Animals
This study was approved by the ethics committee at Karolinska Institutet, Stockholms norra djurförsöksetiska nämnd (approval number: N94/15 and N126/16) and carried out in accordance with the relevant guidelines and regulations (Swedish Animal Welfare Act 1988:543) and the ARRIVE guidelines for animal experiments. We obtained Cx3cr1EYFP − CreER mice, which express a Cre-ERT2 fusion protein and enhanced yellow fluorescent protein (EYFP), and Rosa26DTA+/− mice, which carry a loxP-flanked stop cassette associated with an attenuated diphtheria toxin, originally from Jackson Laboratory, as previously reported [34]. Crossbreeding by these two strains generated Cx3cr1CreER − EYFP+/Rosa26DTA+/− mice (DTA + mice; microglia-depleted mice) and Cx3cr1 CreER−EYFP+/Rosa26DTA−/− mice (DTA- mice; control mice) (Fig. 1a). All mice were housed in a humidity-controlled room with a 12-h light–dark cycle and ad libitum access to food and water.
Tamoxifen administration
Tamoxifen was purchased from Sigma-Aldrich (Cat. #T5648) and dissolved in corn oil (8 mg tamoxifen/1 ml corn oil) at 70 °C. It was administered at P8 and P9 via intraperitoneal injection (50 mg/kg).
Induction of hypoxic–ischemic encephalopathy
Induction of HIE was performed without knowledge of the genotype. Unilateral HI was induced at P10 using the modified Rice-Vannucci model [40, 41]. After sedation with isoflurane (4% for induction and 2% for maintenance), and local anesthesia with Marcaine (Astra Zeneca), the left common carotid artery was isolated and occluded by 8-Watt electronic coagulation (Additional file 1; Figure S1). The skin incision was sutured with 6 − 0 silk surgical thread and infiltrated with additional local anesthesia. All mice were subjected to ischemic surgery within less than 5 min. Pups were returned to the dam for 1 h and then placed in a hypoxic chamber (BioSpherix, US) with 10% O2 in 90% N2 for 1 h. In the sham group, the carotid artery was isolated but not cauterized. For injury evaluation, 40 pups were subjected to the HI insult. For cytokine analysis, 64 of 105 pups were randomly selected to be subjected to the HI insult; therefore, the sham group had 41 pups.
Immunohistochemistry
Mice were anesthetized by injection of 50 mg/kg pentobarbital (APL, Sweden) and perfused transcardially with phosphate-buffered saline (PBS) followed by 4% paraformaldehyde (PFA) at P10, P13, P17, and P24 for a repopulation study and at P13 after HI for evaluation of infarction size. Removed brains were fixed in 4% PFA for 24 h. Fixed brains were dehydrated and embedded in a paraffin block and sectioned coronally at 5 µm by a sliding microtome. Six levels of each brain were collected based on previous studies [18, 42, 43]. The first level was obtained corresponding to the bregma 1.3 mm in the adult mouse brain, and every 100th section was collected and deparaffinized. After deparaffinization, antigen retrieval was performed in 10 mM citric buffer (pH 6.0) for 10 min. After blocking, sections were exposed to primary antibodies in a humidity chamber box overnight at 4 °C. The primary antibodies were those against rabbit Iba-1 from Wako (#1919741) diluted 1:1000, mouse microtubule-associated protein-2 (MAP2) from Sigma (#M4403) diluted 1:1000 and rabbit anti glial fibrillary acidic protein (GFAP) from Millipore diluted 1:500 (AB5804). After washing, biotin-conjugated donkey anti-rabbit secondary antibody (Jackson Immuno Research) diluted 1:1000 was applied for Iba-1. For MAP-2, VECTOR M.O.M.™ Immunodetection Kit was used. After blocking endogenous peroxidase using 0.3% H2O2, sections were visualized by VECTASTAIN Elite ABC-Peroxidase Kit and 3,3’-diaminobenzidine (DAB). For GFAP, biotinylated donkey anti rabbit secondary antibody was applied for 1 h before incubation with VECTASTAIN® Elite ABC-Peroxidase Kit. For immunofluorescence analyses, the following secondary antibodies were used: donkey anti-rabbit IgG Alexa Fluor 555 (1:1000). Coverslips were mounted onto slides using antifade reagent ProLong Gold (Molecular probes/Life technologies).
Iba-1 cell counting
Sections were observed using Zeiss Axio Imager M2 (Carl Zeiss, Göttingen, Germany). The number of microglia was measured by counting Iba-1-positive cells in the whole hemisphere. The total number of Iba-1+ cells was calculated using the fractionator option in Stereo Investigator software (MicroBrightField, Colchester, Vt., USA). Briefly, each section was divided equally into approximately 200 squares (400 × 400 µm, sampling grid), and the number of Iba-1+ cells with a complete cell body was counted in each 100 × 100 µm red-green square (counting frame) within the sampling grid using a 20x air objective. The software provided the estimated total number of cells and the area in the whole coronal section. Slides from DTA+ mice at P10, P13, and P17 showed few unevenly distributed microglial cells, hence all Iba-1+ cells were counted directly without the use of the fractionator. Based on these data, the density of Iba-1+ cells was calculated.
Fluorescence Activated Cell Sorting (FACS)
Mice were sacrificed by intraperitoneal injection of 50 mg/kg pentobarbital (APL, Sweden) and perfused transcardially with PBS. After 5 minutes of perfusion, brains were extracted, the olfactory bulbs and the cerebellum were removed, and the right and left hemispheres separated and processed individually. The tissue was then minced with a scalpel and digested for 30 min at 37 °C with Hank’s Balanced Salt Solution (HBSS) containing 0.02% DNase 1 (Sigma-Aldrich) and 0.005% collagenase (Sigma-Aldrich). The reaction was stopped with cold HBSS containing 0.01% ethylenediaminetetraacetic acid (EDTA) and the samples were strained and centrifuged at 4 °C (300 g, 10 min). The pellet was resuspended in 38% percoll solution and centrifuged at 4 °C (800 g, 10 min). After removing the supernatant carefully, the pellet was rinsed with PBS and transferred to a V-bottom plate for staining. The samples were incubated for 20 min at 4 °C with PBS containing CD11b (1:100, M1-70, BioLegend), CD45 (1:1000, 30-F11, BioLegend), and LIVE/DEAD™ Fixable Near-IR Dead Cell Stain Kit (Invitrogen), and then rinsed before analysis. Cell numbers were acquired using Gallios flow cytometer (Beckman Coulter) and analyzed using Kaluza software (Beckman Coulter).
Injury evaluation
Tissue loss was assessed by determining the MAP-2-stained area at P13 as described previously.[18, 42] First, the MAP-2-positive area was measured in each hemisphere separately by using Stereo Investigator software (MicroBrightField, USA). Second, the difference in areas was calculated by subtracting the staining area in the contralateral hemisphere minus that in the ipsilateral hemisphere. Next, total tissue loss volume was calculated according to the Cavalieri principle using the following formula: V = ΣA·P·T (where V is the total volume, ΣA is the sum of the areas measured, P is the inverse of the sampling fraction, and T is the section thickness). This evaluation was performed without knowledge of the genotype.
TUNEL and NeuN double staining
After deparaffinization, antigen retrieval was performed in 10 mM citric buffer (pH 6.0) for 15 min. Sections were incubated with 5% normal donkey serum and 0.3% Triton X-100 in PBS for 30 min at room temperature, and then with rabbit monoclonal anti-NeuN antibody (1:100, MABN140, Millipore Corpo, CA, USA) at 4 °C overnight. After washing out the primary antibody, donkey anti-rabbit Alexa Flour 488 (1:300, A-212206, Thermo Fisher Scientific) was applied for 2 hours at room temperature. Sections were rinsed with PBS, and the terminal deoxynucleotidyl transferase-dUTP nick end labeling (TUNEL) (Click-iT Plus TUNEL Assay Kit, C10618, Thermo Fisher Scientific Europe BV) assay was performed according to the manufacturer’s protocol. Stereological analysis was performed using Stereo Investigator software (MicroBrightField, USA). The number of TUNEL+ cells was counted under 200x magnification [44, 45]. First, the contour of each region (striatum, hippocampus, cortex, and thalamus) was traced using a 5x air objective. After setting the counting frame size to 150 × 150 µm and grid size to 150 × 150 µm, the number of TUNEL-positive cells was counted with a 20x air objective. Cell counting was performed by an investigator blinded to genotyping. Fluorescent images were obtained using a LSM700 laser scanning confocal microscope (Axio-observer Z1; Carl Zeiss microscopy, Germany), and analyzed using the software ZEN 2.3 (blue edition; Zeiss).
Genotyping
Genotyping was performed after sacrifice by using a piece of tissue, which was placed in 75 µl of extraction buffer containing 25 mM sodium hydroxide and 0.2 mM EDTA in distilled water and incubated at 98℃ for 60 min. Next, 75 µl of 40 mM trishydroxymethylaminomethane-hydrochloric acid (pH 5.0) was added and centrifuged at 6000 rpm for 3 minutes. The supernatant was collected for genotyping. For the polymerase chain reaction (PCR), 2 µl of cDNA was mixed into 0.25 µl of MyTaq™ HS DNA Polymerase, 10 µl of 5x MyTaq™ Reaction Buffer (Bioline meridian, London, UK), 3 µl of each of the corresponding primers (0.5 µM), and 34.75 µl of distilled water (total 50 µl). Each primer sequence is shown in additional file 2 (Table S1). The Cre allele was amplified using the following cycle conditions: 95 °C for 30 s, 61.5 °C for 30 s, and 72 °C for 60 s. The cycle was repeated 30 times. For DTA allele, the cycle was 94 °C for 30 s, 60 °C for 60 s, and 72 °C for 60 s. The cycle was repeated 35 times. PCR products were separated on 1% agarose gel and stained with GelRed® Nucleic Acid Gel Stain (Biotium, Inc. Fremont, CA, USA).
Quantitative polymerase chain reaction (PCR)
Total RNA was isolated from the ipsilateral hemisphere after HI by using the RNeasy Kit (QIAGEN) and was measured using a Nano Drop (Thermo Scientific). The nucleotide ratio (A260:A280) of all samples were within the range 1.9–2.1. A total of 1 µg of extracted RNA was underwent reverse transcription into cDNA using the iScript cDNA synthesis kit (Bio-Rad, Hercules, CA, USA) following the manufacturer’s protocol. Quantitative PCR (qPCR) was performed using the Step-One-Plus Real Time PCR machine (Applied Biosystems) using Power SYBR Green PCR Master Mix (Applied Biosystems) and primers described in additional file 3 (Table S2). The set-up condition was initial denaturation step at 95 °C for 5 min, denaturation at 95 °C for 5 s, annealing at 60 °C for 10 s, and elongation for 30 s. The total number of cycles was 40. The cycle time values were normalized to β-actin of the same sample. The mRNA expression levels were calculated using the delta-delta CT method as fold changes in comparison with DTA− sham samples at P13, and all samples were examined in triplicate. These analyses were performed using StepOne software program (version 2.3, Applied Biosystems).
Quantitative enzyme-linked immunosorbent assay
Ipsilateral hemispheres were collected from pups at P13 after HI at P10. Tissue was homogenized in N-PER™ Neuronal Protein Extraction Reagent (Thermo Fisher) with cOmplete™, Mini, EDTA-free Protease Inhibitor Cocktail (Sigma-Aldrich) using pellet pestles, blue polypropylene (Sigma-Aldrich) on ice. After 1-h agitation at 4 °C, lysates were centrifuged 14000 rpm for 10 min. The protein concentration of the supernatant was measured by Pierce BCA Protein Assay kit (Thermo Scientific) according to the manufacturer’s protocol. Aliquots of lysates were stored at -80 °C until further analysis. After all samples were prepared, the IL-10 and TGF-β contents in the lysates were measured using Mouse IL-10 Quantikine ELISA Kit (R&D system) and Mouse/Rat/Porcine/Canine TGF-beta 1 Quantikine ELISA Kit (R&D system). For TGF-β assessments, samples were treated with 1N HCL to activate the latent TGF-β before measurement using ELISA kit. The optical density was determined at 450 nm using a microplate reader (FLUOstar Omega, BMG LABTECH, Germany) within 15 min after the reactions were stopped. All measurements were performed in duplicate.
Statistical analysis
Values are presented as mean ± SEM. Statistical analysis was performed using GraphPad Prism ver.7 (GraphPad Software, Inc., San Diego, CA, USA). One-way ANOVA was used for comparison of multiple samples followed by Sidak test to determine the statistical significance. Whenever normal distribution was not found, statistical significance was analyzed using nonparametric tests (Dunn’s multiple comparison test). Statistical significance was defined at p < 0.05 in all cases.