3.1 Bioinformatics analysis for the effects of propofol on the gene expression profiles according to GSE106799 dataset
Using data from GSE106799 dataset, we performed Gene cluster GO analysis revealed the biological functions of neurons influenced by propofol. The up-regulated genes after propofol treatment are primarily associated to biological functions, such as cell signal, cell proliferation, response to hypoxia and so on (Figure 1A). The down-regulated genes after propofol treatment are related to biological functions, such as feeding behavior, long-term memory, negative regulation of transcriptionand so on (Figure 1B). We found that Arc gene located in the following pathways: 0007626~locomotory behavior;0007275~multicellular organism development; 0007616~long-term memory, and Arc was downregulated after propofol treatment. DNMT3A and DNMT3B located in the pathway: 0000122~negative regulation of transcription from RNA polymerase II promoter.Treatment with propofol decreased expression of Arc, DNMT3A and DNMT3B (Figure 1C, D & E).
3.2 DEX protects hippocampal neurons from propofol-induced injury in mice with the modulation of miR-377-5p/Arc pathway.
TUNEL staining was performed to identify apoptotic neurons in the mouse hippocampus (Figure 2A). Compared with control group, more TUNEL-stained neurons were observed in the propofol group than those in control group (2.18% ± 0.88% vs 12.45% ± 2.45%, P = 0.0002); TUNEL-stained neurons in the propofol+DEX group were decreased significantly compared with propofol group (12.45% ± 2.45% vs 4.78% ± 0.65%, P = 0.0009). Immunohistochemistry was performed to evaluate Arc expression in the mouse hippocampus after drug treatment (Figure 2B). Arc positive expression was significantly reduced after propofol treatment compared to the control group (15.95% ± 2.40% vs 5.70% ± 0.80%, P = 0.002). Compared with control group, Arc positive expression was elevated following DEX treatment (15.95% ± 2.40% vs 37.08% ± 4.17%, P = 0.00012). Moreover, DEX reinstated Arc expression that was down-regulated by propofol (14.38% ± 2.06% vs 37.08% ± 4.17%, P = 6.5 × 10-5).As indicated by RT-PCR,MiR-377-5p expression level was significantly increased after propofol treatment compared to the control group (2.26 ± 0.41 vs 1.18 ± 0.07, P = 0.043, Figure 2C). In contrast, MiR-377-5p expression level was significantly decreased after DEX treatment compared to the control group (0.61 ± 0.04 vs 1.18 ± 0.07, P = 0.0002). Compared to the control group, MiR-377-5p expression levels in the propofol+DEX group were significantly decreased compared to propofol group (1.27 ± 0.28 vs 2.26 ± 0.41, P = 0.027). Western blot analysis showed that propofol significantly decreased DNMT3A, DNMT3B, and Arc proteins in the mouse hippocampus (Figure 2D). After DEX treatment, the protein levels of DNMT3A, DNMT3B, and Arc were all significantly increased compared to the control group. There is no difference in DNMT3A, DNMT3B, and Arc protein levels between propofol+DEX and control groups..
3.3 DEX protects against propofol-induced HT22 cells apoptosis with the modulation of miR-377-5p/Arc pathway.
Using Hoechst 33258 staining, we found cell nucleus shrinkage and chromatin condensation, which are typical apoptotic morphological features, after propofol treatment (Figure 3A). After exposure to propofol, the percent of apoptotic HT22 cells was significantly increased compared with the control group (11.67% ± 1.53% vs 30.33% ± 5.51%, P = 0.005,Figure 3B). Whereas compared with the propofol group, the propofol+DEX group showed a significantly decrease in the percent of apoptotic HT22 cells (30.33% ± 5.51% vs 16.00% ± 3.00%, P = 0.017). There was no significantly difference among the control group, propofol+DEX group, and DEX group in the percent of apoptotic HT22 cells. HT22 cells were exposed to propofol, propofol+DEX, and DEX, followed by analysis of cell viability at 0, 6, 12, 24, 48 h using the CCK-8 assay kit (Figure 3C). After exposure to propofol, HT22 cell viability was significantly inhibited compared to the control group, whereas the introduction of DEX abolished the propofol-induced inhibition. There were no significantly differences among the control group, propofol+DEX group, and DEX groups in the HT22 cell viability. RT-PCR was performed to determine miR-377-5p expression levels in the HT22 cells after exposure to propofol and/or DEX for 24 hours (Figure 3D). MiR-377-5p expression levels in the propofol group were significantly increased compared to the control group, while miR-377-5p expression levels in the propofol+DEX group were significantly decreased compared to the propofol group. After exposure to DEX, miR-377-5p expression levels in the HT22 cells were significantly decreased compared to the control group. Western blot analyses were performed to determine the levels of DNMT3A, DNMT3B, and Arc in HT22 cells (Figure 3E). The results showed exposure to propofol caused significantly decreases in the levels of DNMT3A (Figure 3F), DNMT3B (Figure 3G), and Arc (Figure 3H), while the introduction of DEX counteracted these decreases. The levels of DNMT3A, DNMT3B, and Arc in the propofol+DEX group were all significantly increased compared to the propofol group. After exposure to DEX, the levels of DNMT3A, DNMT3B, and Arc were all significantly increased compared to the control group. DNA methylation in the miR-377-5p promoter was analyzed using MeDIP assay (Figure 3I). The methylation levels in the miR-377-5p promoter were significantly decreased after exposure to propofol, compared to the control group. While compared to the propofol group, the methylation levels of the miR-377-5p were significantly increased in the propofol+DEX group. The methylation levels in the miR-377-5p promoter were significantly increased in the DEX group compared to the control group.
3.4 Arc expression was regulated by DNMT3A/ miR-377-5p pathway
As indicated by RT-PCR, miR-377-5p expression levels were significantly increased in the HT22 cells with DNMT3A knockdown while decreased in the DNMT3A-overexpressed HT22 cells (Figure 4A). Western blot analyses showed that Arc levels were significantly decreased and increased in HT22 cells with DNMT3A knockdown and overexpression, respectively (Figure 4B, 4C, and 4D). To investigate the effect of miR-377-5p on Arc expression, we performed the luciferase report assay to determine interaction between miR-377-5p and Arc mRNA 3’UTR. HT22 cells were co-transfected with luciferase reporter constructs containing wild-type (WT) or mutant-type (MT) Arc 3’UTR and miR-377-5p mimics, and relative luciferase activity was measured and normalized to the negative control (NC) cells (Figure 4E). After transfection of miR-377-5p mimics, the reporter activity of WT Arc construct declined to 47%, while the luciferase activity MT Arc construct was not affected. RT-PCR assay was performed to determine the expression levels of miR-377-5p and Arc after transfection of miR-377-5p mimics and inhibitors. miR-377-5p mimics caused a significant increase in miR-377-5p expression levels (Figure 4F) and decrease in Arc expression levels compared to the control group (Figure 4G); After transfection with miR-377-5p inhibitor, miR-377-5p expression level was significantly decreased while Arc expression level was significantly increased. Western blot analysis (Figure 4H) showed that Arc levels were decreased and increased after transfection with miR-377-5p mimics and inhibitors (Figure 4I).
3.5 DEX attenuated propofol-induced HT22 cell apoptosis by targeting Arc.
In order to verify that the protective effect of DEX against propofol was associated with Arc, we performed Arc knockdown alone or in combination with DEX and propofol treatments. Hochest 33258 staining assays were performed to detect the HT22 cell apoptosis after indicated treatments (Figure 5A). DEX suppressed the apoptosis of HT22 cells induced by propofol, however the anti-apoptotic effect of DEX is diminished after Arc knockdown. Silencing Arc independently elevated the percentage of apoptotic cells as well (Figure 5B). CCK-8 assay was performed to analyze HT22 cell viability (Figure 5C). DEX improved HT22 cell viability that was suppressed by propofol. However, this effect of DEX was also abolished with Arc knockdown. Without DEX and propofol treatment, depletion of Arc also decreased HT22 cell viability. RT-PCR analysis showed that propofol decreased DNMT3A but increased miR-377-5p, however these effects of propofol were reversed by DEX independent of Arc knockdown or not (Figure 5D and E). Depletion of Arc diminished the effect of DEX decreasing propofol-induced up-regulation of caspase-3 (Figure 5F). As indicated by western blot assay, propofol decreased DNMT3A and Arc expression, however these effects of propofol were reversed by DEX (Figure 6A, B and C). DNMT3A protein level is not affected by Arc knockdown. Propofol induced reduction of pro-caspase-3 but the increase of cleaved caspase-3 (Figure 6 D and E). DEX reversed these actions of propofol, but this effect of DEX was not observed with Arc knockdown.