Donor recruitment and blood sample preparation
From January 2019 to June 2019, 20 SCI patients from Huashan Hospital, Fudan University were enrolled. Inclusion criteria included the following: (1) a clear history of trauma, and there were no neurological abnormalities of spinal cord injury before injury; (2) existing neurological abnormalities such as limb sensation, motor abnormality, and dysfunction of the bowel and bladder; (3) MRI examination showed spinal cord compression and spinal cord signal changes. Patients with treatment of methylprednisolone before blood taking, with a history of brain disease, with a history of spinal surgery were excluded. Peripheral blood was collected from 20 patients with SCI and 20 healthy donors with similar gender and age distribution, respectively. The Japanese orthopedic association (JOA) score, cervical dysfunction index (NDI) and American spinal injury association (ASIA) classification were used to assess the severity of SCI. The whole blood RNA was extracted using GeneJET Stabilized and Fresh Whole Blood RNA Kit (ThermoFisher, CA, USA) in accordance with the manufacturer’s protocol.
Quantitative real-time PCR (RT-PCR) analysis
Total RNA was extracted using TRIzol reagent (Invitrogen, San Diego, CA, USA) according to the manufacturer’s instructions, and quantification of mRNAs was performed using a 10-μl final reaction volume using SYBR Green PCR Master Mix (ThermoFisher, CA, USA). GAPDH mRNA was used as a housekeeping gene and relative expression levels of mRNAs were calculated using the comparative ΔΔCT method.
Animals
C57BL/6 CD73 knock out (KO) male mice used in our study were reproduced from those gifted by Prof. Thompson, Oklahoma Medical Research Foundation, Oklahoma City, USA. The wild-type (WT) male C57BL/6 mice were supplied by Shanghai SLAC Laboratory Animal Co., Ltd. (Shanghai, China). The animal experiments were approved by the Institutional Animal Care and Use Committee of Fudan University.
Establishment of SCI model and drugs treatment
Just as descripted in our previous study[24], mice were anesthetized with pentobarbital by intraperitoneal injection(35mg/kg). Each mouse was inflicted with spinal crush injury at the T8–T9 with Dumont-type forceps with a 0.2 mm spacer. We carried out the vertebrae laminectomies of T8-T9 with a pair of fine rongeurs, and the dura mater of mice was protected. The mice SCI model was made by lateral compression of the spinal cord with a depth of 0.2 mm for 20s. After operation, the mice were given intramuscular injection of penicillin, 20,000 units once to resist infection. For further studied the effect of AKT and HIF-1α on SCI, SC79 (40mg/kg in DMSO) and BAY87-2243 (0.5mg/kg and 4mg/kg in DMSO) were injected intraperitoneally into mice every day after the establishment of mice SCI model. The mice in the control group were injected with the same volume of DMSO at the same time point.
Locomotion recover assessment
The locomotor behavior after SCI was detected by the Basso, Beattie, and Bresnahan (BBB) locomotor recovery scale. This scale is based on the observation of hindlimb movements, stepping, and coordination in an open field and consists of a 21-point scale. SCI group and SCI+NBP group were assessed on postoperative days 1, 3, 7, 14, 21 and 28. An inspector blinded to the treatments assessed them for 4 min in an open field and got the score from 0 (no spontaneous locomotor activity) to 21 (normal coordinated gait with parallel paw placement).
Cell cultures
BV2 cells were cultured in DMEM (Gibco, Carlsbad, CA, USA) supplemented with 10% FBS (Gibco, Carlsbad, CA, USA), 50 g/ml streptomycin (Invitrogen, Carlsbad, CA, USA), and 50 U/ml penicillin in a humidified atmosphere of 95% air and 5% CO2. The plasmid of RNAi-CD73, pcDNA-CD73,RNAi-HIF-1 were constructed by Genechem Co., Ltd. (Shanghai, China) and then transfected into BV2 cells using Lipofectamine™ 2000 reagent (Invitrogen, Carlsbad CA, USA) following the protocol stipulated by the manufacturer. Different combinations of LPS (1 μg/ml), adenosine (10μM), MRS1706 (0.3μM), MK2206 (3μM) were added to the media 24h after plasmid transfection, and 8h later, mRNA and protein were harvested.
RNA sequencing and functional enrichment analysis
Total RNA was isolated from cells using the Trizol (Invitrogen,Carlsbad CA, USA) according to the manufacturer’s protocol. RNA integrity was evaluated using the Agilent 2200 TapeStation (Agilent Technologies, USA) and each sample had the RIN above 7.0. Subsequently, the purified RNAs were subjected to first strand and second strand cDNA synthesis following by adaptor ligation and enrichment with a low-cycle according to instructions of NEBNext® Ultra™ RNA Library Prep Kit for Illumina (NEB, USA). The purified l library products were evaluated using the Agilent 2200 TapeStation and Qubit®2.0(Life Technologies, USA) and then diluted to 10 pM for cluster generation in situ on the pair-end flow cell followed by sequencing (2×150 bp) HiSeq3000. The clean reads were obtained after removal of reads containing adapter, ploy-N and at low quality from raw data. HISAT2 was used to align the clean reads to the mouse reference genome mm10 with default parameters. HTSeq was subsequently employed to convert aligned short reads into read counts for each gene model. Differential expression was assessed by DEseq using read counts as input. The Benjamini–Hochberg multiple test correction method was enabled. Differentially expressed genes were chosen according to the criteria of fold change > 2 and adjusted p-value < 0.05. All the differentially expressed genes were used for heat map analysis and KEGG ontology enrichment analyses. For KEGG enrichment analysis, a P-value < 0.05 was used as the threshold to determine significant enrichment of the gene sets.
Enzyme-linked immunosorbent assay
In cell culture supernatants or mouse spinal cord homogenate, the measurement of protein levels of IL-1β, IL-6 and TNF-α was taken using the commercial ELISA kits from Sigma (Sigma-Aldrich, St. Louis, MO, USA) according to the manufacturer’s instructions.
Cytotoxicity assay
The release of lactate dehydrogenase (LDH) was detected to determine the cytotoxicity using the LDH Cytotoxicity Assay Kit (Beyotime, Shanghai, China) following the manufacturer’s instructions.
Western blot analysis
Protein of spinal cord tissue and BV2 cells was homogenized in radioimmunoprecipitation assay (RAPI) lysis buffer, and protein concentrations were determined using the BCA assay. Protein samples were fractionated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and transferred to nitrocellulose membranes. Following blocking for 1 h with 5% skimmed milk in TBST, membranes were incubated with antibodies included NLRP3 (1:1000, Abcam, ab214185), PI3K (1:1000, CST, 4228), AKT (1:1000, CST, 2920), p-AKT (1:1000, CST, 4070), Foxo1 (1:1000, CST, 14952), p-Foxo1 (1:1000, CST, 9641), GSDMD (1:1000, Abcam, ab210070), ASC (1:1000, CST, 67824) and GAPDH (1:2000, Abcam, ab8245) overnight at 4°C. After being washed in TBST, membranes were incubated with HRP-conjugated secondary antibody at room temperature for 1 h, and protein was detected using an enhanced chemiluminescence (ECL) kit. Signal intensities were quantified by gel imaging system (UVP LLC, Upland, CA, USA).
Immunohistochemical assessment
At the third day after SCI, different groups mice were deeply anesthetized with 10 % chloralic hydras (3.5 ml/kg, i.p.) and perfused with 0.9 % NaCl, followed by 4 % paraformaldehyde in 0.01 M phosphate-buffered saline (PBS, pH= 7.4). Spinal cord segments near the lesion epicenter were collected. Three transverse paraffin sections (25μm thick) were mounted on poly-L-lysinecoated slides. For immunohistochemical analysis, deparaffinized sections were incubated with H2O2 and methanol for 10 min to block endogenous peroxidase, and then incubated for 30 min with serum-blocking solution. The sections were then incubated with primary antibodies of CD73 (1:100, Abcam, ab175396), GSDMD (1:100, Abcam, ab210070) and CASP-1 (1:100, Abcam, ab1872) for 1 h, followed by incubation with HRP-conjugated anti-rabbit secondary antibodies for 30 min. Bound antibodies were visualized by incubation with DAB for 10 min. All images were captured using a Nikon ECLIPSE Ti microscope (Nikon, Japan).
Immunofluorescence assessment
Spinal cord tissue samples were harvested as described above. BV2 cell samples were fixed with 4 % paraformaldehyde in 0.1 M phosphate buffer (pH 7.4) for 15 min after the treatment described in cell cultures. Then all samples were blocked for 1 h with 1 % bovine serum albumin containing 0.3 % Triton X-100, followed by incubation (overnight at 4 °C) with GSDMD (1:100, Abcam, ab210070) and CASP-1 (1:100, Abcam, ab1872) the primary antibodies. Then all the samples were incubated (for 2 h at room temperature) with their respective secondary antibody: Dylight (Dy)488- and Dy594-conjugated secondary antibodies (all 1:1000; Jackson ImmunoResearch, West Grove, PA). All images were acquired using Nikon ECLIPSE Ti microscope (Nikon, Japan).
Promoter cloning and generation of Dual-luciferase reporter assay
A -2000/+200bp mouse GSDMD promoter of C57BL/6J mouse genomic DNA was cloned and inserted in the pGL3 basic vector (Promega, Madison, WI, USA). Further deletion generated -1450/+200bp, -900/+200bp, -300/+200bp, +50/+200bp reporter plasmids. Mutant GSDMD reporter plasmids were generated based on -300/+200bp plasmid. BV2 cells were cotransfected with luciferase reporter plasmids, pRL-TK reporter plasmid (control reporter), and foxo1 plasmid (pc-foxo1). After transfection for 24 hours, cells were harvested and measured using the toolVeritas 9100-002 (Turner BioSystems, Sunnyvale,CA, USA), and luciferase activity was divided by the Renilla luciferase activity to normalize for transfection efficiency.
Chromatin Immunoprecipitation assay
ChIP assay was performed using a ChIP assay kit (Abcam, Cambridge, UK) according to the manufacturer’s protocol. In brief, primary antibodies of foxo1 (1:500, CST, 2880) or IgG (1:500, Abcam, ab172730) were used. DNA–protein cross-linking complexes were collected, and purified DNA was subjected to qPCR with SYBR Green PCR Master Mix (ThermoFisher, CA, USA).
Statistical analysis
All results are expressed as mean ± standard deviation.Student’s unpaired t tests and two-way analysis of variance (ANOVA) followed by Dunnett’s test were used to analyze data. A p value of less than 0.05 was considered to be statistically significant. All statistical analyses were done with the SPSS 14.0 software.