Cell culture
The human esophageal cancer cell lines KYSE150 was obtained from Chines academy of medical sciences Tumor Cell Bank (Beijing, China) and cultured in Roswell Park Memorial Institute (RPMI 1640, HyClone) containing 10% fetal bovine serum (FBS) (HyClone), 10units/mL penicillin, and 10mg/mL streptomycin and maintained in humidified incubators at 37°C and 5% CO2.
X-ray and 125I seeds irradiation
The irradiation method was performed as previously described [13]. Briefly, Liner accelerators producing 6 MV X-ray beams were provided by the 306th Hospital of the People’s Liberation Army (Beijing, China). The dose rate was 400 cGy/min and the source-to-skin distance (SSD) was 100 cm. The surface of the culture dishes was covered by 1.5 cm thickness packing materials. Radiation dose were 0, 2, 4, 6 and 8Gy. An in-house model for in vitro iodine-125 seed irradiation was developed for this study. The activity of the single seed used in this study was 92.5 MBq (2.5 mCi), which translates to an initial dose rate of 2.77 cGy/h to model cells. The exposure times for delivering doses of 2, 4, 6 and 8Gy were 73.7, 154.6, 245.8 and 345.1 hours (i.e., 3.07, 6.44, 10.24 and 14.38 days), respectively [14,15]. The absorbed dose was equivalent to SDR treatment.
Colony formation assay
Colony formation assay was used to detect the radiation sensitivity of KYSE150 cells after different modes irradiation. Different numbers of cells were plated into 6-well plates depending on the doses of radiation: 0Gy (100), 2Gy (200), 4Gy (800), 6Gy (1600) and 8Gy (3200). And, the transfected cells were subjected to radiation at the above indicated doses. Then, the cells were cultured for 14 days to form colonies, and next, stained with methylene blue. Those colonies (≥50 cells) were then counted. The experimental data was fitted to the single-hit multi-target model to make the survival curves of different groups.
MTT proliferation assay
MTT proliferation assay was used to measure KYSE150 cell viability after two modes irradiation on the doses of radiation: 0Gy, 1Gy, 2Gy and 4Gy, after cell culture incubation (24, 48 and 72h), 10μl MTT (dissolved in RPMI-1640, 5mg/mL) was added to well, and plates were further incubated at37 °C for 4h. Finally, the purple formazan crystals were dissolved by adding 100μl acid-isopropanol (0.04N HCI in isopropanol) into each well. Absorbance was then measured at 550nm against reference wavelength of 630nm and stimulation index (SI) was determined. Te SI is expressed with average OD value in the test group divided by average OD value in negative controls. Cell proliferation activity (%) = (each dose point) Absorbance value/(0 Gy) Absorbance value.
Cell cycle analysis
Cells after two modes irradiation on the doses of 4Gy for 72h, were harvested and washed with PBS for 3 times and then fixed in pre-cooled 70% ethanol overnight at -20°C. Fixed cells were then pelleted through centrifugation, washed with PBS and incubated with 20 ug/mL RNase A (Sigma-Aldrich) in PBS at 37°C for 30 min. Cells were then analyzed on a BD FACS Calibur (BD bioscience, San Jose, CA, USA) after stained with 10 mg/ml PI (Sigma-Aldrich) in 0.1% Triton X-100. Cell cycle distribution was analyzed with the ModFit LT software (Verity Software House, Topsham, ME).
Cellular apoptosis assay
Cellular apoptosis was evaluated by FITC-conjugated Annexin V/propidium iodide (PI) staining followed by flow cytometry analysis.
Cell morphology observation
Cell morphology changes were observed under phase contrast microscope (Olympus IX71, Japan) after two modes of irradiation and photographed (magnification, ×800), which was analyzed by flow cytometry.
Detection of intracellular reactive oxygen species (ROS)
ROS labeled by DCFH-DA probes was measured by flow cytometry in FL1 channel, at the meantime, mitochondria was detected by flow cytometry in FL1 channel and fluorescence microscope after Mito-Tracker Green fluorescent probe stained.
Detection of ATP
ATP detection kit was used to measured ATP level after two modes of irradiation, the detail was followed by protocol. ATP concentration was standardized to nmol/mg after BCA protein
RT-qPCR assay of endoplasmic reticulum stress (ER stress)
ER stress was measured by GPR78/Bip1 and PERK changes in gene expression, which was detected by Real-time PCR. According to the product manual, TRIzol reagent (Invitrogen) was applied to isolate total RNA from the cell samples. Then, NanoDrop (Thermo Fisher Scientific, 2000C) was used to measure the concentration of RNAs. Reverse transcription was performed according to standard protocols using a RevertAid™ II First Strand cDNA synthesis Kit (Thermo Fisher Scientific Inc., Waltham, MA USA). For detection of mRNA, Talent qPCR PreMix (SYBR Green) (TIANGEN, China) was used to detect the mRNA expression. GAPDH was amplified as an internal standard. The primers for PCR were as follows:
GPR78/Bip1-F
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5’- GAACGTCTGATTGGCGATGC-3’
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GPR78/Bip1-R
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5’- GAGTCGAGCCACCAACAAGA-3’
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PERK-F
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5’- GAACCAGACGATGAGACAGAG-3’
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PERK-R
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5’- GGATGACACCAAGGAACCG -3’
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GAPDH-F
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5’-ATCTCTGCCCCCTCTGCTGA-3’
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GAPDH-R
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5’-GATGACCTTGCCCACAGCCT-3’
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Acridine orange (AO) staining was used to detect autophagy
AO staining was used to detect level of autophagy in KYSE150 cells and quantitative was measured by flow cytometry with red: green signal intensity ratio, which was performed as previously described[16]. AO solution with final concentration of 1g/ml was used to stain adherent cells at 37°C for 15 min, then the buffer solution without phenol red was used to rinse cells for 3 times. Cells was digested with trypin and resuspended in 5% serum PBS, cell concentration was adjusted and detected by flow cytometry. The excitation light was 488 nm, and the emission light of green (510-530nm) and red (640-650nm) corresponded to FL1 and FL3 channels in flow cytometry (Beckman Coulter Epics XL, USA), respectively. The ratio of FL3 to FL1 represented the level of autophagy.
Western blot and antibodies
The whole-cell lysate was extracted with RIPA lysis buffer (50mM Tris [pH 7.4], 150mM NaCl, 1% Triton X-100, 1% sodium deoxycholate, 0.1% SDS, sodium orthovanadate, sodium fluoride, EDTA, from Beyotime Company). Then BCA assay was used to measure the protein concentration. Afterwards, 30 µg protein was loaded onto sodium dodecyl sulfate-polyacrylamide gel (SDS-PAGE) to separate. After that, proteins on the gels were transferred to polyvinylidene fluoride (PVDF, 0.22um, Millipore Company) membrane, and the transferring time was based on the protein molecular weight. Then, the membranes were incubated with primary antibodies (at the appropriate dilution according to the supplementary table 6) in 6 ml primary antibody dilution buffer with gentle agitation overnight at 4°C. Followed that, the membranes were incubated with Anti-rabbit/mouse IgG, HRP-linked antibody (1:2000, Beyotime Company) in 10 ml secondary antibody dilution buffer with gentle agitation for 2 hours at room temperature. After washing three times for 5 min each with 15 ml of Tris Buffered Saline with Tween® 20 (TBST), the membranes were exposed to get the blot images with 1X SignalFire™ ECL Reagent (Millipore Company). anti-caspase-3, anti-Bim, anti-AKT, anti-mTOR, anti-p-S6, anti-p-mTOR, anti-ATG5 ,anti-Beclin-1, anti-DNA-PKcs, anti-Ku80 and anti-Ku70 antibodies were obtained from Cell Signling Technology, Inc (Cell Signaling Technology, MA, USA). Anti-CyclinB1 and anti-Bcl-2 antibodies were obtained from Abcam, Inc (Abcam,USA). Anti-LC3 were obtained from MEDICAL&BIOLOGICAL LABORATIORIES CO, LTD, Inc (MEDICAL&BIOLOGICAL LABORATIORIES CO, LTD, Japan).
Statistics analysis
Each experiment was performed ≥ 3 times and values were expressed as mean ± S.D. Data analysis was done using the GraphPad Prism. The experimental data were analyzed using SPSS software 16.0 (SPSS, Inc., Chicago, IL, USA). Statistical significance among different groups was measured by Student’s t test or one-way analysis of variance. A P-value < 0.05 was considered to represent a statistically significant difference.