Cell culture and reagent
The human NSCLC cell line A549 was obtained from the Cell Bank of the Chinese Academy of Sciences (Shanghai, China). Cells were maintained in RPMI-1640 medium (keygentec, China) containing 10% Fetal bovine serum (Cellsera, Australia), incubated at 37 °C in an environment of 5% CO2 and 95% humidity. Ferrostatin-1 (MCE, USA), the first specific inhibitor of ferroptosis with obvious inhibition effect and great specificity, was prepared to the required concentration according to the product manual.
Experimental Design
A549 cells were randomly divided into ten groups with different treatments as follows: (1) control group; (2) irradiation (IR) group; (3) irradiation+Ferrostatin-1(IR+Fer-1) group; (4) IR+LV-NRF2 group; (5) IR+LV-p62 group; (6) IR+siRNA-Keap1 group; (7) LV-NRF2 group; (8) LV-P62 group; (9) siRNA-Keap1 group; (10) Ferrostatin-1(Fer-1) group. For irradiation, the cells were received 0, 2, 4, 6, 8, and 10 Gy X-ray radiation. The beam was 6 MV X-ray at a dose rate of 2.0 Gy/min. Cells were treated with different concentration of Ferrostatin-1 30 min before radiation in IR+Fer-1 group.
Clonogenic assay
For standard clonogenic assays, A549 cells were seeded into 6-well plates at density of 2000 cells per well and incubated for 24h. Then, the cells were pretreated with Fer-1 for 30 min, followed by 0, 2, 4, 6, 8, and 10 Gy X-ray radiation. The cells were incubated at 37 °C for another 12 days to allow for colony formation and subsequently stained with crystal violet. Only viable colonies consisting of 50 or more cells were counted.
Cell viability assay
A549 cells were plated at the density of 5 × 103 cells per well in 96-well plates. After overnight culture, cells were pretreated with various concentrations of Fer-1 for 30 min, followed by 0, 2, 4, 6, 8, and 10 Gy X-ray radiation. Cell viability was evaluated with Cell Counting Kit-8 Assay Kit (Do Jindo Laboratories, Kumamoto, Japan) according the manufacturer’s instructions.
Quantitative real time polymerase chain reaction
Total RNA isolation was carried out by using the RNA Purification Kit (Yi Shan Biotechnology Company, Shanghai, China). The complementary DNA (cDNA) was synthesized and amplified with the reverse transcription kit (Takara, Osaka, Japan). cDNA from various cell samples was prepared by quantitative real time PCR kit (Takara, Osaka, Japan) with GAPDH as internal control and was amplified with specific primers (NRF2: forward 5′-TCTGCCAACTACTCCCAGGT-3′ and reverse 5′- AATGTCTGCGCCAAAAGCTG -3′; P62: forward 5′-CCCTCTCCCAGATGCTGTCCAT-3′ and reverse 5′-G CCGCTCCGAT GTCATAGTTCT-3′; Keap1: forward 5′-CGTGGCTGTCCTCAATCGTCTC-3′ and reverse 5′-CGCTTCGGATGGTGTTCATTGC-3′; GAPDH: forward 5′-CAAATTCCATGGCACCGTCA-3′ and reverse 5′-AGCATCGCCCCACTTGATTT-3′).
Western blot analysis
Cells were lysed in RIPA buffer containing 1nM phenylmethylsulfonyl fluoride (PMSF) and phosphatase and protease inhibitors on ice. Then, the lysates were centrifuged at 12,000 g for 20 min at 4°C, and the protein concentration of the supernatant was determined using the BCA Protein Assay Kit (Thermo Scientific, USA). Equal amounts of protein were separated via 8% to 10% SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, Bedford, MA, USA). Next, the membranes were blocked with 5% skim milk for 1 h at room temperature and incubated with the desired primary antibodies overnight at 4℃, followed by incubation with horseradish peroxidase-coupled secondary antibodies. The details of primary antibodies used in this paper were shown as follows: P62 (1:10000, ab155282, Abcam, UK), Keap1 (1:500, 10503-2-AP, Sanying BioTECH, China), Nrf2 (1:1000, ab62352, Abcam, UK), HO1 (1:500, 10701-1-AP, Sanying BioTECH, China), NQO1 ((1:500, 11451-1-AP, Sanying BioTECH, China), FTH1 (1:1000, ab170888, Abcam, UK) and rabbit anti-GAPDH (KGAA002, KeyGEN BioTECH, China, 1:10000). The immunocomplexes were finally analyzed using a chemiluminescence reagent (Millipore, Bedford, MA, USA) and detected on photographic film.
Morphological Observation of Mitochondria and Mitochondrial Membrane Potential Assay
The mitochondria morphology of A549 cells was observed by transmission electron microscopy (TEM). A549 cells were fixed with 2.5% glutaraldehyde in phosphoric acid buffer, post fixed in 1% osmium acid for 2h at room temperature, and dehydrated in a graded series of ethanol. The ultrathin sections were cut with a diamond knife and stained with 3% uranium acetate and lead citrate. Captured the TEM images using transmission electron microscope (JEM-1011, Japan).
Mitochondrial membrane potential was measured using Mitochondrial membrane potential assay kit with JC-1 (Keygen Biotech, Nanjing, China) according to the manufacturer’s instructions. Briefly, cells were stained with JC-1 working solution for 20 min at 37 °C, washed twice with incubation buffer, and then analyzed by flow cytometry (Becton-Dickinson, USA).
Measurement of intracellular Fe2+ and ROS
The intracellular Fe2+ was determined using the fluorescent indicator PGSK (Keygen Biotech, Nanjing, China). Cell suspensions were collected and supplemented with the PGSK probe. After 30 min of incubation, cells were centrifuged, washed, and resuspended. Finally, the relative PGSK level was measured by flow cytometry (Becton-Dickinson, USA).
The ROS level was detected with the fluorescent probe DCFH-DA (Keygen Biotech, Nanjing, China) by flow cytometry. In brief, A549 cells with different treatments were incubated with DCFH-DA for 30 min at 37°C and subsequently washed with PBS. After incubation, the fluorescence of the cells was measured using flow cytometry (Becton-Dickinson, USA).
Measurement of lipid peroxidation and glutathione
MDA content, a product of lipid peroxidation, was used to assess the level of lipid peroxidation. The relative malondialdehyde (MDA) concentration in cell lysates was assessed using a Lipid Peroxidation (MDA) Assay Kit according the manufacturer’s instructions. Briefly, the MDA in the sample reacts with thiobarbituric acid (TBA) to generate a MDA-TBA adduct. The MDA-TBA adduct can be easily quantified colorimetrically (OD = 532 nm). Values were normalized for protein content of the lysates. The relative glutathione (GSH) concentration in cell lysates was estimated using a Glutathione Assay Kit according the manufacturer’s instructions.
Immunofluorescence
After treatment, cells were plated on glass coverslips and fixed with 4% paraformaldehyde for 15 minutes and then blocked with 5% BSA for 1 hour at room temperature. Immunofluorescence was performed by incubating with antibodies against GPX4 (1:200, ab125066, Abcam, UK) and ACSL4 (1:100, ab155282, Abcam, UK) at 4 °C overnight. On the second day, cells were incubated with Goat Anti-Rabbit IgG antibodies and then washed thrice in PBS. Nuclei were counterstained using 4ʹ,6-diamidino-2-phenylindole (DAPI) for 10 minutes. The cells were observed under a fluorescence microscope.
Statistical analysis
Statistical analysis was performed through GraphPad Prism 7 (GraphPad Software, San Diego, CA, USA). Results were presented as the mean ± SD. The differences between pairwise comparisons were determined using Student's t-test. The comparisons among multiple groups were carried out by one-way ANOVA followed by a Bonferroni correction. Various of P less than 0.05 were considered statistically significant.