Preparation of plant material
R. coriaria leaves (2 g), collected in the wild from the environs of Jerusalem and the Judean foothills, were cut with scissors and then ground with a mortar and pestle with 4 mL of 60% ethanol and liquid nitrogen. The dry samples were weighed, and 60% ethanol was added to the ground leaves to a final concentration of 50 mg/mL. The sample was then transferred to a 15-mL tube and centrifuged at 6000 rpm (10483 relative centrifugal force, RCF) for 10 min. The supernatant was filtered through a 0.45-µm filter into Eppendorf tubes and used as a stock solution for further separation and analysis.
Analytical and preparative HPLC analysis and fractionation
The sample profile was obtained from an UltiMate 3000 HPLC system coupled with WPS-3000T autosampler, HPG-3400 pump, and 3000 Rapid Separation Diode Array Detector (Thermo Fisher Scientific). Separation was performed on a Raptor ARC-18 LC column, 2.7 µm, 150 x 4.6 mm (Restek), using water/methanol (25:75, v/v) as the diluent, and an injection volume of 5 µL. The mobile phase consisted of Solution A (0.1% acetic acid) and then Solution B (100% methanol) at a flow rate of 1.5 mL/min. Six fractions were collected based on HPLC-detectable peaks. To obtain higher amounts of material in each fraction, preparative HPLC (Agilent Technologies 1260 Infinity II LC Systems, with multiple wavelength detector 1260 MWD VL, and a Kinetex 5 µm EVO C18 100A column, 250 x 21.2 mm from Phenomenex) was performed. The mobile phase consisted of Solution A followed by Solution B, with an injected sample concentration of 5 mg/mL and injection volume of 10 mL. The profile was determined at both 280 nm and 220 nm, and was found to be the same (only 220 nm is shown).
LCMS analysis of the fractionated extracts of R. coriaria leaves
Each of the samples of dried material was dissolved in 60% ethanol/water to 1 mg/mL, and 1 mL of sample was injected twice into a Dionex Q Exactive Plus liquid chromatography- mass spectrometry system (LCMS) (Thermo Fisher Scientific) consisting of a workstation with the Xcalibur v. 4.0 software package combined with Dionex SII LC control software, UltiMate SRD-3400 solvent rack and degasser, pulseless chromatography pump (UltiMate HPG-3400RS rapid separation pump), WPS-3000RS autosampler, column compartment TCC-3000RS, and photodiode array detector DAD-3000RS. Eluent flow was then guided to the Q Exactive Plus Orbitrap high-resolution high-mass-accuracy MS. Mass detection was performed as a full MS scan with low-energy collision-induced dissociation (CID) from 100 to 1500 m/z in either negative (first injection), or positive (second injection) ionization mode with electrospray (ESI) interface. Sheath gas flow rate was 30, auxiliary gas flow rate was 7, and sweep gas flow rate was 1 (arbitrary units). Electrospray voltage was 3500 V (-3500 for negative ESI) with a capillary temperature of 275 °C. Mass resolution was set to 140,000. Samples were separated on a Kinetex C8 reversed-phase column, 100 x 2.1 mm, particle size 2.6 mm, pore size 100 Å (Phenomenex). The mobile phase consisted of Solvent A (0.5% ACS-grade acetic acid in LCMS-grade water, pH 3–3.5), and Solvent B (100% acetonitrile, LCMS grade), at a flow rate of 0.20 mL/min. Gradient mode was used for all analyses, starting at 95% A and 5% B, to 5% A and 95% B over 30 min, maintained for 8 min, and a return to the initial ratio over 4 min. An 8-min equilibration interval was included between subsequent injections. The average pump pressure using these parameters was typically around 2900 psi for initial conditions.
Putative formulas of polyphenols and other compounds were determined by analysis of isotope abundance in the high-resolution mass spectral data with Xcalibur v. 4.0 software and determining the best-fitting empirical formula. Quantification was based on external standards of commercially available compounds. Database searches were performed using Reaxys (www.reaxys.com; RELX Intellectual Properties SA).
Antibacterial activity
The bacteria used in this study were: Escherichia coli ATCC 8739 DyoPak 4th pass, Escherichia coli K-12MG1655, Klebsiella pneumoniae derived from CDC 1100192, Staphylococcus aureus ATCC 6538 DyoPak 4th pass, and Bacillus subtilis ATCC 6633 DyoPak 4th pass.
Materials
Antibiotic–antibacterial solution (100×) consisted of 10,000 U penicillin, 10 mg streptomycin and 25 μg amphotericin B per mL (Sigma antibiotics mix). The following media were used: BBLTM Mueller Hinton II broth from BD (MH), Mueller Hinton agar (MHA) plates (NOVAmed), Luria broth (LB), LB agar plates (hylabs), ATCC medium: 778 Davis and Mingioli glucose minimal medium (MM), YPD broth (Sigma), and YPD agar with 2% glucose. 2,3,5-Triphenyltetrazolium chloride (TTC) was from Sigma, CT0998B blank discs were from Oxoid.
Disk diffusion test
Well and disk diffusion methods were used as described in the literature (22). Briefly, inoculum was suspended in MH broth and standardized to match a 0.5 McFarland standard (corresponding to approximately 1.5 x 108 CFU/mL). The inoculum was suspended overnight in MH and adjusted to a turbidity equivalent to OD600 = 0.5. Antibiotic mix and all antibacterial agents were diluted to 3.1–100 mg/mL in the MH broth. Disks (6 mm diameter) were brought to room temperature for 1 to 2 h. Drops (10 µL) from the specified dilutions of antibacterial agents were applied to a disk and left for 10–15 min for absorption and evaporation. MHA plates were warmed to room temperature and divided into sections. The bacterial suspension was swirled to ensure thorough mixing, and a sterile cotton-tipped swab was inserted into the suspension which was then evenly inoculated over the top of the MHA plates. The discs containing the test compounds at the specified concentrations were placed on the inoculated plates. The plates were placed for 3 h at 4 oC then incubated at 37 oC for 18–24 h. The next day, the zones of growth inhibition were measured by caliper using reflected light. All experiments were performed in triplicate and at least three independent experiments were performed for each bacterium and each extract.
MIC and MBC tests
The MIC test was performed in 96-well plates. Bacterial suspension was grown on LB agar plates and incubated for 18–24 h at 37 oC. Three to five colonies were selected from the fresh agar plate and transferred using a sterile loop into a sterile tube containing 5 mL LB broth solution. The tubes were incubated to a turbidity of 0.5 at OD600. Twofold serial dilutions of the antibiotics mix, as well as of all antibacterial agents, corresponding to a final concentration range of 0.08–10 mg/mL, were prepared in MM.TheMM solution was made up of Davis and Mingioli glucose minimal medium (K2HPO4, 7 g; KH2PO4, 3 g;sodium citrate·3H2O, 0.5 g; MgSO4·7H2O, 0.1 g; (NH4)2SO4, 1 g), distilled water to 1 L, 15 g agar, pH adjusted to 7.0. Filter-sterilized glucose (10%) was added to the medium to a final concentration of 0.2%. The bacterial suspension, adjusted to 1 x 108 CFU/mL (OD600 = 0.5) was diluted 1:100. A 50-µL aliquot of each dilution of the antibacterial agents being tested was distributed into wells of a 96-well plate according to the prepared plan, including a positive control (50 µL bacterial isolate + 50 µL sterile broth) and a negative control (100 µL sterile broth). Each well containing antibiotic solution was inoculated with 50 µL of bacterial suspension. The final inoculum was about 5 x 105 CFU/mL. A 10-µL sample from the positive control well was removed into a sterile Eppendorf tube holding 990 µL of the broth. Plates were incubated for 18–24 h at 37 oC. MIC was measured using the tetrazolium (TTC) test that measures cell viability (27), and MBC was measured using the drop test (28), where 10 µL was transferred from the well to a LB plate, and MBC was defined as the first droplet in which no live bacteria were found.
Inhibition of Botrytis cinerea growth in the presence of R. coriaria crude leaf extract
The pathogenic fungus Botrytis cinerea, and the plant Vitis vinifera (grape vine) were chosen for this test. The developed formulation was prepared for spray application to prevent secondary damage to the plant (such as burning). The ingredients of the formula in which R. coriaria leaf extract was dissolved were: glycerol as the stabilizer, water, an emulsifying mixture of mineral oil (surface) emulsified at 4% + 94% water + 2% emulsifier (glycerin monostearate), and 5% dimethyl sulfoxide (EOS). Glycerin monostearate (500 mg), 2 g EOS oil and 1 g glycerol were stirred at 80 oC. The prepared R. coriaria leaf extract was added with 5 g warm water. After 2 min of stirring, it was left to emulsify for 2 min while being chilled to 20 oC. The control formula was made in the same way without the R. coriaria extract.
The fungus Botrytis cinerea was grown on agar plates (standard PDA protocol). A disc-shaped leaf of Vitis vinifera was placed in the middle of the plate. The formulation with and without R. coriaria extract was sprayed on the plated leaf. Fungal-growth inhibition was observed after 24 and 72 h, compared to the control plate on which the fungus grew without the extract.