1. Catalase-deficient mice induce aging phenotype faster than WT mice
It has been well-documented that increased ROS and diminished antioxidant capacity induce cellular senescence, and catalase enzymes have been used to alleviate senescence through its antioxidant defense mechanism [6, 8, 15]. We investigated whether catalase is used to alleviate ROS and diminish aging in catalase-deficient mice. For this, WT and catalase-KO mouse embryonic fibroblasts (MEFs) were isolated and cultured. Catalase deficiency was confirmed by immunoblot analysis of MEFs (Fig. S1a). KO MEFs displayed flattened and enlarged senescence phenotypic morphology at early passage (P2) and showed increased senescence phenotypic morphology with increasing passage (P4) (Fig. S1a,b). To determine whether the flattened and enlarged MEFs were senescent, β-galactosidase staining was performed. As expected, KO MEFs showed positive staining for senescence-associated β-galactosidase, which significantly increased in P5 but not in WT cells (Fig. 1b and S1c). To illustrate the senescence-induced phenotype, immunoblot analysis was performed for WT and KO MEFs from P2 and P5. Notably, the expression levels of senescence-related proteins p21 and p16 increased in KO P5 MEFs (Fig. 1c). Furthermore, to confirm the aging phenotype, catalase-KO mice with WT littermates at the age of 9 weeks (9W) and 53 weeks (53W) were subjected to the experiment. β-galactosidase staining was performed in the liver of mice, which showed positive staining in KO mice livers at 53W (Fig. 1d). Immunoblot analysis of liver homogenates from mice showed the induction of senescence-related proteins in KO mice at 53W (Fig. 1e). Together, these data suggest that catalase deficiency induces an aging phenotype faster than WT mice.
2. Catalase-deficient mice induce ROS through mitochondria and peroxisome
As reported earlier, ROS generation is the main cause of aging due to decreased cellular antioxidant capacity [6, 8, 15]. We hypothesized that ROS generation may be increased in catalase-KO mice. As expected, the fluorescence intensity measured by 2′7′-dichlorofluorescein diacetate (DCFH-DA) staining showed an increase in catalase-deficient MEFs at P5 (Fig. 2a). The fluorescent signal of DCFH-DA staining, representing ROS, was quantified and showed that ROS generation was significantly higher in catalase-KO cells at P5 (Fig. 2a). Likewise, we examined the expression of another ROS marker, 4 hydroxynonenal (4-HNE), in MEFs by immunofluorescence staining (IF). Consistent with DCFH-DA staining, the fluorescence intensity of 4-HNE in KO MEFs increased at P5 (Fig. 2b). In addition, to confirm ROS generation in vivo, intracellular ROS levels were measured in liver lysates of mice. Total ROS levels increased significantly in KO mice at 53W (Fig. 2c). The endogenous source of ROS contains different cellular locations, with mitochondria and peroxisomes being the major sites [2, 16, 17]. The principal source of ROS produced by mitochondria is the superoxide anion, a byproduct of the electron transport chain responsible for oxidative damage by aerobic energy metabolism [18, 19]. To detect mitochondrial ROS, MitoSOX red, a mitochondrial superoxide indicator, was used in WT and KO MEFs at the P2 and P5 levels (Fig. 2d). Catalase-KO cells at P5 showed increased levels of the red fluorescence signal. In addition, in vivo, the level of ACOX1 (acyl-CoA oxidase 1), a major producer of ROS in the peroxisome and the first and rate-limiting enzyme in fatty acid β-oxidation, increased significantly in KO mice at 53W (Fig. 2e). To confirm the induction of ROS in catalase-KO mice, MEFs were treated with the antioxidant N-acetyl-L-cysteine (NAC). Treatment with NAC, however, inhibited the level of ROS generation in KO MEFs at P5 (Fig. 2a, b, and d). Taken together, these data suggest that catalase-KO mice induce ROS production through both mitochondria and peroxisomes.
We hypothesized that ROS generation in catalase-KO mice may induce cellular senescence, as previously described [6, 8, 15]. Hence, β-galactosidase staining was again performed in WT and catalase-KO MEFs and co-treated with NAC (Fig. 2f). As expected, positive staining of senescence-associated β-galactosidase in KO MEFs was significantly diminished by treatment with NAC. Moreover, NAC treatment also decreased senescence-related protein in KO P5 MEFs (Fig. 2g). Together, these data suggest that catalase deficiency induces an aging phenotype through ROS generation.
3. Catalase-deficient aged mice induce leaky lysosome
Lysosomes are the main catabolic organelles that play an essential role in cellular processes, including responses to nutrient availability, stress resistance, plasma membrane repair and development, and cellular differentiation [20]. In line with catabolic organelles, lysosomal activity is strongly influenced by aging by altering the physical and chemical properties of these organelles and rendering them more sensitive to stress [12]. Considering this notion, immunoblot analysis of mice liver homogenates was performed to check the lysosomal marker protein LAMP1 (Fig. 3a). Lysosomal protein levels increased in the KO liver. Aging has also been reported to increase lysosomal volume [21]. Hence, to check the volume, the morphology of lysosomes was analyzed using IF. WT and KO MEFs were immunostained with the lysosomal marker LAMP1 (Fig. 3b). Catalase-deficient MEFs at the P5 level showed an enlarged cellular size, which significantly increased the red fluorescence signal toward the cytoplasm of the cell. To confirm acidic lysosomal vesicles, MEFs were immunostained with lysotracker for labeling and tracking of the acidotropic probe for lysosomes (Fig. 3c). The acidic vesicle specifically accumulating in lysosomes decreased, whereas cell size increased in KO MEFs at the P5 level. Although KO MEFs showed increased lysosome size, their acidic vesicles decreased by lysotracker (Fig. 3a–c). Lysosomal activity is highly influenced by hydrolytic enzymes residing in the lumen of the lysosomal membrane, which is highly acidic [24]. As the acidotropic probe for lysosomes decreased in KO MEFs, we assumed that the resident hydrolytic enzymes in the lysosomal lumen were leaked. Hence, leaky lysosomal content may make the hydrolytic enzyme alkaline, causing lysosomes to fuse in the cytosol, which may increase lysosomal size. To check the lysosomal content, we analyzed the protein levels of cathepsin D (cathD) and cathepsin B (cathB), two major lysosomal hydrolases that can serve as molecular reporters for lysosomal functions [25], in WT and KO liver homogenates. Both lysosomal hydrolases were accumulated in the supernatant fraction in KO mice at 53W, whereas both cath D and B were normal in the pellet fraction in the other groups (Fig. 3d). Furthermore, cath D activity was measured in the liver lysates of mice (Fig. 3e). cath D activity decreased in KO mice at 53W, which further confirmed the presence of leaky lysosomes in KO aged mice. Together, these data suggest that catalase deficiency induces lysosomal damage through leaky lysosomes.
4. Leaky lysosome persuades alteration of autophagy through ROS in catalase-deficient aged mice
Damaged lysosomes are selectively sequestered by autophagy [24]. Hence, we hypothesized that damaged lysosomes in KO mice may be recruited by autophagy machinery, which are then engulfed by autophagosomes. To confirm the autophagic process, MEFs were co-immunostained with LC3, an autophagy marker, with lysotracker (Fig. 4a). In contrast to our assumption, the LC3 positive puncta increased but were not fused with lysosomes in KO MEFs due to decreased lysosomal acidic probe, which showed less fusion of autophagosomes with lysosomes. Further, immunoblot analysis was performed in WT and KO MEFs at the P2 and P5 levels. Notably, the expression levels of autophagy substrate marker P62 and autophagosome by LC3II were significantly increased in KO MEFs at P5 (Fig. 4b). To confirm autophagic dysregulation in vivo, liver tissues from mice were immunoblotted with an autophagy marker (Fig. 4c). Consistent with MEFs, liver tissues from KO mice at 53W showed dysregulation of basal autophagy in comparison to WT and KO 9W livers (Fig. 4c). ROS mediate leaky lysosomes [25]. Hence, to confirm this, WT and catalase-KO MEFs were treated with or without NAC at both passages (P2 and P5). Treatment with NAC slightly recovered the acidic probe of lysosomes, which fused with autophagosomes in KO MEFs at the P5 level (Fig. 4a). Hence, these data suggest that leaky lysosomes alter autophagy through ROS in catalase-deficient aged mice.
5. Leaky lysosomes induce lipofuscin accumulation through ROS in catalase-deficient aged mice
Although leaky lysosomes are induced in catalase-deficient MEFs, the damaged lysosomes were not degraded through the autophagic process. Instead, basal autophagy was dysregulated in KO MEFs. To find the mechanistic evidence for this, we examined the morphology of the liver by H&E staining in mice. The liver morphology of 53W KO mice showed microvesicular steatosis (i.e., accumulation of small fat droplets) in the cytosol of hepatocytes (arrows), with golden-brown pigment (arrowhead), whereas the livers of WT and KO 9W mice showed normal lobular architecture with hepatocytes arranged in hepatic cords (Fig. 5a). To confirm the accumulation of fat droplets in hepatocytes, triacylglycerol (TG) was measured in the liver lysates of mice. Consistent with H&E staining, liver lysates of 53W KO mice showed a significant increase in liver TG compared to other groups (Fig. 5b). Furthermore, oil red O staining (ORO) also showed the induction of lipid droplets in the hepatocytes of 53W liver sections (Fig. 5c). During aging, the volume and structure of hepatocyte organelles change [26]. Although we observed a significant increase in body weight of 53W old KO mice, but there were no significant changes in liver weight (Fig. S2a–b). We hypothesized that the accumulation of small lipid droplets in the cytoplasm of hepatocytes in KO 53W old mice may be an undigested lipid, lipofuscin, which showed brown pigmentation on hepatocytes (Fig. 5a). Lipofuscin is a highly oxidized insoluble protein that fails to degrade damaged and denatured proteins [27]. Moreover, it is a chemically and morphologically polymorphous waste material that accumulates at the primary site of the lysosome and disturbs lysosomal degradation and causes lysosome leakage [28, 29]. To examine the accumulation of lipofuscin or leaky lysosomes, MEFs were co-immunostained with LGALS1 (galectin-1), a leaky lysosome marker with lysotracker (Fig. 5d). Catalase-KO MEFs at P5 level showed a significant increase in LGALS1 puncta that were loaded on the lysosomes (Fig. 5d, arrow); although acidic vesicles in lysosomes by lysotracker were less, almost all LGALS1 puncta were localized to lysosomes. In contrast, LGALS1 puncta were less or not observed at all in the WT at P2, P5, and KO P2 levels. It is known that enhanced ROS results in the leakage and accumulation of lipofuscin in lysosomes [25, 28]. Hence, to confirm this, WT and catalase-KO MEFs were treated with or without NAC at both passages (P2 and P5). Treatment with NAC slightly rescued the acidic vesicles of lysosomes and decreased the localization of LGALS1 puncta to the lysosomes in KO MEFs at P5 level (Fig. 5d). Hence, these data suggest that leaky lysosomes induce lipofuscin accumulation through ROS in catalase-KO aged mice.
6. Leaky lysosome affects lysosomal pH that activates mTORC1 (mechanistic target of rapamycin complex 1) and leads to cellular senescence
Next, we constructed leaky lysosomes using the well-known lysosomal membrane permeabilization (LMP) marker L-leucyl-L-leucine methyl ester (LLOME) in hepatoma cells and questioned whether leaky lysosomes induce ROS and cellular senescence. For this, we treated HepG2 cells with LMP inducer LLOME for 24 h and examined the morphology of lysosomes by immunostaining with lysotracker. As expected, the specific accumulation of acidic vesicles in lysosomes decreased in LLOME-treated cells (Fig. 6a). The disruption of acidic hydrolases in lysosomes or leaky lysosomes is induced through extensive ROS [25]. To confirm this, HepG2 cells were stained with DCFH-DA (Fig. 6b). Fluorescence intensity by DCFH-DA staining increased in LLOME-treated cells. Hence, to confirm the leaky lysosomes induced by ROS accumulation, HepG2 cells were co-treated with antioxidant NAC and LLOME. As expected, NAC recovered the acidic vesicles of lysosomes and abolished DCFH-DA fluorescence intensity in HepG2 cells (Fig. 6a–b). LLOME treatment increased the cytosolic release of lysosomal hydrolases [24]. Hence, to check the lysosomal content, the protein levels of cath D and B were immunoblotted in HepG2 cells treated with LLOME (Fig. 6c). As expected, both lysosomal hydrolases (cath D and B) accumulated in the supernatant fraction in LLOME-treated cells, whereas they were normal in the pellet fraction of untreated cells. Further immunoblot analysis of HepG2 cells showed increased protein expression of the ROS marker 4-HNE and peroxisomal oxidase ACOX1 in LLOME-treated cells (Fig. S3a). However, we did not observe any changes in mitochondrial enzymes, including COX1, COX4, voltage-dependent anion channel (VDAC), and antioxidant proteins, including SOD1 and SOD2.
The link between decreased lysosomal function and aging has been well studied [12, 30]. Hence, we investigated whether LMP drug LLOME induces cellular senescence in cells. β-galactosidase staining was performed in HepG2 cells. As expected, cells treated with LLOME showed positive staining for senescence-associated β-galactosidase (Fig. S3b). However, treatment with NAC abolished the positive staining of senescence-associated β-galactosidase. Further immunoblot analysis was performed in HepG2 cells showing increased expression of aging-related proteins, including p16 and p21, in LLOME-treated cells (Fig. S3c). During lysosomal damage, transcription factor EB (TFEB), a major regulator of autophagy and lysosomal biogenesis, has been shown to rapidly translocate to the nucleus and activate the transcription of its target gene for the activation of lysosomes [31]. Hence, immunostaining was performed for translocation of TFEB to HepG2 cells. As expected, LLOME-treated cells showed translocation of TFEB to the nucleus in LLOME-treated cells (Fig. 6d). Hence, lysosomal rupture induces the biogenesis of lysosomes through autophagy (Fig. S3d), as previously described [24, 31]. Meanwhile, immunoblot analysis also showed that treatment with LLOME increased the expression of phosphorylated S6 (pS6), a marker of downregulation of mTORC1 (Fig. 6e). Further immunostaining with anti-mTORC1was performed in LLOME-treated cells, which showed increased expression of mTORC1 protein (Fig. S3e). Together, these data show that leaky lysosomes affect lysosomes and induce cellular senescence probably through mTORC1 activation.
7. Rapamycin attenuated cellular senescence induced by catalase-deficient cells
mTOR is a key component of cellular metabolism that promotes cell growth and proliferation via nutrient sensing. In addition to cellular growth and proliferation, mTOR has also been associated as a lifespan regulator in mice [32–35]. The lifespan-enhancing effects of mTOR inhibitors have been linked to mTORC1 inhibition [36]. Hence, we treated cells with rapamycin, an mTORC1 inhibitor, to reverse cellular senescence induced by catalase-KO mice. For this, WT and KO MEFs were treated with rapamycin, and β-galactosidase staining was performed to check the senescence phenotype. KO MEFs displayed flattened and enlarged senescence phenotypic morphology at early passage (P2) and showed increased senescence phenotypic morphology with increasing passage (P5) in addition to positive staining for senescence-associated β-galactosidase, but not in WT MEFs (Fig. 7a). However, treatment with rapamycin inhibited positive staining of senescence-associated β-galactosidase, but KO MEFs still displayed flattened and enlarged senescence phenotypic morphology. Further immunoblot analysis of MEFs showed the induction of senescence-related proteins in KO cells that was suppressed by co-treatment with rapamycin (Fig. 7b). mTORC1 is also known to suppress autophagy, and activation of autophagy by suppression of mTORC1 can slow age by clearing the accumulating old and dysfunctional organelles [36, 37]. Hence, to check the clearance of old and dysfunctional organelles by autophagy, rapamycin was used to treat MEFs, and immunoblot analysis was performed. Remarkably, the increased levels of autophagy substrate marker P62 and autophagosome marker LC3II were significantly decreased by rapamycin in KO MEFs at P5 level (Fig. 7c). Furthermore, phosphorylated S6, downstream of mTORC1 activity was decreased by rapamycin, suggesting that autophagy was initiated (Fig. 7c). In addition, accumulation of lysosomal content, such as cath D, in the supernatant fraction in KO MEFs at level P5 was suppressed by rapamycin (Fig. 7d). Similarly, cath D activity was also recovered in KO MEF following treatment with rapamycin (Fig. 7e). Additionally, we immunostained MEFs with lysotracker to measure the acidic probe of lysosomes by rapamycin. As expected, the decreased acidic puncta of lysosomes were recovered by rapamycin in KO MEFs at P5 (Fig. 7f). Taken together, we showed that mTORC1 depletion by rapamycin slightly attenuated the progression of aging in catalase-KO mice. We also tried to show aging progression by hyperactivation of mTOR by the point mutation S2215Y, identified in the human cancer genome database [38]. We transfected the FLAG-tagged mutated form of mTOR with its WT plasmid in MEFs, followed by immunostaining with lysotracker (Fig. S4). Consistent with the aged phenotype, the mutated form showed a diffuse form of lysotracker, whereas in WT cells, lysotracker puncta were quite distinctive. Together, these data showed that mTOR hyperactivation in catalase-KO mice may aggravate the aging phenotype faster than in WT mice.