Constructs of sucrose isomerase gene
Constructs were prepared by recombining four parts. The first part is a 1.2 Kb sugarcane ScR1MYB1 A1 promoter (GenBank EU719199) [30] or a sugarcane loading stem gene promoter (LSG2, GeneBank JQ920356) [33]. The second part is a fragment encoding signal peptide of sweet potato sporamin NTPP as described [29, 37]. The third part is a modified gene version (GenBank KC147726) encoding the UQ68J SI enzyme [23, 30]. The fourth part is a terminator complex including three contiguous plant transcriptional terminator regions [30] intended to block read-through transcription in either direction (Fig. S2).
Sorghum transformation
Sweet sorghum has been considered as one of the most recalcitrant crops in terms of genetic transformation [32]. To successfully introduce the engineered SI construct into the large biomass sweet sorghum lines, an inbred line of grain sorghum Tx430 was first transformed. Then the Tx430 transgenic lines were used as a male partner for crossing with an elite sweet sorghum cultivar Rio as a female partner. Rio is advantageous for its large biomass and has been used as a male-sterile parent line.
Each of the constructs, with the sucrose isomerase gene driven either by LSG2 promoter or ScR1MYB1 A1 promoter, was co-precipitated on gold particles with pUKN selectable marker construct [38, 49]. Transformation protocol by particle bombardment, conditions for selection of transgenic lines, plant regeneration, and growth conditions in the glasshouse were described as GQ Liu, BC Campbell and ID Godwin [49]. Briefly, embryogenic calli derived from immature embryos (11-15 days post-anthesis) were used as explants for transformation. Transformed calli were cultured for 8-12 weeks on selective regeneration media containing 30 mg L−1 geneticin with subculturing onto fresh media fortnightly. Putative transgenic shoots were subsequently subcultured onto selective rooting media for 4 weeks following by a 3-day hardening off period. Details of the sorghum tissue culture system were used as described by GQ Liu, EK Gilding and ID Godwin [50].
PCR screening
Genomic DNA was extracted from the young leaves of the transgenic and non-transgenic plantlets prior to moving into the glasshouse. Extracted DNA quality and concentration were determined using a NanoDrop 2000 spectrophotometer (Thermo Scientific). To confirm the sucrose isomerase (SI) gene, specific primer pairs were designed (Forward: 5’-AGCAACCCGATCTCAACTGG-3’ and Reverse: 5’-ACGGAGTCGTTCCATTGCAT-3’). PCR screening was undertaken in 20 μl reactions each containing 20 ng of template DNA, 0.5 μM of each specific primer and 10 μl of Taq 2× Master Mix (New England BioLabs). PCR reactions were performed using a BIO-RAD T100 Thermal Cycler®. The PCR program comprised of an initial denaturation at 95 °C for 7 min, followed by 35 amplification cycles consisting of; 95 °C for 30 s, 60 °C for 30 s, 72 °C for 1 min, and a final elongation step of 72 °C for 7 min. PCR products were separated by gel electrophoresis at 120 V for 1.5 h in 1.0% agarose gels (Fig. S3).
Growth conditions and crossing
Following the hardening off period, SI-positive transgenic plantlets and negative controls (Healthy transgenic plantlets with NPTII-positive but SI-negative in genomic PCR) were transferred to 20-liter pots with three plantlets per pot. Pots were randomized and grown in a temperature-controlled glasshouse (18–28 °C) for around 95 days until physiological maturity. Generally, transgenic plants and the controls started flowering 60 days after moving into the glasshouse. The transgenic plants grew as healthily as the control plants and appeared to be normal in morphology (Fig. S1). Starting from the same time when the transgenic plantlets were moved to the glasshouse, seeds of the sweet sorghum Rio were sowed in the same glasshouse in different batches with a one-week interval to match the flowering of the desired transgenic line for crossing. The crossing was performed as described [51].
Measuring sugar concentrations by high-performance liquid chromatography electrochemical detection (HPLC-ED)
For stalk samples, a transverse tissue slice was taken at the mid-point of each designated internode and cut into radial sectors that were proportionately representative of the different stalk tissues by area. Sectors were placed on a support screen (Promega Spin Basket, Madison, WI) within a 1.5-mL microfuge tube, liquid nitrogen frozen for 20 min, and then thawed on ice and centrifuged at 10 000 g for 15 min at 4 °C to collect the juice. After the collected juice was boiled for 5 min to inactivate enzymes, the insoluble material was removed by centrifugation at 16 000 g for 20 min at 4 °C. In comparative tests conducted on internodes, this procedure gave sugar concentrations equivalent to the manual crushing of stalk samples to extract the juice. Moreover, it was adaptable to large scale samples. FWs were recorded before and after juice extraction and residual dry weights (DWs) were measured after 72 h at 75 °C for tissues, or 90 °C for juice samples. Water contents were measured in alternate subsamples to those used for juice extraction and analysis.
The resolution and quantification of IM, trehalulose, sucrose, glucose and fructose were achieved by isocratic HPLC at high pH (120 mM NaOH), using a Dionex BioLC system (Sunnyvale, CA) with PA20 analytical anion exchange column and quad waveform pulsed ED, with calibration against a dilution series of sugar standards for every sample batch [14, 37]. Sugar concentrations were corrected for dilutions in the procedure and presented as sucrose equivalents in juice. Total sugar contents were calculated on an FW and DW basis, taking account of the residual juice in internode tissues after centrifugation (up to 60% of total juice) and assuming 10% reduction in solute concentration in residual juice relative to first expressed juice, as typically observed in the industry [52]. For leaf samples, about 1 g FW of leaf blade without midrib was taken at one-third of the distance from the dewlap to the leaf tip. For root samples, about 0.5 g FW of young roots was taken from the interface between the soil and pot. Fluids were extracted and assayed by the freeze-thaw-centrifuge-HPLC method described above for stalk samples.
Gas exchange and chlorophyll fluorescence measurements
The photosynthetic electron transport rate was estimated from the fluorescence light curve generated using a fiber-optic MINI-PAM/F (Heinz Waltz GmbH, Effeltrich, Germany) and leaf-clip holder 2030B positioned at one-tenth of the distance from the dewlap to the leaf tip. The MINI-PAM light intensity, saturation pulse intensity, saturation pulse width, leaf absorption factor and illumination time were set at 680 µmol/m2/s, 680 µmol/m2/s, 0.8 s, 0.84 and 10 s, respectively. The internal temperature of the MINI-PAM was controlled between 25 and 30 °C during measurement. An LI-6400 portable photosynthesis system (LI-COR, Lincoln, NE, USA) was used to measure CO2 fixation rates on the same leaves. Measurements were made on at least three replicate plants per progeny.
Plasmalemma vesicle (PMV) isolation and transport assays
The blades of the second and third leaves from the top without midribs (12.5 g FW) were homogenized in 50 mL solution which contains 240 mM sorbitol, 50 mM N-2-hydroxyethylpiperazine-N’ 2-ethanesulphonic acid (HEPES), 3 mM ethyleneglycol-bis (βaminoethylether)-N, N’-tetraacetic acid (EGTA), 3 mM dithiothreitol (DTT), 10 mM KCl, 0.5% bovine serum albumin (BSA), 0.6% polyvinylpyrrolidone (PVP) and 2 mM phenylmethyl sulphonyl fluoride (PMSF) (adjusted to pH 8.0 using solid Bistris propane) at 4 °C. The homogenate was filtered through four layers of cheesecloth to remove tissue debris and then centrifuged at 10 000 g for 10 min to remove mitochondria and chloroplasts. Microsomal membranes were pelleted by centrifugation at 50 000 g for 60 min. PMVs were purified from the microsomal fraction by phase partitioning [35], washed in 25 mL of sorbitol-based re-suspension buffer (SBRB) (330 mM sorbitol, 2 mM HEPES, 0.1 mM DTT, 10 mM KCl, pH 8.0 with solid Bistris propane), repelleted by centrifugation at 50 000 g for 60 min and resuspended at 3–5 mg FW mL-1 of re-suspension buffer. The phase-purified PMVs were layered over a 20%−50% sucrose gradient in 2 mM HEPES, 1 mM HCl and 1 mM DTT (pH 8.0 with solid Bistris propane), centrifuged for 15 h at 100 000 g and collected in 1-mL fractions. The fractions were washed in 11 mL SBRB and pelleted by centrifugation at 100 000 g for 60 min. The pellet was suspended in 0.4 mL of SBRB, checked for purity using routine tests for enzymatic activities characteristic of other cellular membrane types, and used for transport experiments.
Transport assays were conducted at 12 °C using three replicate reactions per treatment (Bush et al., 1996). Briefly, for each reaction mixture, 20 µL of resuspended PMVs were diluted into 400 µL of assay buffer (as for SBRB, except adjusted to pH 6.0 with solid 2 [N-morpholino ethane sulphonic acid (MES)] containing 0.2 µCi (14C)sucrose and unlabelled sucrose to the desired concentration. At each time point, vesicles from one reaction mixture were collected on 0.45-µm filters and rinsed three times with 0.6 mL of assay buffer containing only unlabelled sucrose (1 mM). The accumulated radioactivity was measured by scintillation spectrometry. The difference between samples with and without 5 µM carbonyl cyanide m-chlorophenyl hydrazone (CCCP) was defined as ∆pH-dependent sucrose transport.
Internode tissue fractionation and enzyme assays
Transverse sections of each internode were divided into the outer rind of 2 mm thickness and two internal concentric cylinders at equal distances along the stalk radius. Of these, the central parenchyma-rich zone and the peripheral vascular-rich zone were examined for invertase activity. Furthermore, vascular bundles were separated by dissection from parenchyma tissue in the central zone for separate assays. The separated tissues were frozen immediately in liquid nitrogen for enzyme extraction, followed by the determination of CWI activity, using three replicate plants or dissected tissue subsamples per assay [53].
SI enzyme was extracted by grinding the frozen cells in a chilled mortar using three volumes of extraction buffer that contained 0.1 M Hepes-KOH buffer(pH7.5), 10 mM MgCl2, 2 mM EDTA, 2mM EGTA, 10% glycerol, 5 mM DTT, 2% polyvinylpolypyrrolidone and 1x complete protease inhibitor (Roche, Mannheim, Germany). The homogenate was immediately centrifuged at 10 000 g for 15 min at 4 °C. The supernatant was immediately desalted on a PD-10 column (GE Healthcare, Buckinghamshire, UK) that was pre-equilibrated and eluted using the extraction buffer. Protein concentration was assayed by the Bradford reaction using a Bio-Rad kit (Hercules, CA, USA) with bovine serum albumin standards. SI activity was measured by incubating enzyme extract with 292 mM sucrose solution in 0.1 M citrate-phosphate buffer (pH 6.0) at 30 °C, and testing for isomaltulose accumulation over 80 min by HPLC-ED as described above.