Cell Culture
The Breast cancer cell lines (MCF-7 and MDA-MB-231) were purchased from the Pasteur Institute of Iran (NCBI codes: C135, and C578 respectively).They were cultured at RPMI 1640 with 10% FBS and were incubated at 5% CO2 and 37°C. The cells were passage when their confluences reached about 95% and cell medium was alter every 36h regularly according to the duplicate time of the cells.
Antisense Oligonucleotides design
The Antisense Oligonucleotides (ASO) was design according to the published nucleotide sequence of Bcl-2 mRNA in the Ensembl database (https://asia.ensembl.org/Homo_sapiens). The secondary structure of Bcl-2 mRNA predicted by minimum free energy (MFE) approach (http://rna.tbi.univie.ac.at//cgibin/RNAWebSuite/RNAfold.cgi). The sequences of ASO was 5 ́- GTTCTCCCAGCGTGCGCCATCC-3'. We bought it from the Gorgon Gene Inhibition Biotechnology Company (Iran).
Primers design for RT-PCR analysis
The PCR primers were design according to the published nucleotide sequence of Bcl-2 and GAPDH mRNA in the RefSeq database (https://ncbi.nlm.nih.gov/RefSeq), and the Oligo Primer analysis software version 7. The sequences of Bcl-2 primers were, forward, 5 ́-GACGACTTCTCCCGCCGCTAC-3', and reverse, 5 ́-TCCCCCAGTTCACCCCGTCC-3 ́. The sequences of GAPDH primers were, forward, 5 ́-CCTGCCGTCTAGAAAAACCTGCCAA-3 ́, and reverse, 5 ́-CAGCGTCAAAGGTGGAGGAGTGGG -3 ́. Amplicons sizes were 177 bp and 196bp respectively.
RNA isolation and cDNA synthesis
Total RNA was isolated from MDA-MB-231 and MCF-7 cell lines using the TRIzol Reagent (Invitrogen) according to the manufacturer's instructions. In addition, the isolated RNAs treated with DNase1 (YT8054, Iran) and then the integrity and quality of total mRNA was ascertained by gel electrophoresis and the 260/280 ratio spectrophotometer respectively. The first strand cDNA synthesized by using the cDNA synthesis Kit Yektatajhiz Company (YTA; Iran) according to the manufacturer's instructions.
RT-PCR analysis
The Real-time RT-PCR was use to investigate the expression of Bcl-2 relative to a housekeeping gene (GAPDH) in different conditions. It was carrying out by using the ABI Step One Real Time Instrument (Applied Bio-systems, USA). All the reactions were performed in triplicate and in a total volume about 12 μl containing 1-2 µl cDNA, 0.5 μl each primer (5 pmol), 5 µl Master-mix (RealQ plus SYBR Green PCR Master Mix, Ampliqon; Denmark) and 4-5 µl water. The RT-PCR machine conditions were, 10 min at 95°C; 45 cycles at 95°C for 30 sec, 60°C for 30 sec, and 72°C for 30 sec.
Tamoxifen preparation
The Tamoxifen citrate salt is an estrogen receptor antagonist. Due to the low solubility of Tamoxifen in aqueous medium, the methanol used to prepare the Tamoxifen (see Additional file 1).
Lipofectamine preparation
The Lipofectamine 2000 (Invitrogen) used in the form of complex with the ASO based on 1:1 (w/w).The Lipofectamine (100 µg/ml) was allowed to complex with antisense oligonucleotides (ASO) (25,125,250,500 and 1000 nM) in serum and antibiotic free medium before dilution and addition to cells.
Nano-complex (Micelles/Niosome) preparation
The nano-complex (micelles/niosome) was prepared based on our previous research with some modifications (25). The cationic nano-complex comprising polyethylenimine (PEI), tween80, squalene was synthesizing. Tween 80 & squalene was in molecular ratio 1:1 and PEI concentration was according to ratio of PEI to ASO (1). Electron microscopy were use to examine the morphology of the micelles/niosome. The zeta potential, size, and Polydispersity index (PDI) of the vesicles in PBS (pH 7.4) analyzed by DLS (Zetasizer Nano ZS; Malvern Instruments, Malvern, UK) using an argon laser beam at 633 nm and a 90° scattering angle (Table 1).
ASO and Nano-complex (micelles/Niosome) Preparation
The tween80 and squalene were dissolving in chloroform and methanol (ratio 3:2). This emulsion was rotate in vacuum rotary evaporator for 1h at 45°C until, thin film formed. Thin film was incubated in 37°C shaker for overnight and then it was dissolved in PBS and was sonicated for 30min. Afterward, to purify lipid particles, it was filtered by 22 micron filters. Finally, ASO was adding to the lipid Nano size particles with molar ratio of 1:1. To enhance electrostatic interaction, the final emulsion was rotate for 30 seconds and incubated for 30 minutes at 37°C.
ASO, Nano-complex (Micelles/Niosome) and Tamoxifen Preparation
It was same as ASO and micelles/niosome preparation, but had difference in Tamoxifen loading process. Tamoxifen loading process was formulating using by nano-precipitate technique; 3ml of chloroform and 2 ml of methanol (in which 2 mg Tamoxifen was dissolve) were introduce to 2ml aqueous phase drop containing surfactant (Tween 80) and helper lipid (Squalene). The gel retardation assay has shown the ability of ASO packaging by PEI to form PEI/ASO complexes. PEI/ASO at various ratios was prepared. The resulting PEI/ASO various products subjected to 2.5 % agarose gel electrophoresis and were visualize by ethidium bromide staining (Data not shown).
Transfection of the cell lines
Approximately 5×105 cells of two breast cancer cell lines (MDA-MB-231 & MCF-7) were incubated in RPMI-1640 with 10% FBS for 24h. Then, the media was replace and the cells were transfected with 125nM, 250nM, 500nM and1000nM of Tamoxifen / ASO / Lipofectamine / ASO and Lipofectamine /ASO, Lipofectamine and Tamoxifen / Niosome/ ASO and Niosome /ASO, Niosome and Tamoxifen respectively. They were incubates again for 4h at 37°C. Each sample had a normal control.
Cellular analysis
The cells were culture in a 96-well plate. The labeled scrambled sequence with 5'-Cy3 was formulating in ASO - PEI - Lipid complex. The internalization observed by confocal fluorescent Microscopy (Nikon, Japan).
MTT assay
The MTT {3-[4, 5-dimethylthiazol-2-yl]-2, 5-dipheyl tetrazolium bromide} powder (Sigma Aldrich Company, Germany) was use to evaluate cells viability based on NADPH-dependent cellular Oxidoreductase enzyme. NADPH-dependent cellular Oxidoreductase enzyme revives the Tetrazolium dye (MTT) to its insoluble Formazan, which has a purple color. After an incubation period, it was added 100 µl DMSO (Dimethyl sulfoxide, Sigma Aldrich Company, Germany) to solve insoluble Formazan and its absorbance was measure at 570 nm. The MCF7 and the MDA-MB-231 cell lines were seed at a density of 12×103 /200 µL into 96 well chamber slides and were treat with desired concentrations of agents including Tamoxifen, ASO and micelles/niosome. Various concentrations of Tamoxifen/ASO/Lipofectamine/Niosome/ASO and Lipofectamine/ASO and Lipofectamine and Tamoxifen/ASO and Niosome/ASO and Niosome and Tamoxifen added to the each cell’s media respectively. After 24, 48 and 72h cells viability analyzed by spectrophotometer.
Apoptosis analysis
Normal, apoptotic and necrotic cells can distinguish by using the Annexin V-FITC/Propidium Iodide assay kit according to the manufacturer’s instructions (MabTag’s Company, Germany). Flow-cytometry technique used to assay the cells Apoptosis by Annexin V-FITC/Propidium iodide staining according manufacture's instrument (MabTag's; Germany). Data analyzed by Flowjo v software (BD Company, USA). In other words, Flow cytometry was use to assess cell viability after the addition of drugs such as Tamoxifen / ASO / Lipofectamine / ASO and Lipofectamine /ASO, Lipofectamine and Tamoxifen / Niosome/ ASO and Niosome /ASO, Niosome and Tamoxifen.
Statistical analysis
Expression data analysis was carried out by using the LinReg software version 11.0 (http://LinRegPCR.nl) and the Relative expression software tool (REST©) according to the manufacturer’s instructions respectively. The graphs designed by Graph pad Prism 8 software. All data expressed as the means ± SEM (standard error of the mean). A one-way ANOVA and t-test performed to determine the statistically significant differences among groups.