2.1 Cell culture
Human hepatocellular carcinoma cell lines (Huh7, Hep3B, MHCC-97H, PLC/PRF/5 and SK-Hep1) and non-tumor human hepatic cell line (LO2) were all purchased from ATCC. Cells were maintained in DMEM supplemented with 1% streptomycin-penicillin (Sigma) and 10% serum (Biowest) at 37 ℃ in a humidified atmosphere with 5% CO2.
2.2 Reagents
TOC, CQ (Chloroquine), CHX (Cycloheximide) and MG-132 were purchased from Selleck Chemicals. 3-methyladenine (3-MA) and Z-VAD (Z-Val-Ala-Asp (OMe)-FMK) were purchased from MedChem Express. Lipofectamine 3000 reagent was purchased from Invitrogen. The antibodies involved in this study were listed as following: cleaved caspase-3 (9664S; Cell Signaling Technology, Danvers, MA, USA), PARP (ab74290; Abcam, Cambridge, MA, USA), cleaved PARP (ab32064; Abcam), LC3 (NB100‐2220; Novus, Saint Charles, MO, USA), ATG5 (12994S; Cell Signaling Technology), Akt (4685; Cell Signaling Technology), phosphorylated (p‐)Akt (Ser473) (4060; Cell Signaling Technology), mTOR (2972; Cell Signaling Technology), p‐mTOR (Ser2448) (2971; Cell Signaling Technology), p70S6K (9202; Cell Signaling Technology), p‐p70S6K (Ser371) (9208; Cell Signaling Technology), Cyr61 (122190, ZEN BIO), Ki67 (ab66155; Abcam), β‐actin (sc‐1616; Santa Cruz Biotechnology), and horseradish peroxidase‐conjugated anti‐rabbit secondary antibody (sc‐2004; Santa Cruz Biotechnology), horseradish peroxidase-conjugated anti‐mouse secondary antibody (sc‐2005; Santa Cruz Biotechnology).
2.3 Measurement of cell viability
TOC-effects on tumor cell growth were evaluated by MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenylte-trazolium bromide, Sigma) assay and colony formation assay described as before 13, respectively, for short-term and long-term. Cell proliferation was detected emloying the EdU incorporation assay kit (RiboBio Co., Ltd, C10310). And the operation was completely conducted according to the instruction. Images were collected with a fluorescence microscope.
2.4 Lactate dehydrogenase release assay
Cell cytotoxicity of TOC was assessed by lactate dehydrogenase release (LDH) assay, using an LDH test kit (Beyotime Biotechnology, Nanjing, China). The experiment was carried out in accordance with the supplier’s instructions.
2.5 Flow cytometry
Cells were harvested after 24 hours TOC treatment, and washed once with PBS, then fixed with 70% medicinal alcohol for 48 hours. These fixed cells prepared for cell cycle analysis (Beyotime Biotechnology, Nanjing, China) were washed with PBS, followed by FACS detection. FlowJo software was applied to data analysis.
2.6 TUNEL assay
Cells were seeded onto glass coverslips in 24-well plates beforehand, subsequently dealing with TOC for 24 hours. 30 mins fixed in 4% paraformaldehyde later, terminal deoxynucleotidyl transferase-mediated nick-end labeling (TUNEL) staining was conducted with the Dead End Fluorometric TUNEL system (Promega). Using a fluorescent microscope, the TUNEL-positive cells were detected and photographed in every independent experiment.
2.7 Transmission electron microscopy
After treated with or without 10 µM TOC, Huh7 and Hep3B cells were fixed in 3% glutaraldehyde. When the samples were embedded after dehydration, ultrathin sections of ~70 nm were prepared and then double stained with 2% uranyl acetate and Reynolds lead citrate. Autophagic vesicles were analyzed by Hitachi HT7800 electron microscopy at 80kV.
2.8 Acridine orange staining
Acridine orange staining assay was performed to evaluate autophagy as described previously 14. Cells suspended in PBS were stained with 1 mmol/L acridine orange (Sigma-Aldrich) for 5 minutes.
2.9 Immunofluorescence
Cells were plated in glass coverslips in 24-well plates, fixed in 4% formaldehyde for 2 hours, then permeabilized with PBS containing 0.3% Triton X-100 and 5% BSA for 1.5 hours. After that, these cells were incubated with antibodies against LC3 and LAMP2 at 4℃ overnight, and subsequently incubated with Alexa Fluor secondary antibodies for 1.5 hours. Nuclei were stained with DAPI (Santa Cruz Biotechnology). Image capture was performed using confocal laser scanning microscopy (Zeiss).
2.10 RNA interference
The RNA interference assay was conducted using ATG5, Cyr61, and scramble small interfering RNA (siRNA) synthesized by GenePharma (Shanghai, China) following the manufacturer’s instructions, using Lipofectamine 3000 reagent (Thermo Fisher Scientific). The sequences of siRNA included in transfection were human ATG5 siRNA, 5′-GCAACU‐CUGGAUGGGAUUGTT‐3′; human Cyr61 siRNA, 5′‐AACAUC‐AGUGCACAUGUAUUG‐3′.
2.11 Western blotting
Cells were harvested after treatment and then lysed in RIPA buffer added with protease and phosphatase inhibitor cocktail (Sigma, p8340). Proteins were isolated using SDS-PAGE and then transferred to a 0.22 µm polyvinylidene difluoride (PVDF) membrane. Blocked the transferred membrane in 5% skimmed milk for 1 hour, and the samples were incubated in suitable primary antibody in 4°C overnight and then incubated with the secondary antibody at room temperature for 1.5 hours. Immunoreactive bands were detected with enhanced chemiluminescence reagent, with β-actin serving as internal control.
2.12 Cellular thermal shift assay
Cells were harvested after treated with or without TOC for 12h and resuspend with PBS. The suspension was divided into six tubes, then heated for 5mins to 54, 57, 60, 64, 67, 70℃ followed by 3 cycles of freeze-thawing with liquid nitrogen and centrifugation at 15000g for 15 mins.
2.13 Animal models
8-week-old male NOD/SCID mice purchased from HFK Bioscience Co., Ltd (Beijing) were employed to establish the orthotopic liver cancer models. Huh7 cells (1×106 cells/mouse) were collected and suspended in PBS and engrafted in the mammary fat pad of NOD/SCID mice. Tumor volumes were assessed daily according to the following formula: tumor volume (mm3) = (length × width2)/2. Mice were randomized into four groups, 0.1 mL of vehicle (physiologic saline), TOC 5 mg/kg, CQ 25 mg/kg, or TOC 5 mg + CQ 25 mg/kg, when the tumor volumes reached ~100 mm3. Mice in all groups were administered orally once a day. When significant differences were obtained between the four groups, they were euthanized for analysis. All procedures performed on mice in our study were approved by the Institutional Animal Care and Treatment Committee of Sichuan University.
2.14 Immunohistochemistry
The tumor samples and major organs from xenograft models were embedded in paraffin and cut into 4-µm-thick sections. All sections were dewaxed, rehydrated, then quenched the endogenous peroxidase activity, then treated with citrate buffer to remove antigen. After incubation with indicated primary antibodies at 4°C overnight, sections were stained with diaminobenzidine and re-stained with Mayer hematoxylin. H&E staining was done to the major organs (heart, liver, spleen, lung, and kidney) sections. Imaging was visualized with DM2500 fluorescence microscope.
2.15 Statistical analysis
Statistical analysis was done using GraphPad Prism 8. Statistical differences were calculated using one-way ANOVA or Student’s t test. Herein, two-tailed P values of less than 0.05 were considered statistically significant. Unless otherwise stated, data were described as mean ± SEM.