Journal of molecular evolution. 43:484-516
Urbanus SL, de Folter S, Shchennikova AV, Kaufmann K, Immink RGH, Angenent GC (2009) In planta localisation patterns of MADS domain proteins during floral development in Arabidopsis thaliana. BMC plant biology 9:5
Vandenbussche M, Theissen G, Van de Peer Y, Gerats T (2003) Structural diversification and neo-functionalization during floral MADS-box gene evolution by C-terminal frameshift mutations. Nucleic Acids Res. 31:4401-4409
Van Dijk AD, Morabito G, Fiers M, van Ham RC, Angenent GC, Immink RG (2010) Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction. Plos Computional Biology 6:e1001017
Vision TJ, Brown DG, Tanksley SD (2000) The origins of genomic duplications in Arabidopsis. Science 290:2114-2117
Walter M, Chaban C, Schutze K, Batistic O, Weckermann K, Nake C, Blazevic D, Grefen C, Schumacher K, Oecking C, Harter K, Kudla J (2004) Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation. Plant Journal 40:428-438
Wang SF, Lu G, Hou Z, Luo ZD, Wang TT, Li HX, Zhang JH, Ye ZB (2014a) Members of the tomato FRUITFULL MADS-box family regulate style abscission and fruit ripening. Journal of Experimental Botany 65:3005-3014
Wang X, Fan S, Song M, Pang C, Wei H, Yu J, Ma Q, Yu S (2014b) Upland cotton gene GhFPF1 confers promotion of flowering time and shade-avoidance responses in Arabidopsis thaliana. PloS one 9:e91869
Wang Z, Yang Z, Li F (2019) Updates on molecular mechanisms in the development of branched trichome in Arabidopsis and nonbranched in cotton. Plant biotechnology journal 17:1706-1722
Yalovsky S, Rodriguez-Concepcion M, Bracha K, Toledo-Ortiz G, Gruissem W (2000) Prenylation of the floral transcription factor APETALA1 modulates its function. Plant Cell 12:1257-1266
Yang G, Liu Z, Gao L, Yu K, Feng M, Yao Y, Peng H, Hu Z, Sun Q, Ni Z, Xin M (2018) Genomic Imprinting Was Evolutionarily Conserved during Wheat Polyploidization. Plant Cell 30:37-47
Yang YZ, Jack T (2004) Defining subdomains of the K domain important for protein-protein interactions of plant MADS proteins. Plant Molecular Biology 55:45-59
Yang Z, Qanmber G, Wang Z, Yang Z, Li F (2020) Gossypium Genomics: Trends, Scope, and Utilization for Cotton Improvement. Trends in Plant Science 25:488-500
Zahn LM, Kong H, Leebens-Mack JH, Kim S, Soltis PS, Landherr LL, Soltis DE, dePamphilis CW, Ma H (2005) The Evolution of the SEPALLATA Subfamily of MADS-Box Genes. Genetics 169:2209-2223
Yin XM, Liu X, Xu BX, Lu PY, Dong T, Yang D, Ye TT, Feng YQ, Wu Y (2019) OsMADS18, a membrane-bound MADS-box transcription factor, modulates plant architecture and the abscisic acid response in rice. Journal of Experimental Botany 70:3895-3909
Zhan, J., Chu, Y., Wang, Y., Diao, Y., Zhao, Y., Liu, L., Wei, X., Meng, Y., Li, F. and Ge, X. (2021) The miR164-GhCUC2-GhBRC1 module
regulates plant architecture through abscisic acid in cotton. Plant Biotechnol J., https://doi.org/ 10.1111/pbi.13599
Zhan, J., Chu, Y., Wang, Y., Diao, Y., Zhao, Y., Liu, L., Wei, X., Meng, Y., Li, F. and Ge, X. (2021) The miR164-GhCUC2-GhBRC1 module
regulates plant architecture through abscisic acid in cotton. Plant Biotechnol J., https://doi.org/ 10.1111/pbi.13599
Zhan J, Chu Y, Wang Y, Diao Y, Zhao Y, Liu L, Wei X, Meng Y, Li F, Ge X (2021) The miR164-GhCUC2-GhBRC1 module regulates plant architecture through abscisic acid in cotton. Plant Biotechnology Journal https://doi.org/10.1111/pbi.13599
Zhang S, Lu S, Yi S, Han H, Zhou Q, Cai F, Bao M, Liu G (2019) Identification and characterization of FRUITFULL-like genes from Platanus acerifolia, a basal eudicot tree. Plant Science 280:206-218
Zhang TZ, Hu Y, Jiang WK, Fang L, Guan XY, Chen JD, Zhang JB, Saski CA, Scheffler BE, Stelly DM, Hulse-Kemp AM, Wan Q, Liu BL, Liu CX, Wang S, Pan MQ, Wang YK, Wang DW, Ye WX, Chang LJ, Zhang WP, Song Q, Kirkbride RC, Chen XY, Dennis E, Llewellyn DJ, Peterson DG, Thaxton P, Jones DC, Wang Q, Xu XY, Zhang H, Wu HT, Zhou L, Mei GF, Chen SQ, Tian Y, Xiang D, Li XH, Ding J, Zuo QY, Tao LN, Liu YC, Li J, Lin Y, Hui YY, Cao ZS, Cai CP, Zhu XF, Jiang Z, Zhou BL, Guo WZ, Li RQ, Chen ZJ (2015) Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. Nature Biotechnology 33:531-537
Zhang W, Fan S, Pang C, Wei H, Ma J, Song M, Yu S (2013) Molecular cloning and function analysis of two SQUAMOSA-Like MADS-box genes from Gossypium hirsutum L. Journal of Integrative Plant Biology 55:597-607
Zhang X, wei J, Fan S, Song M, Pang C, Wei H, Wang C, Yu S (2016) Functional characterization of GhSOC1 and GhMADS42 homologs from upland cotton (Gossypium hirsutum L.). Plant Science 242:178-186
Zheng T, Li S, Zang L, Dai L, Yang C, Qu GZ (2014) Overexpression of two PsnAP1 genes from Populus simonii x P. nigra causes early flowering in transgenic tobacco and Arabidopsis. PloS one 9:e111725
Zhou Y, Li BY, Li M, Li XJ, Zhang ZT, Li Y, Li XB (2014) A MADS-box gene is specifically expressed in fibers of cotton (Gossypium hirsutum) and influences plant growth of transgenic Arabidopsis in a GA-dependent manner. Plant Physiology Biochemistry 75:70-79