Akobeng AK (2007) Understanding diagnostic tests 3: Receiver operating characteristic curves. Acta Paediatr 96 (5):644-647. doi:10.1111/j.1651-2227.2006.00178.x
Balestrieri E, Cipriani C, Matteucci C, Benvenuto A, Coniglio A, Argaw-Denboba A, Toschi N, Bucci I, Miele MT, Grelli S, Curatolo P, Sinibaldi-Vallebona P (2019) Children With Autism Spectrum Disorder and Their Mothers Share Abnormal Expression of Selected Endogenous Retroviruses Families and Cytokines. Front Immunol 10:2244. doi:10.3389/fimmu.2019.02244
Chang Q, Yang H, Wang M, Wei H, Hu F (2018) Role of Microtubule-Associated Protein in Autism Spectrum Disorder. Neurosci Bull 34 (6):1119-1126. doi:10.1007/s12264-018-0246-2
Chen J, Lei L, Tian L, Hou F, Roper C, Ge X, Zhao Y, Chen Y, Dong Q, Tanguay RL, Huang C (2018) Developmental and behavioral alterations in zebrafish embryonically exposed to valproic acid (VPA): An aquatic model for autism. Neurotoxicol Teratol 66:8-16. doi:10.1016/j.ntt.2018.01.002
Chin CH, Chen SH, Wu HH, Ho CW, Ko MT, Lin CY (2014) cytoHubba: identifying hub objects and sub-networks from complex interactome. BMC Syst Biol 8 Suppl 4:S11. doi:10.1186/1752-0509-8-S4-S11
Cirnigliaro M, Barbagallo C, Gulisano M, Domini CN, Barone R, Barbagallo D, Ragusa M, Di Pietro C, Rizzo R, Purrello M (2017) Expression and Regulatory Network Analysis of miR-140-3p, a New Potential Serum Biomarker for Autism Spectrum Disorder. Front Mol Neurosci 10:250. doi:10.3389/fnmol.2017.00250
Dalman MR, Deeter A, Nimishakavi G, Duan ZH (2012) Fold change and p-value cutoffs significantly alter microarray interpretations. BMC Bioinformatics 13 Suppl 2:S11. doi:10.1186/1471-2105-13-S2-S11
Davis S, Meltzer PS (2007) GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor. Bioinformatics 23 (14):1846-1847. doi:10.1093/bioinformatics/btm254
Duffy FH, Als H (2012) A stable pattern of EEG spectral coherence distinguishes children with autism from neuro-typical controls - a large case control study. BMC Med 10:64. doi:10.1186/1741-7015-10-64
Edgar R, Domrachev M, Lash A (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30(1):207-10. doi:doi: 10.1093/nar/30.1.207
Gregg JP, Lit L, Baron CA, Hertz-Picciotto I, Walker W, Davis RA, Croen LA, Ozonoff S, Hansen R, Pessah IN, Sharp FR (2008) Gene expression changes in children with autism. Genomics 91 (1):22-29. doi:10.1016/j.ygeno.2007.09.003
Gu Z, Eils R, Schlesner M (2016) Complex heatmaps reveal patterns and correlations in multidimensional genomic data. Bioinformatics 32 (18):2847-2849. doi:10.1093/bioinformatics/btw313
Hooshmandi M, Wong C, Khoutorsky A (2020) Dysregulation of translational control signaling in autism spectrum disorders. Cell Signal 75:109746. doi:10.1016/j.cellsig.2020.109746
Huang d, W., Sherman B, Lempicki R (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4(1):44-57. doi:doi: 10.1038/nprot.2008.211
Huang WC, Chen Y, Page DT (2016) Hyperconnectivity of prefrontal cortex to amygdala projections in a mouse model of macrocephaly/autism syndrome. Nat Commun 7:13421. doi:10.1038/ncomms13421
Irwin JL, Yeates AJ, Mulhern MS, McSorley EM, Strain JJ, Watson GE, Grzesik K, Thurston SW, Love TM, Smith TH, Mruzek DW, Shamlaye CF, Monthy C, Myers GJ, Davidson PW, van Wijngaarden E (2019) Maternal Gestational Immune Response and Autism Spectrum Disorder Phenotypes at 7 Years of Age in the Seychelles Child Development Study. Mol Neurobiol 56 (7):5000-5008. doi:10.1007/s12035-018-1424-y
Kim HJ, Cho MH, Shim WH, Kim JK, Jeon EY, Kim DH, Yoon SY (2017) Deficient autophagy in microglia impairs synaptic pruning and causes social behavioral defects. Mol Psychiatry 22 (11):1576-1584. doi:10.1038/mp.2016.103
Kosmicki JA, Samocha KE, Howrigan DP, Sanders SJ, Slowikowski K, Lek M, Karczewski KJ, Cutler DJ, Devlin B, Roeder K, Buxbaum JD, Neale BM, MacArthur DG, Wall DP, Robinson EB, Daly MJ (2017) Refining the role of de novo protein-truncating variants in neurodevelopmental disorders by using population reference samples. Nat Genet 49 (4):504-510. doi:10.1038/ng.3789
Li X, Chauhan A, Sheikh AM, Patil S, Chauhan V, Li XM, Ji L, Brown T, Malik M (2009) Elevated immune response in the brain of autistic patients. J Neuroimmunol 207 (1-2):111-116. doi:10.1016/j.jneuroim.2008.12.002
Lord C, Rutter M, Goode S, J H, Jordan H, Mawhood L, E S (1989) Autism diagnostic observation schedule: a standardized observation of communicative and social behavior Journal of Autism and Developmental Disorder VoL 19
Lord C, Rutter M, Le Couteur A (1994) Autism Diagnostic Interview-Revised: a revised version of a diagnostic interview for caregivers of individuals with possible pervasive developmental disorders. A J Autism Dev Disord (5):659-85. doi:doi: 10.1007/BF02172145
Madore C, Leyrolle Q, Lacabanne C, Benmamar-Badel A, Joffre C, Nadjar A, Laye S (2016) Neuroinflammation in Autism: Plausible Role of Maternal Inflammation, Dietary Omega 3, and Microbiota. Neural Plast 2016:3597209. doi:10.1155/2016/3597209
Mercati O, Huguet G, Danckaert A, Andre-Leroux G, Maruani A, Bellinzoni M, Rolland T, Gouder L, Mathieu A, Buratti J, Amsellem F, Benabou M, Van-Gils J, Beggiato A, Konyukh M, Bourgeois JP, Gazzellone MJ, Yuen RK, Walker S, Delepine M, Boland A, Regnault B, Francois M, Van Den Abbeele T, Mosca-Boidron AL, Faivre L, Shimoda Y, Watanabe K, Bonneau D, Rastam M, Leboyer M, Scherer SW, Gillberg C, Delorme R, Cloez-Tayarani I, Bourgeron T (2017) CNTN6 mutations are risk factors for abnormal auditory sensory perception in autism spectrum disorders. Mol Psychiatry 22 (4):625-633. doi:10.1038/mp.2016.61
Roberts JE, Hatton DD, Long AC, Anello V, Colombo J (2012) Visual attention and autistic behavior in infants with fragile X syndrome. J Autism Dev Disord 42 (6):937-946. doi:10.1007/s10803-011-1316-8
Robin X, Turck N, Hainard A, Tiberti N, Lisacek F, Sanchez JC, Muller M (2011) pROC: an open-source package for R and S+ to analyze and compare ROC curves. BMC Bioinformatics 12:77. doi:10.1186/1471-2105-12-77
Roux PP, Topisirovic I (2018) Signaling Pathways Involved in the Regulation of mRNA Translation. Mol Cell Biol 38 (12). doi:10.1128/MCB.00070-18
Smith AM, King JJ, West PR, Ludwig MA, Donley ELR, Burrier RE, Amaral DG (2019) Amino Acid Dysregulation Metabotypes: Potential Biomarkers for Diagnosis and Individualized Treatment for Subtypes of Autism Spectrum Disorder. Biol Psychiatry 85 (4):345-354. doi:10.1016/j.biopsych.2018.08.016
Sonenberg N, Hinnebusch AG (2009) Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Cell 136 (4):731-745. doi:10.1016/j.cell.2009.01.042
Subramanian A, Tamayo P, Mootha V, Mukherjee S, Ebert B, Gillette M, Paulovich A, Pomeroy S, Golub T, Lander E, Mesirov J (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 102(43). doi:doi: 10.1073/pnas.0506580102
Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, Santos A, Doncheva NT, Roth A, Bork P, Jensen LJ, von Mering C (2017) The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res 45 (D1):D362-D368. doi:10.1093/nar/gkw937
Theoharides TC, Tsilioni I, Patel AB, Doyle R (2016) Atopic diseases and inflammation of the brain in the pathogenesis of autism spectrum disorders. Transl Psychiatry 6 (6):e844. doi:10.1038/tp.2016.77
Tilot AK, Bebek G, Niazi F, Altemus JB, Romigh T, Frazier TW, Eng C (2016) Neural transcriptome of constitutional Pten dysfunction in mice and its relevance to human idiopathic autism spectrum disorder. Mol Psychiatry 21 (1):118-125. doi:10.1038/mp.2015.17
Valayi S, Eftekharian MM, Taheri M, Alikhani MY (2017) Evaluation of antibodies to cytomegalovirus and Epstein-Barr virus in patients with autism spectrum disorder. Hum Antibodies 26 (3):165-169. doi:10.3233/HAB-180335
Walter W, Sanchez-Cabo F, Ricote M (2015) GOplot: an R package for visually combining expression data with functional analysis. Bioinformatics 31 (17):2912-2914. doi:10.1093/bioinformatics/btv300
Wang H, Zhang M, Xie Q, Yu J, Qi Y, Yue Q (2019) Identification of diagnostic markers for major depressive disorder by cross-validation of data from whole blood samples. PeerJ 7:e7171. doi:10.7717/peerj.7171
Wang X, Ding R, Song Y, Wang J, Zhang C, Han S, Han J, Zhang R (2020) Transcutaneous Electrical Acupoint Stimulation in Early Life Changes Synaptic Plasticity and Improves Symptoms in a Valproic Acid-Induced Rat Model of Autism. Neural Plast 2020:8832694. doi:10.1155/2020/8832694
Wettenhall J, Smyth G (2004) limmaGUI: a graphical user interface for linear modeling of microarray data. Bioinformatics 20(18):3705-6. doi:doi: 10.1093/bioinformatics/bth449
Yu G, Wang LG, Han Y, He QY (2012) clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS 16 (5):284-287. doi:10.1089/omi.2011.0118