Relationship between WT1 mutations and clinical characteristics
The patients’ clinical characteristics are shown in Table 1. Overall, among the 870 pediatric patients with AML, 58 patients (6.7%) were identified with WT1 mutations. The white blood cell count (WBC) at diagnosis was significantly higher in WT1-mutated patients (median 56.9 × 109/L) than in WT1 wild-type patients (median 30.8 × 109/L; P = 0.041). In WT1-mutated group, the FAB subtypes were mainly M1, M2, and M4. A higher proportion of WT1-mutated patients had M4 morphology in comparison with WT1 wild-type patients (41.2% vs 25.9%; P = 0.018). We also evaluated the associations between WT1 mutations and cytogenetic and molecular alterations. In terms of cytogenetics, WT1 mutations were found more frequently in the normal cytogenetics subset (44.2% of WT1-mutated patients had normal cytogenetics compared with 22.3% of those without WT1 mutations; P < 0.001). Regarding molecular alterations, there was also a substantial overlap between WT1 mutations and FLT3/ITD, as shown in Table 1, 48.3% of those carrying a WT1 mutation were FLT3/ITD positive as opposed to 14.7% of patients without WT1 mutations (P < 0.001). Moreover, WT1-mutated patients more frequently showed high risk (40.7% vs 12.6%; P < 0.001). The treatment protocols for pediatric AML were equally distributed between these two groups (P = 0.058). However, there were no significant differences in the median age, the median of FLT3/ITD allelic ratio, NPM1, and CEBPA mutations between WT1-mutated group and WT1 wild-type group.
Table 1
Characteristics of pediatric patients with or without WT1 mutations
|
All patients
|
WT1-mutated case
|
WT1 wildtype case
|
P-value
|
Number (%)
|
870
|
58 (6.7%)
|
812(93.3%)
|
|
Age, median (year)
< 3years, n (%)
3 ≤ Age < 10years, n (%)
10 ≤ Age < 18years, n (%)
|
9.6
21(24.3%)
23(27.2%)
422(48.5%)
|
11.0
6 (10.3%)
19 (32.8%)
33 (56.9%)
|
9.5
205 (25.2%)
218 (26.8%)
389 (47.9%)
|
0.221
0.011
0.329
0.186
|
Sex
male, n (%)
female, n (%)
|
454 (52.2%)
416 (47.8%)
|
36 (62.1%)
22 (37.9%)
|
418 (51.5%)
394 (48.5%)
|
0.119
|
WBC, ×109/L,
Median (range)
|
31.7(0.2–610)
|
56.9(1.1–446)
|
30.8(0.2–610)
|
0.041
|
FAB classification: n (%)
M0
M1
M2
M3
M4
M5
M6
M7
|
20 (2.8%)
96 (13.4%)
193 (27.0%)
2 (0.3%)
193 (27.0%)
160 (22.4%)
11 (1.5%)
39 (5.5%)
|
1 (2.0%)
10 (19.6%)
11 (21.6%)
0 (0.0%)
21 (41.2%)
3 (5.9%)
4 (7.8%)
1 (2.0%)
|
19 (2.9%)
86 (13.0%)
182 (27.5%)
2 (0.3%)
172 (25.9%)
157 (23.7%)
7 (1.1%)
38 (5.7%)
|
0.001
> 0.999
0.181
0.362
> 0.999
0.018
0.003
0.005
0.351
|
Risk group: n (%)
Low risk
Standard risk
High risk
|
328 (39.0%)
391 (46.5%)
121 (14.4%)
|
15 (27.8%)
17 (31.5%)
22 (40.7%)
|
313 (39.8%)
374 (47.6%)
99 (12.6%)
|
< 0.001
0.079
0.022
< 0.001
|
FLT3/ITD
Positive, n (%)
Negative, n (%)
|
147 (16.9%)
722(83.1%)
|
28 (48.3%)
30 (51.7%)
|
119 (14.7%)
692 (85.3%)
|
< 0.001
|
FLT3/ITD allelic ratio, Median (range)
|
0.54
(0.03–9.50)
|
0.55
(0.03–5.19)
|
0.54
(0.03–9.50)
|
0.865
|
NPM1
Positive, n (%)
Negative, n (%)
|
66(7.6%)
802(92.4%)
|
3(5.3%)
63(94.7%)
|
63(7.8%)
748(92.2%)
|
0.794
|
CEBPA
Positive, n (%)
Negative, n (%)
|
49(5.7%)
817(94.3%)
|
1(1.7%)
57(98.3)
|
48(5.9%)
760(94.1%)
|
0.245
|
Cytogenetic status
Normal (n, %)
Abnormal (n, %)
inv(16)(n, %)
t(8;21) (n, %)
|
196(23.7%)
631 (76.4%)
106(12.8%)
128(15.5%)
|
23(44.2%)
29 (55.8%)
9(17.3%)
3(5.8%)
|
173(22.3%)
602 (77.7%)
97(12.5%)
125(16.1%)
|
< 0.001
0.317
0.046
|
HSCT in 1st CR
No (n, %)
Yes (n, %)
|
663 (83.8%)
128 (16.2%)
|
38 (84.4%)
7 (15.6%)
|
625 (83.8%)
121 (16.2%)
|
0.906
|
Protocol
AAML03P1 (n, %)
AAML0531 (n, %)
CCG-2961 (n, %)
|
91 (10.5%)
732 (84.1%)
47(5.4%)
|
7 (12.1%)
44 (75.9%)
7 (12.1%)
|
84 (10.3%)
688 (84.7%)
40 (4.9%)
|
0.058
0.679
0.074
0.031
|
CR status at end of course 1
CR, n (%)
Not CR, n (%)
Death, n (%)
|
656 (76.3%)
189 (22.0%)
15 (1.7%)
|
35 (60.3%)
20 (34.5%)
3 (5.2%)
|
621 (77.4%)
169 (21.1%)
12 (1.5%)
|
0.002
0.003
0.017
0.074
|
CR status at end of course 2
CR, n (%)
Not CR, n (%)
Death, n (%)
|
736 (87.2%)
88 (10.4%)
20 (2.4%)
|
38 (69.1%)
14 (25.5%)
3 (5.5%)
|
698 (88.5%)
74 (9.4%)
17 (2.2%)
|
< 0.001
< 0.001
< 0.001
0.136
|
CEBPA CCAAT enhancer binding protein alpha, CR complete remission, FAB French–American–British morphology classification, FLT3/ITD internal tandem duplication of the FLT3 gene, HSCT hematopoietic stem cell transplantation, NPM1 Nucleophosmin, WBC white blood cell count |
Clinical outcome and prognostic effect of WT1 mutations
The CR rate was determined for all patients after the first and second course of induction therapy. At the end of the first course of therapy, patients with WT1 mutations had a lower rate of CR (60.3%) compared with those without WT1 mutations (77.4%), and the difference was statistically significant (P = 0.002). At the end of the second course of therapy, 38(69.1%) of the 55 patients with WT1 mutations achieved a CR compared with 698 (88.5%) of 789 patients without WT1 mutations (P < 0.001). Taken together, WT1 mutations were significantly associated with low induction CR rates.
Next, we evaluated the survival data for all the 870 pediatric patients. The median follow-up time for the survivors was 5.6 years. As shown in Fig. 1a, WT1-mutated patients had a significantly worse 5-year EFS (21.7 ± 5.5%) compared with WT1 wild-type patients (48.9 ± 1.8%; P < 0.001). Moreover, patients with WT1 mutations had worse 5-year OS (41.4 ± 6.6%) than those without WT1 mutations (64.3 ± 1.7%; P < 0.001) (Fig. 1b). When analyses were restricted to patients having normal cytogenetics, there were significantly differences in outcome between patients with and without WT1 mutations (Fig. 1c, d) (5-year EFS: 15.2 ± 7.8% vs 51.8 ± 3.8%, P < 0.001; 5-year OS: 34.4 ± 10.4% vs 66.1 ± 3.7%, P < 0.001). In the subgroup of abnormal cytogenetics (Fig. 1e, f), WT1-mutated patients also had worse survival time compared with WT1 wild-type patients in terms of 5-year EFS (31.0 ± 8.6% vs 48.3 ± 2.1%, P = 0.027) and OS (48.0 ± 9.3% vs 64.6 ± 2.0%, P = 0.048).
Prognostic impact of WT1 and FLT3/ITD mutations
Survival data for patients with FLT3/ITD positive and negative were also explored. As shown in Fig. S1a, FLT3/ITD positive was significantly associated with inferior EFS (5-year EFS = 33.5 ± 4.0% vs 49.7 ± 1.9% for FLT3/ITD-negative; P < 0.001). Moreover, the FLT3/ITD positive group had worse 5-year OS (51.5 ± 4.3%) than the FLT3/ITD-negative group (65.0 ± 1.8%; P = 0.003) (Fig. S1b).
Given the overlap between WT1 and FLT3/ITD status, subset analysis was performed to assess the relative influence of WT1 and FLT3/ITD on the prognosis of children with AML (Fig. 2a, b; Table 2). In the FLT3/ITD-positive subgroup, WT1-mutated patients had an extremely dismal prognosis (5-year EFS = 12.5 ± 6.5% vs 38.4 ± 4.5% for WT1 wild-type patients, HR: 2.179 [1.364–3.482], P = 0.001; 5-year OS = 27.5 ± 8.8% vs 57.0 ± 4.7% for WT1 wild-type patients, HR: 2.225[1.305–3.796], P = 0.003). When restricted to the FLT3/ITD-negative subgroup, WT1 mutations had an adverse impact on 5-year EFS (HR: 1.861[1.197–2.892], P = 0.006) instead of 5-year OS (HR: 1.600[0.933–2.744], P = 0.088). Similarly, for the WT1 wild-type patients, FLT3/ITD positive had reduced 5-year EFS (HR: 1.386[1.075–1.788], P = 0.012) but not 5-year OS (HR: 1.305[0.961–1.771], P = 0.088). However, FLT3/ITD mutations had no significantly negative influence on the outcome of WT1-mutated patients (EFS HR: 1.605[0.886–2.906], P = 0.118; OS HR: 1.748[0.870–3.514], P = 0.117).
Table 2
Statistical comparison of survival data according to both WT1 and FLT3/ITD status
Comparison
|
EFS hazard ratio (95% CI)
|
EFS
P-value
|
OS hazard ratio
(95% CI)
|
OS
P-value
|
FLT3/ITD(-):
WT1 wildtype vs WT1 mutant
|
1.861(1.197–2.892)
|
0.006
|
1.600(0.933–2.744)
|
0.088
|
FLT3/ITD(+):
WT1 wildtype vs WT1 mutant
|
2.179(1.364–3.482) |
0.001 |
2.225(1.305–3.796)
|
0.003 |
WT1 wildtype:
FLT3/ITD(-)vs FLT3/ITD(+)
|
1.386(1.075–1.788) |
0.012 |
1.305(0.961–1.771) |
0.088 |
WT1 mutant:
FLT3/ITD(-) vs FLT3/ITD(+)
|
1.605(0.886–2.906) |
0.118 |
1.748(0.870–3.514) |
0.117 |
CI confidence interval, EFS event-free survival, FLT3/ITD internal tandem duplication of the FLT3 gene, OS overall survival. |
Similar results were found in the subgroup of cytogenetically normal AML patients according to the combined WT1 and FLT3/ITD status (Fig. S2). Of note, the survival cures showed that there were no significant differences between WT1-mutated patients with FLT3/ITD-positive (n = 17) and FLT3/ITD negative (n = 6), in terms of 5-year EFS (14.1 ± 9.0% vs 16.7 ± 15.2%; P = 0.584) and OS (34.5 ± 12.3% vs 33.3 ± 19.2%; P = 0.665).
The effect of SCT in patients with WT1 mutations
As shown in Table 1, there was no significant difference on the proportion of HSCT in WT1-mutated group and WT1 wild-type group (15.6% vs 16.2%, P = 0.906). The survival analysis, after HSCT stratification, showed that for WT1-mutated pediatric patients, HSCT conferred a favorable prognostic impact on the trend of better 5-year EFS (42.9 ± 18.7% vs 22.3 ± 7.0% for chemotherapy-only; P = 0.316) and OS (57.1 ± 18.7% vs 43.6 ± 8.2% for chemotherapy-only; P = 0.483) (Fig. 3a, b).
To further evaluate the role of HSCT in patient with co-occurring WT1 and FLT3/ITD mutations, we explored the impact of HSCT on those patients. As shown in Fig. 3c, d, for AML patients with both WT1 mutations and FLT3/ITD positive, 5-year EFS (33.3 ± 19.2%) and OS (50.0 ± 20.4%) were higher in children with HSCT than those with chemotherapy-only (EFS: 0.0 ± 0.0%, P = 0.152; OS: 17.3 ± 11.1%, P = 0.205), respectively, although the differences between the two groups were not statistically significant.
Multivariate analysis of prognostic factors
Cox regression analyses were then performed to evaluate WT1 mutation status as a predictor of EFS and OS alongside other prognostic factors: age (utilizing 10 years of age as the cutoff value), white blood cell count at diagnosis (utilizing 50 × 10 9 /L as the cutoff value), high risk, standard risk, and HSCT. We identified WT1 mutations as an independent prognostic factor for both EFS and OS in pediatric patients with AML (Table 3). WT1 mutations were significantly associated with inferior EFS (HR: 1.910, 95% CI: 1.297–2.812, P = 0.001) and OS (HR: 1.709, 95% CI: 1.090–2.679, P = 0.020). In addition, age older than 10 years, white blood cell count greater than 50 × 109/L at first diagnosis, high-risk and standard-risk were significantly related to poor EFS and OS, while HSCT was related to better survival prognosis (HR: 0.431, 95% CI: 0.313–0.593, P < 0.001) and OS (HR: 0.594, 95% CI: 0.419–0.843, P = 0.004).
Table 3
Cox regression analysis of WT1 mutations and other prognostic factors
Outcome
|
Variable
|
Hazard ratio (95% CI)
|
P-value
|
EFS
|
WT1
High risk
Standard risk
HSCT
Age > 10 years
WBC > 50 × 109/L
|
1.910(1.297–2.812)
3.136(2.235-4.400)
2.581(2.207–3.286)
0.431(0.313–0.593)
1.300(1.053–1.607)
1.499(1.220–1.841)
|
0.001
< 0.001
< 0.001
<0.001
0.015
<0.001
|
OS
|
WT1
High risk
Standard risk
HSCT
Age > 10 years
WBC > 50 × 109/L
|
1.709(1.090–2.679)
3.991(2.653–6.004)
3.413(2.494–4.670)
0.594(0.419–0.843)
1.496(1.158–1.933)
1.307(1.018–1.677)
|
0.020
<0.001
<0.001
0.004
0.002
0.036
|
CI confidence interval, EFS event-free survival, HSCT hematopoietic stem cell transplantation, OS overall survival, WBC white blood cell count. |