1. hDPSC isolation, culture, and identification
Third molars without periodontitis or caries from healthy human donors (aged 18–24 years) were extracted and collected at the Department of Oral and Maxillofacial Surgery, Nanfang Hospital, Guangzhou, China. This study was approved by the Ethics Committee of Nanfang Hospital, Southern Medical University. Informed consent was obtained from each patient. Pulp tissues were digested to isolate hDPSCs[14, 15]. Subsequently, the hDPSCs were cultured in Dulbecco’s modified Eagle’s medium (DMEM; Gibco, Grand Island, NY, USA) supplemented with 10% fetal bovine serum (FBS; Gibco, Grand Island, NY, USA), 100 U/mL penicillin, and 100 mg/mL streptomycin (HyClone, NY, USA), in a 5% CO2 atmosphere at 37 °C. Flow cytometry (Becton Dickinson, Tokyo, Japan) was conducted to identify stem cell surface markers. Passage 3 hDPSCs were suspended at a final density of 5 × 105 cells/ml and incubated with conjugated human antibodies, including CD29-PE, CD90-PE, CD34-PE, CD45-FITC, CD44-FITC, and CD90-FICT (BD Pharmingen, Franklin Lakes, NJ) in the dark for 1 hour at 4 °C. After washing with phosphate-buffered saline (PBS; Corning, NY, USA), the cells were subjected to flow cytometric analysis.
2. Multilineage differentiation assay
Osteogenic and adipogenic induction were performed to determine the multilineage differentiation potential of the hDPSCs. Passage 3 hDPSCs were cultured in 6-well plates for 14 days. In the osteogenic induction group, 100 nM dexamethasone, 10 mmol/L β-glycerophosphate, and 50 mg/mL ascorbic acid (Sigma, St Louis, MO, USA) were added to the culture medium, and the mineralized nodules were stained with 2% Alizarin red S (Alizarin Red S A5533, Sigma-Aldrich). In the adipogenic differentiation group, 1 mmol/L dexamethasone, 0.05 mmol/L methyl isobutyl xanthine, 10 mg/mL insulin, and 200 mmol/L indomethacin (Sigma, St Louis, MO, USA), were added to the culture medium, and the lipid droplets were visualized by oil red O staining following a standard protocol.
3. cell viability assay
The hDPSCs were seeded in 96-well plates at a density of 2 × 103 cells/well and were stimulated with different concentrations of LPS (Sorlarbio, Beijing, China; 0, 1, 5, 10 and 50 µg/mL) for 2 days. Ten microliters of Cell counting kit-8 reagent (CCK-8; Beyotime Biotechnology, Shanghai, China) was added to each well. After 2 hours of incubation in the dark, the absorbance was measured at a wavelength of 490 nm using a microplate reader (BioTEK, Swindon, UK). Triplicate repeats were used in this assay.
4. Exosome-free serum preparation and exosome collection
Fetal bovine serum was diluted in DMEM to 20%. Overnight ultracentrifugation at 100,000 g was performed to eliminate the serum-derived exosomes[16]. After reaching 70% confluence, hDPSCs (passages 3 to 5) were cultured in DMEM containing 10% exosome-free bovine serum and 1% penicillin-streptomycin with or without 5 µg/mL LPS for 2 days. The culture medium was collected for exosome purification by programmed centrifugation. The culture medium was centrifuged at 300 × g for 10 min, and the supernatant was harvested for another centrifugation at 2,000 × g for 10 min. To remove the extracellular vesicles and apoptotic bodies, the supernatants from the previous step were collected and centrifuged at 10,000 × g for 30 min. To purify the exosomes, the supernatants were ultracentrifuged (Optima XPN-100, Beckman Coulter, USA) at 100,000 × g for 70 min. The sedimentary pellet was resuspended in phosphate-buffered saline (PBS) and then ultracentrifuged at 100,000 × g for another 70 min. The exosome pellet was resuspended in 20 µL PBS and stored at -80℃.
5. Exosome identification and BCA protein assay
The protein concentration of the exosomes was quantified with a micro BCA Protein Assay Kit (Thermo Fisher, USA). Transmission electron microscopy (TEM) was used to identify the exosome morphology. The exosomes were pipetted onto formvar/carbon-coated TEM grids at room temperature. After staining with 4% uranyl acetate, images of the exosomes were captured by TEM (JEM-1400 PLUS,Tokyo, JAPAN). The particle diameter was determined by Nanoparticle Tracking assay (NTA) with a Nanosight NS300 (Malvern, Worcestershire, UK). The exosomal surface markers CD9, CD63 and heat shock protein 70 (HSP70; System Biosciences, PA, USA) were examined using automated Western blotting.
6. Exosome endocytosis assay
PKH67 (0.4 µL, Sigma-Aldrich, St Louis, MO) was added to 200 µL Diluent C and incubated with 20 µL exosomes for 2 min at room temperature. Then, 200 µL exosome-free FBS was added to terminate the reaction. The exosomes were washed in PBS and ultracentrifuged at 100,000 × g for 70 min. HUVECs were cultured in an endothelial growth medium-2 bullet kit (EGM-2; Lonza CC-3162, MD, USA) at 37 °C with 5% CO2. PKH67-labeled exosomes were added and incubated for 4 hours at 37 °C. The HUVECs were fixed with 4% paraformaldehyde for 20 min. Antifade Mounting Medium with 4',6-diamidino-2-phenylindole (DAPI; Beyotime Biotechnology, Shanghai, China) was used for nuclear staining. The images of exosome endocytosis by HUVECs were captured with an electric inverted microscope (Olympus, Tokyo, Japan).
7. Tube formation assay for angiogenesis
HUVECs were pretreated with exosomes derived from hDPSCs (hDPSC-EXOs) or exosomes derived from LPS-stimulated hDPSCs (LPS-hDPSC-EXOs) (100 µg/mL) for 24 hours. An equal volume of PBS was added to the control group. HUVECs were resuspended, seeded onto Matrigel (150 µL) (BD Biosciences, San Jose, CA)-precoated 48-well plates at a density of 105 cells/well, and incubated at 37 °C for 1 to 9 hours. Exosomes or PBS was added to each well. Images of tube formation were obtained with microscope. The indexes of tube formation were analyzed by ImageJ software.
8. Migration assay
A scratch wound healing assay was used to estimate the migration ability of HUVECs in response to hDPSC-EXOs or LPS-hDPSC-EXOs. HUVECs were seeded in 12-well plates at a density of 1 × 105 cells/well. After reaching 80% confluence, a scratch was made with a sterile pipette tip in each well. After washing with PBS, the HUVECs were exposed to fresh culture medium with hDPSC-EXOs or LPS-hDPSC-EXOs (100 µg/mL). An equal volume of PBS was added to the control group. Images of scratches were captured at 0 hours, 12 hours, and 24 hours.
9. MicroRNA sequencing
A total of 3 µg RNA was extracted from each exosome sample and sent to Novogene Co., Ltd. (Beijing, China) for the construction of a small RNA library. After cluster generation, the libraries were sequenced on an Illumina HiSeq 2500 platform (Illumina, CA, USA), and 50-bp single-end reads were generated. A P-value of 0.05 was set as the threshold for significant differential expression by default. Differentially expressed microRNAs were analyzed. The microRNA target genes were predicted by two bioinformatics tools (miRanda and RNAhybrid). Gene Ontology (GO; http://geneontology.org/) enrichment analysis was used to define gene attributes in organisms from three fields: biological processes (BP), cellular components (CC), and molecular functions (MF). (P < 0.05 was used). KOBAS software was used to test the statistical enrichment of the target gene candidates in the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway database (KEGG; https://www.genome.jp/kegg/pathway.html)
10. Quantitative reverse-transcription polymerase chain reaction (qRT-PCR)
mRNA and microRNA were extracted from cells or exosomes by the RNA Isolater Total RNA Extraction Reagent (Vazyme Biotech Co., Ltd, Nanjing, China). Total RNA was reverse transcribed into cDNA using a HiScript II 1st Strand cDNA Synthesis Kit (Vazyme Biotech Co., Ltd, Nanjing, China) or a miDETECT A Track miRNA qRT-PCR Starter Kit (RiboBio Ltd., Guangzhou, China). qRT-PCR was performed by the SYBR-Green PCR kit (Vazyme Biotech Co., Ltd, Nanjing, China) according to the manufacturer’s instructions on a QuantStudio5 system (Thermo Fisher Scientific, Waltham, MA, USA). U6 and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were used as the internal controls for microRNA and mRNA, respectively. The primers for miRNAs were designed by RiboBio Corporation (Guangzhou, China). The sequences of the mRNA primers are listed below. VEGF: forward, 5’-gggcagaatcatcacgaagt-3’, and reverse 5’-tggtgatgttggactcctca-3’. Kinase-insert domain-containing receptor (KDR): forward, 5’-gtgaccaacatggagtcgtg-3’, and reverse 5’-tgcttcacagaagaccatgc-3’. Angiopoietin 1 (Ang-1): forward, 5’-gaagggaaccgagcctattc-3’, and reverse 5’-gggcacatttgcacatacag-3’. Thrombospondin 1 (THBS): forward, 5’-aggcatgttccagtttcacc-3’, and reverse 5’-gctggcaccacctttattgt-3’. Interleukin-6 (IL-6): forward, 5’-aggagacttgcctggtgaaa-3’, and reverse 5’-caggggtggttattgcatct-3’. Tumor necrosis factor alpha (TNF-α): forward, 5’-ctatctgggaggggtcttcc-3’, and reverse 5’-ggttgagggtgtctgaagga-3’. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH): forward, 5’-cgaccactttgtcaagctca-3’, and reverse 5’-aggggtctacatggcaactg-3’.
11. Statistical analysis
Each experiment was repeated in triplicate. All the values are presented as the mean ± SD and were analyzed in SPSS 19.0 (SPSS Inc., USA). A paired t-test was used for two-group comparisons. One-way analysis of variance (ANOVA) followed by Dunnett's T3 was used for multiple group comparisons. p < 0.05 was regarded as statistically significant.