3.1 Isolation and recovery of the actinobacteria from Polar Frontal waters
Isolation showed a higher psychrophilic actinobacterial population density (0.3×102 CFU mL− 1) in the PF1 sample followed by lower psychrophilic actinobacterial population density (0.2×102 CFU mL− 1) in the PF2 sample in the AV agar medium. Whereas, the psychrotolerant actinobacterial forms were found to be same (0.6×102 CFU mL− 1) at the PF1 and PF2 samples in the AV agar medium. The other media were unable to capture actinobacteria when the AV medium was able to report higher population density (Fig. 1A). In the AV medium, the microbial population density was increased because trace vitamins and nutrients were supplied through minimal media. In addition, the AV medium consisted of essential vitamins and glycerol that could have had a significant impact on actinobacterial growth. In addition, media-containing starch (SCNA and AMM) was also found to support actinobacterial growth. The other AIA media consisted of a source of nitrogen (sodium caseinate or asparagine) that might have stimulated the growth of actinobacteria. Pearce et al. [25] research have suggested that the supplementation of nutrients in the isolation media would help to increase the bacterial population. ISP2 showed no growth among the five isolation media used, yet it was reported to improve actinobacteria growth in other aquatic and terrestrial counterparts [26].
3.2 Identification of actinobacterial strains
Actinobacterial strains have been identified by conventional and molecular methods. Morphological analysis showed that the cold loving strains had white, olive green and white yellow aerial mycelia. The cold tolerant strains produced white and gray aerial mycelia. Micromorphological observations showed spiral, rectiflexible, long and branched, spiral and rectiflexible spore chains in the actinobacterial strains. Chemo-taxonomical analysis of actinobacterial strains has shown that meso-DAP is found to be present in the PSY13, PSY15 and PSY21 strains of the nine actinobacterial strains. However, their cell walls did not have any detectable sugars. The cell walls of these strains were therefore known as a type III cell wall. In addition, the strains' spore chains are elongated, segmented and long. In summarizing these results, the strains were found to be the closest to the Nocardiopsis genus and thus confirmed as Nocardiopsis candidate species. LL-DAP and glycine are found in the cell walls of the remaining six strains. Nevertheless, their cell walls had no signature sugars, so they were listed as a type I cell wall. The six strains were shown to be Streptomyces ' closest neighbor with all these findings and were assumed to belong to the Streptomyces genus. Additionally, the strain colonies were mostly powdery and elongated, and the strains displayed the typical morphological characteristics of the actinobacteria. Therefore, the actinobacteria's main characteristics are focused on their spore morphology and the form of spore chain which varies from species to species. Apart from these characteristics, the use of the carbon source is also considered to be a key distinguishing feature of the actinobacteria genus. The PSY and PST 16S genes have been sequenced and deposited in the NCBI GenBank repository (Accession Nos: KY120275, KY120276, KY120277, KY120278, KY120279, KY120280, KY120281, KY120282, KY120283, KY120279). The phylogenetic association of the nine strains is shown in Table 1. All nine strains are phylogenetically classified into actinobacteria and phylogenetic neighbors of PSY13, PSY15, PSY21, PSY25, PST1, PST2, PST3, PST4 and PST5 were found to be Nocardiopsis dassonvillei, N. prasina, N. alba, S. albus, S. albidoflavus, S. exfoliates, S. pactum, S. griseorubens and S. althioticus, respectively (Fig. 2) (Supplementary file 1).
Table 1
Phylogenetic placements of the psychrophilic and psychrotolerant actinobacteria of the Polar Frontal waters of the Antarctica.
Strain No. | Accession No. | Sequence Length (bp) | Closest Phylogenetic Neighbor | Accession No. | Identity (%) |
Psychrophilic actinobacteria |
PSY13 | KY120275 | 1466 | Nocardiopsis dassonvillei | NR 029314 | 99.7 |
PSY15 | KY120276 | 1443 | Nocardiopsis prasina | NR 044906 | 99.6 |
PSY21 | KY120277 | 1437 | Nocardiopsis alba | NR 026340 | 98.6 |
PSY25 | KY120278 | 1483 | Streptomyces albus | NR 112341 | 99.9 |
Psychrotolerant actinobacteria |
PST1 | KY120279 | 1376 | Streptomyces albidoflavus | NR 116634 | 100 |
PST2 | KY120280 | 1451 | Streptomyces exfoliatus | NR 041229 | 99.9 |
PST3 | KY120281 | 1470 | Streptomyces pactum | NR 041134 | 99.9 |
PST4 | KY120282 | 1466 | Streptomyces griseorubens | NR 041066 | 99.9 |
PST5 | KY120283 | 1450 | Streptomyces althioticus | NR 115392 | 99.9 |
PST1 | KY120279 | 1376 | Streptomyces albidoflavus | NR 116634 | 100 |
Molecular analysis confirmed that actinobacterial strains have stronger correlations with Streptomyces and Nocardiopsis sp. Previous reports suggested that Streptomyces was disproportionately present in the waters of the Southern Ocean waters. Streptomyces was also found to be dominant in the Southern Ocean waters, as in the other environmental counterparts [27]. Studies of Lavin et al. [28] have also reported the presence of Streptomyces in the Fildes Peninsula soils of King George Island, Antarctica. Streptomyces are normally present in the oceanic habitats [29] and are found to be the important member among the actinobacteria, which are prevalent in the cryo environment with 80% recoverability [30]. Streptomyces fildesensis sp. nov. and Streptomyces hypolithicus sp. nov. have been recovered successfully from Antarctica and have been described as new species [31, 32].
Streptomyces are shown to have higher bioactivity as they dominate the environment despite increasing salinity and lowering temperatures under extreme conditions [33]. The present study recorded around 67% of the contribution of Streptomyces to help discover novel candidate organisms from intense marine habitats for their bioactive ability. Nocardiopsis has also been documented in this study in addition to Streptomyces, which are of immense interest for their bioactive potential and ecological functions. It is noticed that the genus Nocardiopsis is omnipresent, irrespective of the climate. N. dassonvillei, N. prasina and N. alba have been reported in the present study. N. dassonvillei was previously known as N. antarctica and was later reclassified as N. dassonvillei with the aid of advanced molecular techniques.
3.3 Effect of temperature on the growth of psychrophilic and psychrotolerant actinobacteria
The strains PSY13, PSY15, PSY21 and PSY25 were observed to grow well at an optimum temperature of 10°C and are therefore classified as psychrophiles (Fig. 1B). The strains PST1, PST2, PST3, PST4 and PST5 were observed to grow well at an optimum temperature of 20°C and are therefore classified as psychrotolerants. This temperature reliant classification would significantly help discriminate the organisms and design experiments to explore their bioactive potentials. Cavicchioli, [34] has reported the cardinal temperature of the cold loving organisms (psychrophiles) with 5°C as the minimum and 20°C as the maximum and 10°C as the optimum. However, the cardinal temperatures of the cold tolerant organisms (psychrotolerants) were determined with 10°C as the minimum and 25°C as the maximum and 20°C as the optimum.
3.4 Cellulolytic activity
In the cellulolytic screening test, the psychrophilic strain PSY13 was found to possess a higher cellulolytic activity than the other strains (Fig. 1D). The cellulose hydrolytic zone measured around 10 cm (Fig. 1E) and thus, justifying the cold-active cellulase potential of the psychrophilic actinobacterial strain in less than an hour. The cold-active cellulase production was justified by the supporting data reported by Buchon et al. [35], who have also proposed that temperature was highly influencing the cold adapted microorganisms for the production of cold-active enzymes. As these enzymes have a high biotechnological value, the focus on amylases, esterases, agarases and proteases are increasing and thus, will pave a way to utilize these novel enzymes in various industrial applications [36]. Particularly, cellulases posing cold-active capabilities and obtained from the microbes of Antarctic environments have vast industrial applications viz. food, brewery, feed, paper pulp and so on. In addition, the cellulases are having high values as they are abundantly utilized in the production of biofuels in the refining industry [37].
3.5 Purification and molecular weight determination of cold-active cellulase
The cold-active enzyme was recovered from the N. dassonvillei PSY13 culture supernatant and was purified as per the steps given in Table 2. The enzyme from the culture supernatant was processed through ammonium sulphate recovery and gel filtration chromatography using Sephadex G-50 followed by ion exchange chromatography (Q-Sepharose Fast Flow column). The active fraction (0.4M) was collected from the Q-Sepharose FF fractionation (Fig. 3A) and was concentrated; 5% recovery was achieved with 22.9-fold purification with a specific activity of 6.36 U/mg. The cellulase purification fold can vary depending on the methods and matrix used for purification. Islam and Roy [38] has purified the cellulase from Bacillus sp. and reported that it has 9.7-fold purification in the CM-cellulose fractionation, which is comparatively low than the present study. Another study has reported 39.1-fold purification attained by the Sephadex G-75 column purification for the cellulase produced by B. vallismortis [39], which is relatively higher than the present study. Pachauri et al. [40] has also worked on fungal cellulase and reported that he has obtained 14.82-fold purification with 25.8% yield. As mentioned in the previous statement, the purification fold and the specific activity of the enzymes depends greatly on the matrix / resin used in the purification process and thus helps to unfold the novel enzyme activity [41]. The enzyme was further spotted on CMC agar plate and incubated at 10 ºC and a strong cellulolytic activity was witnessed (Fig. 1E). The purified cold-active cellulase enzyme was observed with a mass of 48 kDa as a distinct band in the SDS-PAGE analysis (Fig. 3B). The mass of the cellulase enzyme was higher than the others (29.7 kDa and 36.6 kDa) and in most of the cases, the cellulase will be having the mass ranging between 20 and 60 kDa [42].
Table 2
Summary of the purification of the cold-active cellulase enzyme produced by N. dassonvillei PSY13.
Purification step | Volume (ml) | Protein (mg/mL) | Activity (U/mL) | Total activity (U) | Total protein (mg) | Specific activity (U/mg) | Yield (%) |
(NH4)2SO4 (70%) | 15 | 3.2 | 6.791 | 101.865 | 48 | 2.12 | 15 |
Sephadex G-50 | 11 | 1.7 | 4.76 | 52.36 | 18.7 | 2.80 | 11 |
Q-Sepharose FF | 5 | 0.09 | 0.572 | 2.86 | 0.45 | 6.36 | 5 |
3.6 Optimal pH and temperature ranges for better stability and activity of the enzyme
Optimal pH for cellulase activity was studied and a higher activity (> 90%) was recorded at pH 7.5 followed by pH 8.0 (80%) and pH 9.0 (70%), respectively. The enzyme was stable and active between pH 6.5 to pH 9.0 (Fig. 4A). Beyond this range, the enzyme was not stable and the activity was reduced. This was in agreement with the previous report, which showed a relatively higher activity at pH 7.5 [43]. More recently, Shajahan et al. [44] have reported the cellulase produced by B. licheniformis. NCIM 5556 was stable and active between pH 4.5 to 9.5, and the enzyme was highly active at pH 6.5. However, cellulase produced by the psychrotolerant yeast had a different optimal pH of 6.4 and thus, reported to be highly stable and active in that range [45].
The purified cellulase enzyme was found to be stable between 0 ºC to 30 ºC and the optimal working temperature was recorded as 10 ºC with nearly 80% of the relative activity (Fig. 4B). However, the relative activity of the cold-active cellulase enzyme was maintained > 70% between the range of 10 to 40 ºC. Beyond 40 ºC, the enzyme’s relative activity reduced gradually due to the instability of the enzyme in the hightemperature range. The higher catalytic nature of the cold-active enzymes (< 25 ºC) makes them novel biological catalysts. Li et al. [46] have reported the maximum activity of cellulase obtained at 10.4 ºC and in the present study, cold-active cellulase exhibited a strong cellulolytic activity at 10 ºC. In general, most of the cold-active enzymes have been reported to have the temperature optimum of 20 to 40 ºC. However, enzymes having higher catalytic activities (80%) at 10 ºC are considered novel [47]. Such lowtemperature dependency of enzymes makes them useful in various beverage and food industries where the process is performed under low temperatures. Therefore, the cold-active enzymes are holding more than 80% of the market share.