1. Brown SP, Cornforth DM, Mideo N. Evolution of virulence in opportunistic pathogens: generalism, plasticity, and control. Trends Microbiol. 2012;20:336-42.
2. Bäumler A, Fang FC. Host Specificity of Bacterial Pathogens. Cold Spring Harb Perspect Med. 2013;3(12):a010041.
3. Painter JA, Hoekstra RM, Ayers T, Tauxe RV, Braden CR, Angulo FJ, Griffin PM. Attribution of Foodborne Illnesses, Hospitalizations, and Deaths to Food Commodities by using Outbreak Data, United States, 1998–2008. Emerg Infect Dis. 2013;19:407-15.
4. Hoffmann S, Devleesschauwer B, Aspinall W, Cooke R, Corrigan T, Havelaar A, Angulo F, et al. Attribution of global food borne disease to specific foods: Findings from a World Health Organization structured expert elicitation. PLoS ONE. 12(9):2017; e0183641.l
5. Reddy EA, Shaw AV, Crump JA. Community-acquired bloodstream infections in Africa: a systematic review and meta-analysis. Lancet Infect Dis. 2010;10(6):417–32.
6. Tanner JR, Kingsley RA. Evolution of Salmonella within Hosts. Trends Microbiol. 2018;26(12):986–98.
7. Kingsley RA, Msefula CL, Thomson NR, Kariuki S, Holt KE, Gordon MA, Harris D, et al. Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. Genome Res. 2009;19(12):2279-87.
8. Klemm EJ, Wong VK, Dougan G. Emergence of an extensively drug-resistant Salmonella enterica serovar Typhi clone harboring a promiscuous plasmid encoding resistance to fluoroquinolones and third-generation cephalosporins. MBio. 2018;9:e00105–18.
9. Feasey NA, Dougan G, Kingsley RA, Heyderman RS, Gordon MA. Invasive non-typhoidal Salmonella disease: an emerging and neglected tropical disease in Africa. Lancet. 2012;379:2489–99.
10. Uche IV, MacLennan CA, Sau A. A Systematic Review of the Incidence, Risk Factors and Case Fatality Rates of Invasive Nontyphoidal Salmonella (iNTS) Disease in Africa (1966 to 2014). PLoS Negl Trop Dis. 2017;11(1):e0005118.
11. Ryan CA, Nickels MK, Hargrett-Bean NT, Potter ME, Endo T, Mayer L, et al. Massive outbreak of antimicrobial-resistant salmonellosis traced to pasteurized milk. JAMA. 1987;258:3269–74..
12. Clinical Laboratory Standards Institute (CLSI), Performance standards for antimicrobial susceptibility testing twenty second informational supplement, Document M100-S22, Clinical Laboratory Standards Institute, Wayne, Pa, USA, 2012. 27th edition, January 2017.
13. Rosenbaum S. Law and the Public’s Health. Public Health Reports. September–October, 2014; 129:455-7.
14. Amenu K, Wieland B, Szonyi B, Grace D. Milk handling practices and consumption behavior among Borana pastoralists in southern Ethiopia. J Health Popul Nutr. 2019;38:
15. Olsen SJ, Ying M, Davis MF. Multidrug-resistant Salmonella Typhimurium Infection from Milk Contaminated after Pasteurization. Emerg Infect Dis. 2004;10:932-5.
16. Langer AJ, Ayers T, Grass J, Lynch M, Angulo FJ, Mahon BE. Nonpasteurized Dairy Products, Disease Outbreaks, and State Laws—United States, 1993–2006. Emerg Infect Dis. 2012;18(3):385-91.
17. Robertson JMC, McKenzie NH, Duncan M, Allen-Vercoe E, Woodward MJ, Flint HJ, Grant G. Lack of flagella disadvantages Salmonella enterica serovar Enteritidis during the early stages of infection in the rat. J Med Microbiol. 2003;52:91–9.
18. Yim L, Betancor L, Martínez A, Bryant C, Maskell D, Chabalgoity JA. Naturally Occurring Motility-Defective Mutants of Salmonella enterica Serovar Enteritidis Isolated Preferentially from Nonhuman Rather than Human Sources. Appl Environ Microbiol. 2011;77:7740–48.
19. Fredericks DN, Relman DA. Sequence-based identification of microbial pathogens: a reconsideration of Koch's postulates. Clin Microbiol Rev. 1996;9(1):18–33.
20. Watts GS, Youens‐Clark K, Slepian MJ, Wolk DM, Oshiro MM, Metzger GS, et al. 16S rRNA gene sequencing on a benchtop sequencer: accuracy for identification of clinically important bacteria. J Appl Microbiol. 2017;123(6):1584–96.
21. Clarridge JE. Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clin Microbiol Rev. 2004;17(4):840-62,
22. Hong S, Farrance CE. Is it Essential to Sequence the Entire 16S rRNA Gene for Bacterial Identification? Amer Pharmac Rev. November/December 2015;1-7.
23. Drancourt M, Bollet C, Carlioz A, Martelin R, Gayral J-P, Raoult D. 16S Ribosomal DNA Sequence Analysis of a Large Collection of Environmental and Clinical Unidentifiable Bacterial Isolates. J Clin Microbiol. 2000;38(10):3623–30.
24. Janda JM, Abbott SL. 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. J Clin Microbiol. 2007;45(9):2761-4.
25. Verraes C, Boxstael SV, Meervenne EV, Coillie EV, Butaye P, Catry B, de Schaetzen M-A, et al. Antimicrobial Resistance in the Food Chain. Int J Environ Res Public Health 2013;10:2643-69.
26. Aviv G, Rahav G, Gal-Mor O. Horizontal Transfer of the Salmonella enterica Serovar Infantis Resistance and Virulence Plasmid pESI to the Gut Microbiota of Warm-Blooded Hosts. MBio. 2016;7(5):e01395-16.
27. Pornsukarom S, Thakur S. Horizontal Dissemination of Antimicrobial Resistance Determinants in Multiple Salmonella Serotypes following Isolation from the Commercial Swine Operation Environment after Manure Application. Appl Environ Microbiol. 2017;83(20):e01503-17.
28. Conwell M, Daniels V, Naughton PJ, Doole JSG. Interspecies transfer of vancomycin, erythromycin and tetracycline resistance among Enterococcus species recovered from agrarian sources. BMC Microbiol. 2017;17(1):19.
29. Lerminiaux NA, Cameron ADS. Horizontal transfer of antibiotic resistance genes in clinical environments. Can J Microbiol. 2019;65:34–44.