Cell culture
Cell lines were purchased from American Type Culture Collection (ATCC, Rockville, MD, USA). In this study, we used a panel of human colorectal cancer (CRC) cell lines representing different CRC stages and normal colon epithelial cell line. CCD-481CoN cell line was used as a normal colon epithelial cell line, and SW480 (Dukes’ B), HCT15 (Dukes’ C) and HCT116 (Dukes’ D) cell lines were used as CRC cell lines. CRC stages were classified according to the tumour staging which follows Dukes’ classification criteria. All cells were cultured in Dulbecco's Modified Eagle Medium (DMEM, high glucose, Nacalai Tesque, Japan) supplemented with 10% fetal bovine serum (FBS, Gibco, USA) and 1% penicillin-streptomycin (Sigma-Aldrich, USA). Cells were incubated at 37°C in a humidified incubator, BINDER (Tuttlingen, Germany), with 5% CO2.
Cell lysate preparation
Briefly, after the cells were quantified, cells were resuspended in the assay buffer. The cells were then homogenized using the homogenizer Ultrasonic Vibracell (Sonics and Materials, Connecticut, USA) by pulsing for 5 sec and resting for 25 sec in 10 cycles. The tube containing cells lysate was homogenized in ice to reduce the heat produced by ultrasonic. Tubes containing cell lysate and debris were centrifuged at 14000 rpm, 4°C for 10 minutes. The supernatants were transferred to new tubes and kept at -20°C until further use.
HPRT ELISA assay
HPRT level was measured using an ELISA sandwich technique for HPRT (Cloud-Clone Corp, USA, Cat. No. SEA717Hu) according to the manufacturer’s instructions. Cells were lysed as described above. Detection assay is based on the horseradish peroxidase (HRP) colorimetric reaction by adding tetramethylbenzidine (TMB) substrate. The absorbance was measured immediately at 450 nm using microplate reader (BMG Labtech, Germany).
Xanthine oxidase (XO) assay
The XO activity was quantified spectrophotometrically using the xanthine oxidase activity colorimetric assay kit (Biovision, USA, Cat. No. K710). The assay is based on XO in the sample oxidizing xanthine to hydrogen peroxide (H2O2), which reacts stoichiometrically with OxiRed Probe to generate colour at an optical density of 570 nm. Briefly, 44 μl assay buffer, 2 μl enzyme Mix, 2 μl substrate mix and 2 μl OxiRed probe were mixed and added into the designated wells on the plate. The reactions were initiated by adding 50μL of prepared 2 μl standard or cell lysate into each well. The absorbance measurements (A1 and A2) had been taken after incubation in the dark at room temperature by using microplate reader (BMG Labtech, Germany) at wavelength 570 nm. The standard curve was plotted by several dilutions of H2O2 standard and the volume was adjusted to 50 μl/well by dH2O. The XO activity of the samples was calculated using the equation as shown below:
B = the amount of H2O2 generated by XO from standard curve (nmol)
T1 = the time of the first reading (A1) (min)
T2 = the time of the second reading (A2) (min)
V = pre-treated sample volume added into the reaction well (ml)
Hypoxanthine/xanthine assay
Hypoxanthine/ xanthine level in all cell lines was detected using a xanthine/hypoxanthine colorimetric assay kit (Biovision, USA- Cat. No. K685). According to the manufacturer's instructions, cells (1 × 106) were incubated on ice with 100 μl ice-cold xanthine assay buffer for 10 min, after centrifuging at 12,000 rpm for 5 min, the supernatant was collected and incubated with the Reaction Mix for 30 min at room temperature. A standard curve was plotted by several dilutions of xanthine standard and the volume was adjusted to 50 μl/well by xanthine assay buffer. The absorbance was measured at the wavelength of 570 nm.
Uric acid (UA) assay
Uric acid quantification was performed by using uric acid colorimetric assay Kit, (BioVision, USA, Cat. No. K608) according to manufacturer’s instructions. Briefly, 46 μl UA assay buffer, 2 μl UA enzyme Mix and 2 μl UA probe were mixed and added into the designated wells on the plate. The reactions were initiated by adding 50μl of prepared UA standard or cell lysate into each well. The plates were incubated for 30 minutes at 37°C and protected from light. A standard curve was plotted by several dilutions of UA standard and the volume was adjusted to 50 μl/well by UA assay buffer. The absorbance was measured at wavelength 570 nm.
RNA isolation and cDNA synthesis
Total RNA from all cells lines was extracted using nucleospin RNA extraction kit (Macherey-Nagel, Germany, Cat. No. 740955) according to the manufacturer’s instructions. Total RNA concentration and the absorbance ratio (A230/208 and 260/ 280 nm) of the RNA initial quality were measured by using SpectraMax® QuickDrop™ UV-Vis spectrophotometer (Molecular Devices, USA). RNA integrity was assessed by gel electrophoresis assay. According to the manufacturer’s instructions, 200 ng of the total RNA was used for reverse transcription using SensiFAST™ cDNA Synthesis kit (Bioline, UK, Cat. No. BIO-65053).
Quantitative real-time PCR (qRT-PCR)
qRT-PCR was performed using a CFX96 machine (BioRad, Japan). The reactions were carried out in triplicate using intercalating dye SensiFASTTM SYBR® & Fluorescein kit (Bioline, UK, Cat. No. BIO96005) following the manufacturer’s instructions. The sequence of oligonucleotide primers that were used for qRT-PCR amplifications was listed in Table 1. Each reaction was performed to a final volume of 10 μL, and the concentration of primers was at 400 nM. The Thermocycler program was adjusted with an initial start cycle at 95 °C for 2 min, followed by 39 cycles at 95 °C for 5 sec and 60 °C for 30 sec. To confirm product specificity, melting curve analysis was performed after each amplification. Two independent reference genes, GAPDH and HPRT1 were used for normalization. The human CRC cell lines ENT2 expression fold change relative to normal colon cell line was determined by using the 2-ΔΔCT method.
Table 1: Primer sequences used for qPCR
Gene
|
Forward
|
Reverse
|
ENT2
|
5’-CCACTCTCTCACCGAAGCCTAA- 3’
|
5’-GCAGGAAGAACAGCACCAACA-3’
|
GAPDH
|
5’-GCATCCTGGGCTACACTGAG-3’
|
5’-TCCTCTTGTGCTCTTGCTGG-3’
|
HPRT1
|
5’-GAGTCCTATTGACATCGCCAGT-3’
|
5’-TCCGCCCAAAGGGAACTGAT-3’
|
Statistical Analysis
All data were statistically analyzed by utilizing IBM SPSS Statistical Software Version 27 (International Business Machines Corp, New York). The results were expressed as means ± SD. The significant difference between the two groups was assessed using the Student’s t-test, and the differences between multiple groups were assessed by two-way analysis of variance (ANOVA). Statistical evaluation of ENT2 gene expression was performed using CFX96 software followed by one-way ANOVA. 𝑃 < 0.05 was considered statistically significant.