2.1. Microfluidic device and its fabrication
The deployed microfluidic device architecture has been reported by Warkiani et al. 13,17−19, and was adopted for the isolation of CTCs from the SF. A microfluidic chip was structured as two polydimethylsiloxane (PDMS) layers (Sylgard 184 from Dow Corning, MI, USA) made by mixing liquid PDMS and curing agent in a 10:1 ratio (w/w). The top layer of the device fabricated by employing the previously reported micromolding process was bonded to a flat layer of PDMS following oxygen plasma treatment for 2 min (Harrick Plasma, USA); 1.5 mm holes were punched at the beginning and ends of the microfluidic channel and 1.5-mm tygon tubes were inserted into each inlet/outlet.
2.2. Cell culture
The proof-of-concept experiments were performed using DU145, PC3, and LNCaP PCa cell lines. These cell lines were cultured under standard conditions in a humidified incubator (Panasonic, South Korea) at 37°C, in 5% CO2. DU-145 and PC-3 cell lines were cultured in RPMI-1640 medium (Thermofisher Scientific, USA) with Glutamax supplement (Gibco, USA), 10% heat-inactivated, 0.22 µm filtered fetal bovine serum (Life Technologies, Inc), and 1% Penicillin-Streptomycin (Life Technologies, Inc). For LNCaP cell line, an RPMI-1640 medium (Thermofisher Scientific, USA) supplemented with 10% heat-inactivated, 0.22 µm filtered fetal bovine serum (Life Technologies, Inc), 1% insulin-transferrin (Paneco, Russia), 1% HEPES pH 7.2–7.5 (Paneco, Russia), 1% nonessential amino acid solution (Gibco, USA), 1% gentamycin (Paneco, Russia), was used. RAW264.7 cell line, used as a negative control, was cultivated by using DMEM-F12 (PanEco, Russia) media with 1% penicillin (Invitrogen, USA), 100% streptomycin (Invitrogen, USA) and 10% bovine serum albumin (BSA) (Invitrogen, USA). T-25 and T-75 filtered flasks (Corning, USA) were used for subculturing of the cell lines. Cell dissociation was performed using 0.25% (w/v) Trypsin- 0.53 mM EDTA solution (Thermofisher Scientific, USA). Replating was carried out at a 1 to 6 ratio. Cell culture medium was renewed every 2 or 3 days. Cell lines were STR profiled for authenticity.
2.3. Proof-of-Concept Experiments
The ability of the microfluidic chip to isolate PCa CTCs in the SF was initially evaluated using human SF samples spiked with a predetermined number of DU-145 cells at approximately 1000 cells per standard volume (2–3 mL) of healthy male’s SF. For proper characterization, DU-145 cells were first stained with 4',6-diamidino-2-phenylindole (DAPI) prior to PCa SF spiking. Separation was then performed at flow rates of 1.1, 1.3, 1.5, 1.7, 1.9, and 2.1 mL/min to briefly characterize an ideal flow rate for further testing. Following this, DU-145 (or LNCaP, or PC3) cells were spiked at approximately 1000 cells into a standard volume (2–3 mL) of healthy male’s SF. SF samples were liquified for 30 min in a humidified incubator (Panasonic, South Korea) at 37°C prior to the addition of PCa cells. The sample was then transferred to a 15 mL falcon tube, centrifuged at 1000 rpm for 7 min and the supernatant was replaced with 5 mL of Dulbecco’s phosphate buffered saline (DPBS). Then the solution was processed using a microfluidic chip with a syringe pump mounted at the device input pumping tested fluid (Baoding Shenchen Precision Pump Co., Ltd, Baoding, China) connected with Tygon tubing (0.02-inch inner diameter, 0.06-inch outer diameter). The flow rate was optimised as 1.7 mL/min. The microfluidic chip outlet was split into ‘target’ and ‘waste’ fractions, where the target fraction contained most of the PCa cells (DU-145, LNCaP, or PC3), while the waste fraction contained most of the sperm cells. The mixture of cells in the target fraction was fixed with 4% paraformaldehyde (PFA) (ThermoFisher Scientific, USA) solution in DPBS for 10 min, and therefore prepared for antibody labelling. After fixation, the solution was centrifuged at 1000 rpm and the supernatant was replaced with 5 mL of DPBS. Further, a potential of additional processing of the target fraction through the microfluidic chip was assessed in terms of the separation efficiency of the residual sperm cells. All the experiments were repeated 5 times.
2.4. Clinical samples
The second component of this study included the collection and processing of SF samples obtained from PCa patients and healthy volunteers, which was performed under the ethical approval provided by Sechenov University Local Ethics Committee (extraction from protocol № 17–19). The samples were collected at Sechenov University Clinical Hospital №2, Moscow, Russia. All donors provided written informed consent for collection of their SF samples and provision of their clinical data. The study was conducted in accordance with the Declaration of Helsinki (2013). In total, 15 patients with diagnosed localized PCa and 15 healthy volunteers provided SF samples, which were collected and analyzed in a non-blinded manner. SF samples were collected in sterile collection cups, and ranged between 0.5 mL and 3.5 mL in volume. Samples were transported from the hospital to the testing lab in a thermal container for microfluidic processing and further analysis. Each SF sample was incubated for 30 min in a humidified incubator (Panasonic, South Korea) at 37°C for liquefaction of the SF. Then, each sample centrifuged at 1000 rpm for 7 min and the pellets were resuspended in 5 mL of DPBS. After, the cells were fixed with 4% PFA solution in DPBS for 10 min, centrifuged again, and resuspended in 5 mL of DPBS. The solution was then processed using the microfluidic chip connected to the syringe pump (Baoding Shenchen Precision Pump Co., Ltd, Baoding, China) at the flow rate of 1.7 mL/min.
2.5. Immunofluorescence staining
For the proof-of-concept experiments using cultured PCa cells lines, collected fractions were centrifuged onto four adhesive glass slides (ThermoFisher Scientific, Australia) using a Thermo Scientific™ Cytospin™ 4 Cytocentrifuge (ThermoFisher Scientific, Australia) and air-dried. Further, three primary and three secondary antibodies were applied. The primary antibodies were as follows: rabbit monoclonal recombinant anti-prostate specific membrane antigen (PSMA) antibody (Abcam, catalog number ab76104, Cambridge, UK), mouse monoclonal anti-cytokeratin (CK) antibody (Abcam, catalog number ab86374, Cambridge, UK) and rabbit monoclonal recombinant anti-Glypican 1 (GPC-1) antibody (Abcam, catalog number ab199343, Cambridge, UK). The secondary antibodies were as follows: goat anti-rabbit IgG H&L Alexa Fluor 568 (Abcam, Cambridge, UK), goat anti-mouse IgG H&L Alexa Fluor 488 (Abcam, Cambridge, UK), goat anti-rabbit IgG H&L Alexa Fluor 647 (Abcam, Cambridge, UK). After incubations with the primary and secondary antibodies, the cells were mounted with a ProLong Gold Anti-Fade Mountant (Abcam, Cambridge, UK) containing DAPI, covered with a coverslip and counted under a fluorescence microscope (Zeiss Axio Imager Z2 Upright Microscope). The same number of DU-145 (or PC3, or LNCaP) cells, as the one added to the SF sample, was deposited onto the glass slide and labelled with anti-CK + AlexaFluor488 antibodies, then mounted with a ProLong Gold Anti-Fade Mountant (Abcam, Cambridge, UK) containing DAPI, covered with a coverslip, and counted under a fluorescence microscope (Zeiss Axio Imager Z2 Upright Microscope).
Sequential labelling was employed to identify isolated PCa CTCs in the clinical samples processed by using the microfluidic chip. The same antibodies as described above were applied. These antibodies were used at the concentrations recommended by the manufacturer. Staining was performed by first permeabilizing cells with a 0.2% Tween-20 in phosphate buffered saline (PBS) (ThermoFisher Scientific, USA) for 10 min at room temperature. After permeabilization, the glass slides were washed with DPBS 3 times for 5 min and air-dried. Glass slides were then incubated with a 3% solution of BSA in phosphate-buffered saline with Tween® detergent (PBST) (0.05% solution of Tween-20 in PBS) for 1 hour at room temperature, for minimization of unspecific binding of the antibodies. As the next step, the BSA in PBST solution was gently washed from the glass slides, and the solution of first primary antibody in PBST with 1% BSA was added onto the slides and incubated overnight at 4°C. Afterwards, the glass slides were gently washed with DPBS 3 times for 5 min, air-dried and incubated with 3% BSA in PBST solution of secondary antibody for 1 hour. Then, the glass slides were washed with DPBS 3 times for 5 min and air-dried. The incubations with other two primary and secondary antibodies were performed as described above. Finally, cells were mounted with a ProLong Gold Anti-Fade Mountant (Abcam, Cambridge, UK) containing DAPI, covered with a coverslip and observed under the confocal microscope.
2.6. Cell enumeration and data analysis
Fluorescent laser-scanning confocal microscope Zeiss LSM880 (ZeissAG, Germany) supported by Zen Black software (ver 3.1), was employed to image glass slides with tested specimens. To establish a benchmark for identification and enumeration of the isolated СTCs, healthy SF samples were spiked with approximately 1000 PC3 or DU-145 cells, processed by the chip, and immunocytostained as described above. Images of the immunocytostained cells were then obtained using laser scanning microscope Zeiss LSM880 and Zen Black software. The acquired fluorescence signal intensity of cells was quantified by using Fiji ImageJ software. Further, the mean (± SD) value of the signal intensity was measured and assigned as a threshold for fluorescence signal intensities from different fluorescent wavelengths. The isolated cells were assigned as PCa cells if the signal intensity was above the established thresholds for all three fluorescence channels (PSMA+, CK+, GPC-1+). In addition, to evaluate the potential diagnostic and prognostic value of the technique, a correlation between the amounts of the isolated CTCs and PSA serum levels, or Gleason score (GS) was estimated.