1.
Buck L, Axel R: A novel multigene family may encode odorant receptors: a molecular basis for odor
recognition. Cell 1991, 65(1):175-187.
2.
Nei M, Niimura Y, Nozawa M: The evolution of animal chemosensory receptor gene repertoires: roles of chance and
necessity. Nature reviews Genetics 2008, 9(12):951-963.
3.
Touhara K, Vosshall LB: Sensing odorants and pheromones with chemosensory receptors. Annual review of physiology 2009, 71:307-332.
4.
Saito H, Chi Q, Zhuang H, Matsunami H, Mainland JD: Odor coding by a Mammalian receptor repertoire. Science signaling 2009, 2(60):ra9.
5.
Young JM, Shykind BM, Lane RP, Tonnes-Priddy L, Ross JA, Walker M, Williams EM, Trask
BJ: Odorant receptor expressed sequence tags demonstrate olfactory expression of over
400 genes, extensive alternate splicing and unequal expression levels. Genome biology 2003, 4(11):R71.
6.
Malnic B, Hirono J, Sato T, Buck LB: Combinatorial receptor codes for odors. Cell 1999, 96(5):713-723.
7.
Zhang X, Firestein S: The olfactory receptor gene superfamily of the mouse. Nature neuroscience 2002, 5(2):124-133.
8.
Glusman G, Yanai I, Rubin I, Lancet D: The complete human olfactory subgenome. Genome Res 2001, 11(5):685-702.
9.
Niimura Y: Identification of olfactory receptor genes from mammalian genome sequences. Methods in molecular biology 2013, 1003:39-49.
10.
Alioto TS, Ngai J: The odorant receptor repertoire of teleost fish. BMC genomics 2005, 6:173.
11.
Niimura Y: Olfactory receptor multigene family in vertebrates: from the viewpoint of evolutionary
genomics. Current genomics 2012, 13(2):103-114.
12.
Hayden S, Bekaert M, Crider TA, Mariani S, Murphy WJ, Teeling EC: Ecological adaptation determines functional mammalian olfactory subgenomes. Genome Res 2010, 20(1):1-9.
13.
Niimura Y, Nei M: Extensive gains and losses of olfactory receptor genes in mammalian evolution. PloS one 2007, 2(8):e708.
14.
Matsui A, Go Y, Niimura Y: Degeneration of olfactory receptor gene repertories in primates: no direct link to
full trichromatic vision. Molecular biology and evolution 2010, 27(5):1192-1200.
15.
Niimura Y, Matsui A, Touhara K: Extreme expansion of the olfactory receptor gene repertoire in African elephants and
evolutionary dynamics of orthologous gene groups in 13 placental mammals. Genome Res 2014, 24(9):1485-1496.
16.
Go Y, Niimura Y: Similar numbers but different repertoires of olfactory receptor genes in humans and
chimpanzees. Molecular biology and evolution 2008, 25(9):1897-1907.
17.
Nei M, Rooney AP: Concerted and birth-and-death evolution of multigene families. Annual review of genetics 2005, 39:121-152.
18.
Wartzok D, Ketten DR: Marine mammal sensory systems. In: Reynolds J, Rommel S, editors. Biology of marine
mammals. Washington (DC): Smithsonian Institution Press; 1999.
19.
Dennis MY, Harshman L, Nelson BJ, Penn O, Cantsilieris S, Huddleston J, Antonacci
F, Penewit K, Denman L, Raja A et al: The evolution and population diversity of human-specific segmental duplications. Nature ecology & evolution 2017, 1(3):69.
20.
Simionato E, Ledent V, Richards G, Thomas-Chollier M, Kerner P, Coornaert D, Degnan
BM, Vervoort M: Origin and diversification of the basic helix-loop-helix gene family in metazoans:
insights from comparative genomics. BMC evolutionary biology 2007, 7:33.
21.
Liu A, He F, Gu X: Identification and characterization of tyrosine kinases in anole lizard indicate the
conserved tyrosine kinase repertoire in vertebrates. Molecular genetics and genomics : MGG 2017, 292(6):1405-1418.
22.
Liu A, Wang Y, Zhang D, Wang X, Song H, Dang C, Yao Q, Chen K: Classification and evolutionary analysis of the basic helix-loop-helix gene family
in the green anole lizard, Anolis carolinensis. Molecular genetics and genomics : MGG 2013, 288(7-8):365-380.
23.
Demuth JP, De Bie T, Stajich JE, Cristianini N, Hahn MW: The evolution of mammalian gene families. PloS one 2006, 1:e85.
24.
Freitag J, Ludwig G, Andreini I, Rossler P, Breer H: Olfactory receptors in aquatic and terrestrial vertebrates. J Comp Physiol A 1998, 183(5):635-650.
25.
Mezler M, Konzelmann S, Freitag J, Rossler P, Breer H: Expression of olfactory receptors during development in Xenopus laevis. J Exp Biol 1999, 202(Pt 4):365-376.
26.
Niimura Y, Nei M: Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proc Natl Acad Sci U S A 2005, 102(17):6039-6044.
27.
Ache BW, Young JM: Olfaction: diverse species, conserved principles. Neuron 2005, 48(3):417-430.
28.
International Chicken Genome Sequencing C: Sequence and comparative analysis of the chicken genome provide unique perspectives
on vertebrate evolution. Nature 2004, 432(7018):695-716.
29.
Hughes GM, Boston ESM, Finarelli JA, Murphy WJ, Higgins DG, Teeling EC: The Birth and Death of Olfactory Receptor Gene Families in Mammalian Niche Adaptation. Molecular biology and evolution 2018, 35(6):1390-1406.
30.
Hecker N, Sharma V, Hiller M: Transition to an Aquatic Habitat Permitted the Repeated Loss of the Pleiotropic KLK8
Gene in Mammals. Genome biology and evolution 2017, 9(11):3179-3188.
31.
Olender T, Fuchs T, Linhart C, Shamir R, Adams M, Kalush F, Khen M, Lancet D: The canine olfactory subgenome. Genomics 2004, 83(3):361-372.
32.
Shi P, Zhang J: Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor
gene repertoires in the vertebrate transition from water to land. Genome Res 2007, 17(2):166-174.
33.
Zhu K, Zhou X, Xu S, Sun D, Ren W, Zhou K, Yang G: The loss of taste genes in cetaceans. BMC evolutionary biology 2014, 14:218.
34.
Liu Z, Liu G, Hailer F, Orozco-terWengel P, Tan X, Tian J, Yan Z, Zhang B, Li M: Dietary specialization drives multiple independent losses and gains in the bitter
taste gene repertoire of Laurasiatherian Mammals. Frontiers in zoology 2016, 13:28.
35.
Katoh K, Standley DM: MAFFT multiple sequence alignment software version 7: improvements in performance
and usability. Molecular biology and evolution 2013, 30(4):772-780.
36.
Man O, Gilad Y, Lancet D: Prediction of the odorant binding site of olfactory receptor proteins by human-mouse
comparisons. Protein science : a publication of the Protein Society 2004, 13(1):240-254.
37.
Takezaki N, Rzhetsky A, Nei M: Phylogenetic test of the molecular clock and linearized trees. Molecular biology and evolution 1995, 12(5):823-833.
38.
Stamatakis A: RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 2014, 30(9):1312-1313.
39.
Niimura Y, Nei M: Evolution of olfactory receptor genes in the human genome. Proceedings of the National Academy of Sciences of the United States of America 2003, 100(21):12235-12240.
40.
Niimura Y, Nei M: Comparative evolutionary analysis of olfactory receptor gene clusters between humans
and mice. Gene 2005, 346:13-21.
41.
Li L, Stoeckert CJ, Jr., Roos DS: OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 2003, 13(9):2178-2189.
42.
Yang Z: PAML 4: phylogenetic analysis by maximum likelihood. Molecular biology and evolution 2007, 24(8):1586-1591.