Structural and thermodynamic properties of Cu(II) complexes with rat amylin, amylin1−19, pramlintide and Ac-pramlintide were studied and compared to each other by using mass spectrometry, potentiometry, UV-Vis and CD spectroscopy. The mass spectrometric measurements provided information about the stoichiometry of the formed complexes. The combined UV-Vis and CD results allowed to conclude the binding mode of copper(II) and the geometry of these species formed in solution, while the potentiometric titrations were the basis for the determination of precise stability constants and pH-dependent species distribution diagrams for the studied systems.
Stoichiometry of Cu(II) binding. MS results for Cu(II)-rat amylin, Cu(II)- amylin1−19 and Cu(II)-pramlintide complexes, have already been discussed in our previous works, showing a 1:1 stoichiometry.16,34 An analogous situation occurs for the Cu(II)-Ac-pramlintide complex – the MS signals correspond to the free ligand (m/z = 998.26, z = 4+) and the copper(II) complex (m/z = 1013.24, z = 4+) (Figure S1). Other signals that occur in all spectra come from sodium, potassium and chloride adducts of ligands or of their Cu(II) complexes. The simulated isotopic patterns of copper(II) complexes are in a perfect agreement with the experimental ones.
Protonation equilibria. In membrane mimicking SDS solution, rat amylin (KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY-NH2) behaves as an LH3 acid, with the deprotonating groups corresponding to the N-terminal amine group, the tyrosine side chain, and the lysine side chain with pKa values of 7.85, 10.08 and 10.44, respectively. In the case of amylin1−19 (KCNTATCATQRLANFLVHS-NH2) three protonation constants were detected, corresponding to the histidine imidazole, the N-terminal amine group and the lysine side chain group, with pKa values of 7.28, 8.18 and 9.88, respectively. Pramlintide (KCNTATCATQRLANFLVHSSNNFGPILPPTNVGSNTY-NH2) behaves as an LH4 acid, with the deprotonating groups corresponding to the histidine imidazole, N-terminal amine group, and the tyrosine and lysine side chain groups, with pKa values of 6.76, 8.39, 9.93 and 10.92, respectively. Three protonation constants were calculated for Ac-pramlintide (Ac-KCNTATCATQRLANFLVHSSNNFGPILPPTNVGSNTY-NH2) and were related to deprotonation of the histidine imidazole, the tyrosine side chain groups and lysine side chain group, with pKa values of 7.57, 10.01 and 10.50, respectively. The cysteine groups are bridged with a disulfide bond, and the C-terminal amino acids are amidated as in the wild type forms of ligands. The comparison between protonation constants of amylin-like ligands in SDS and water solutions is shown in Table S1.
The coordination of Cu(II) to rat amylin begins at pH 4 (Figure S2). The maximum of the CuHL form occurs around pH 6.5, with the N-terminal amine group and the closest amide involved in coordination, resulting in a pronounced CT band near 290 nm and d-d transition at 581 nm in the CD spectra, respectively (Figure S3), indicating that the complex starts to adopt a square planar geometry, with the amide nitrogen being involved in the coordination. The next deprotonation leads to the formation of the CuL form, with a pKa value of 6.83. A blue shift and an increase in intensity in CD (from 581 to 571 nm, Table S2 and Figure S3) and UV-Vis (from 538 to 530 nm, Table S2 and Figure S4) is observed, which confirms that one more amide is involved in coordination, resulting in an {NH2, 2N−} binding mode (Figure 2A).45 The coordination sphere is completed with a water molecule. The two remaining deprotonations (pKa of 9.61 and 10.04) lead to CuH−1L and CuH−2L form and are related to the deprotonation of the unbound tyrosine and lysine side chains and do not change the coordination sphere. In contrast, as our previous work showed, in water solution, the N-terminal amine group and three amide nitrogens are involved in binding Cu(II) ion, resulting in an {NH2, 3N−} binding mode at pH ≈ 7,5.34
The first Cu(II)-amylin1−19 complex (CuH2L) observed at acidic pH (with a maximum above pH 5.5 (Figure S5)), most probably involves His18 in binding. At pH 6, the maximum of the CuHL complex (pKa = 5.92) is observed. In the CD spectra, a CT band near 278 nm and d-d transition band at 590 nm appear (Figure S6), and in the UV-Vis spectra, a band near 558 nm (Figure S7) is visible. Taken together, these results suggest that His18 and an amide group are engaged in coordination at this pH. The next two deprotonations lead to the formation of CuL and CuH−1L complexes, with pKa values of 6.08 and 7.07, respectively. The observed shift in the CD spectra (from 590 to 580 nm and then to 574 nm, Table S2 and Figure S6) and in UV-Vis (from 558 to 551 nm and then to 542 nm, Table S2 and Figure S7), indicate the participation of two more amide nitrogens in the metal coordination, resulting {Nim, 3N−} binding mode (Figure 2B) with a square planar geometry at pH 8. This mode does not change with further increase of pH; pKa values of 8.98 and 10.05 correspond to the deprotonation of the N-terminal amine group and of the side chain of lysine, respectively; both groups do not take part in binding. In contrast, in water solution, the amide starts to participate in the binding at lower pH - the complex has a {Nim, 3N−} binding mode already at pH 6.16
The first Cu(II)-pramlintide complex with form (CuH3L) starts form around pH 3 (Figure S8) and reaches its maximum above pH 5.5. At this point, the His18 imidazole is most probably involved in coordination of copper(II) ions. At pH 6, the CuH2L complex form appears (pKa = 5.97) where most likely, the N-terminal amino group is involved in binding, what is confirmed by the UV-Vis band at 557 nm (Figure S10). The loss of one proton leads to the formation of the CuHL complex, with a maximum at pH 7. The CD d-d transition band shifts from 621 to 591 nm (Table S2, Figure S9) and the UV-Vis band - from 557 to 548 nm (Table S2, Figure S10), which suggests that an amide is directly involved in binding. Above pH 9, the CuL complex dominates, with pKa of 7.71. The shift and increase in intensity in the CD (from 591 to 581 nm, Table S2 and Figure S9) and UV-Vis spectra (from 548 to 530 nm, Table S2 and Figure S10) confirm the involvement of a second amide in the coordination. At pH 10, the next species form, CuH−1L starts to dominate in the solution, with the third amide group taking part in coordination, what is confirmed by a significant shift in the CD (from 581 to 569 nm, Table S2 and Figure S9) and UV-Vis spectra (from 530 to 515 nm, Table S2 and Figure S10). Most likely, at pH 10, in the Cu(II)-pramlintide complex, two forms are present in equilibrium: the first one, in which the N-terminal amine and the adjacent amides are bound to Cu(II) (Figure 2C), and the second, where the His18 imidazole and three preceding amides are involved in the binding (Figure 2D). The two remaining deprotonations (pKa of 10.28 and 10.89), leading to CuH−2L and CuH−3L forms, are related to the deprotonation of the unbound tyrosine and lysine side chains and do not change the coordination mode. This equilibrium of the two forms is analogous to that found in water solution at pH 7.5 - one with a {NH2, 3N−}, and the second, with {Nim, 3N−} binding mode.34
The first complex form of N-terminally acetylated pramlintide, Ac-pramlintide, CuHL, reaches its maximum at pH 7 (Figure S11), with the His18 imidazole and the amide group in the Cu(II) coordination sphere. The appearance of a d-d transition band at 613 nm in the CD spectra (Figure S12) and the band near 610 nm in the UV-Vis spectra (Figure S13), confirms that the amide nitrogen is involved in the coordination. The loss of next two protons leads to the formation of CuL and CuH−1L complexes, with a maximum at pH 9 and 10 and pKa values of 8.61 and 9.33, respectively. Shifts in the CD (from 613 to 596 nm and then to 589 nm, Table S2 and Figure S12) and in the UV-Vis spectra (from 610 to 584 nm and then to 565 nm, Table S2 and Figure S13) are observed, suggesting that the next two amide groups are engaged in coordination, resulting in an {Nim, 3N−} coordination mode (Figure 2D). The biding mode does not change with the increase of pH; the CuH−3L complex results from the deprotonation of the tyrosine and lysine residues, which do not take part in Cu(II) binding.
Comparison of metal binding abilities. To compare the binding ability of Cu(II) to all investigated amylin analogues, competition plots were made, which are based on the calculated complex stability constants and show a hypothetical situation, in which equimolar amounts of the compared ligands and Cu(II) are present. Up to pH 5, the abundance of Cu(II)-amylin1−19 and Cu(II)-pramlintide complexes are nearly identical. At this point, both ligands coordinate Cu(II) via one imidazole group. At higher pH values, amylin1−19 binds Cu(II) via His18 and three amide nitrogens, while the pramlintide Cu(II) complex is most likely observed the presence of two forms in equilibrium – one with a {NH2, 3N−}, and the second, with {Nim, 3N−} binding mode.
Above pH 6, Cu(II)-amylin1−19 becomes the most thermodynamically stable among all analyzed complexes, suggesting that the presence of the C-terminal part of amylin analogues lowers their affinity towards copper(II). The C-terminus plays an auxiliary, yet crucial, role in binding; its appropriate arrangement makes metal binding sterically unfavorable and prevents early binding of Cu(II), thus improving thermodynamic stability of the complex, even if it is not directly involved.
The stability of the N-terminally bound Cu(II) complex with rat amylin is lower than that of amylin1−19 and pramlintide, but slightly higher than that of Cu(II)-Ac-pramlintide, which includes imidazole and amide nitrogens in the coordination sphere, which points out the relevance of the presence of the free N-terminus in the discussed ligands (Figure 3).
The binding modes (Table 1 and Table 2) and affinities (Figure 4) of the studied ligands in 40 mM SDS presented in this work were compared to those in water solution (data for amylin1−19 taken from ref. 16 and for rat amylin and pramlintide from ref. 34). Thermodynamic stability of all presented complexes is significantly higher in water solutions than in SDS. Also, in all cases, square planar geometry of complexes starts to form at a lower pH value (pH ≈ 6) for water solutions when compared to SDS solutions (pH ≈ 7). In in the presence of membrane-mimicking solution, all studied amylin analogues and their Cu(II) complexes adopt helical-like structures, showing two characteristic minima at 222 and 208 nm and one maximum at 193 nm in the CD spectra (Figure S14). This suggests that (i) SDS may act as a crowding agent and that (ii) the α-helical structure, imposed by the solvent, ‘protects’ the amides from binding – the structure has to unwind, at least locally, in order to form a square planar complex with Cu(II) ions - a similar effect was observed in α-helical, His-rich peptides.46–48
Table 1
Summary of proposed binding modes in both 40 mM SDS and water solution for investigated amylin analogues at pH = 7.4.
ligand
|
40 mM SDS
|
H2O16,34
|
rat amylin
|
NH2, 1N−/2N−
|
Nim 2N−
|
amylin1−19
|
Nim, 2N−
|
Nim, 3N−
|
pramlintide
|
Nim, NH2, 1N−
|
Nim, 3N− or NH2, 3N−
|
Ac-pramlintide
|
Nim, 1N−
|
-
|
Table 2
Summary of proposed binding modes in both 40 mM SDS and water solution for investigated amylin analogues at pH = 10.
ligand
|
40 mM SDS
|
H2O16,34
|
rat amylin
|
NH2, 2N−
|
Nim 3N−
|
amylin1−19
|
Nim, 3N−
|
Nim, 3N−
|
pramlintide
|
Nim, 3N− or NH2, 3N−
|
Nim, 3N− or NH2, 3N−
|
Ac-pramlintide
|
Nim, 3N−
|
-
|