MP culture
MP, ATCC15531 strain (American Type Culture Collection, Rockville, MD, USA) was cultured in modified Hayflick medium (GZBIOTEST Co., Ltd, Guangdong, China) supplemented with horse serum, PPLO broth, 25% yeast extract, 0.5% glucose, 0.025% thallium acetate, penicillin G (1,000 U/ml), and 0.002% phenol red, pH 7.6, at 37 °C, 5% CO2 for 7 days.
Cell culture and infection
A549 and 293T cells were purchased from the Shanghai Cell Bank, Chinese Academy of Sciences (Shanghai, China) and cultured in DMEM (Gibco, Grand Island, NY, USA) containing 10% fetal bovine serum (Gibco,) at 37°C 5% CO2.
For MP infection, culture medium was replaced with MP infection medium containing 10% MP (approximately 1 × 107 CFU/106 cells) unless otherwise specified, and cultured for 12, 24, and 48 h. Culture medium containing only mycoplasma broth without bacteria was used to culture control cells.
Enzyme-linked immunosorbent assay (ELISA)
The contents of IL-8 and TNF-α were determined with ELISA kit (Jiancheng, Nanjing, China) according to the manufacturer’s protocol.
Real-time PCR
Total RNA was extracted using Trizol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer’s instructions. One microgram of total RNA was used to generate cDNAs using the Revert AidTM First Strand cDNA Synthesis Kit (#K1622; Thermo Fisher Scientific Inc, Grand Island, NY, USA) with random primer. Then, real-time PCR was performed to quantify mRNA levels with SYBR Green PCR Master Mix (#K0223; Thermo) on an ABI 7300 thermocycler (Applied Biosystems, Foster City, CA, USA). The relative gene expression levels were quantified using 2 -ΔCt method and β-actin was used as an internal control. The Primers were as follows:
PERK Primer F 5' ATCGCAGAGGCAGTGGAG 3'
Primer R 5' CATTGGGGTCAGAACCGT 3'
IRE1α Primer F 5' GAGGACAGGCTCAATCAA 3'
Primer R 5' GGTCAGGAGGTCAATAACA 3'
ATF6 Primer F 5' TTCCGTGACTAAACCTGT 3'
Primer R 5' TTAATCTCGCCTCTAACC 3'
β-actin Primer F 5' TGGCATTGCCGACAGG 3'
Primer R 5' GCATTTGCGGTGGACG 3'
QTF extract
All TCM were purchased from Shanghai Huayu Chinese Herbs Co. Ltd. including bark of Morus alba L. (XD14122403, Henan Province), bark of Lycium chinense Mill. (LY1501125, Shanxi Province), peach kernel from Prunus persica L. (XD14082202, Hebei Province), whole plant of Ardisia japonica (Thumb.) Blume (LY1410211, Henan Province), Pheretimaas pergilum (E Perrier) (LY1412060, Shanghai City), almond from Amygdalus communis Vas (XD14071106, Hebei Province), seed of Perilla frutescens (L.) Britt. (YT14121701, Gansu Province), Heleocharis dulcis (Burm. f.) Trin. (DH14092405, Shandong Province), and rhizome of Glycyrrhiza uralensis Fisch. (HY14112503, Gansu Province). The QTF components (250 g) were pulverized with a motor-driven grinder to prepare the extract. Then the extract was refluxed twice with distilled water (2 L) for 1 h each time, followed by filtration, centrifugation, and evaporation to dryness under reduced pressure in a rotary evaporator. The yield was 13.6 %.
Evaluation of reactive oxygen species (ROS)
Cells were harvested and probed with 10 μM of 2',7'-Dichlorodihydrofluorescein diacetate (DCFH-DA) (Beyotime, Shanghai, China) at 37°C for 20 min, followed by analysis with a flow cytometry (BD Biosciences, Franklin Lakes, NJ, USA).
Western blot
Total cells and tissues were prepared with RAPI buffer containing proteinase inhibitor (Pierce, Rockford, IL, USA). NE-PER™ Nuclear and Cytoplasmic Extraction Reagents (Thermo Fisher Scientific) was used to separate the cytosolic fraction and nuclear extracts. . Supernatant samples were separated by 10% or 15% SDS-PAGE and transferred onto nitrocellulose membranes (Millipore, Billerica, WI, USA). After blocking with 5% non-fat milk, the membranes were probed with primary antibodies (anti-PERK, Abcam, Ab229912; anti-eIF2, Abcam, Ab169528; anti p-eIF2, Abcam, Ab32157; anti-ATF4, Proteintech,10835-1-AP; anti-CHOP, Proteintech,15204-1-AP; anti-β-actin, Proteintech, 66009-1-lg; anti-NF-κB, Abcam, Ab16502; anti-H3, Proteintech,17168-1-AP) at 4°C overnight. The second day, after washing away the unbound antibody, the membranes were washed and incubated with HRP-conjugated rabbit secondary antibody (Beyotime) at room temperature for 1 h. The signals from the immunoreactive proteins were detected using the ECL reagent (Millipore).
Lentivirus preparation
Short hairpin RNA (shRNA) oligos targeting PERK were annealed and cloned into AgeI- and EcoRI-digested pLKO.1 (Addgene, Cambridge, MA, USA). The full-length human PERK was cloned into pLVX-puro (Clontech, Palo Alto, CA, USA). The lentivirus was produced in 293T cells along with packaging plasmids, psPAX2 and pMD2.G.
MP infection mouse model
Four-week-old BALB/c mice (15 ± 1 g) were obtained from Shanghai Sippr Bk Laboratory Animals Co. Ltd. (Shanghai, China). All mice were randomly divided into five groups: control, model, QTF low dose, QTF middle dose, and QTF high dose (n=6). Control group mice were treated with 100 μL normal saline by nasal drip. All the other groups were treated with nasal drops containing 100 μL MPFH (1 × 107 ccu/mL) for 2 days. Afterwards, 0.25 mL normal saline per 20 g body weight were orally given to the mice in the control and model groups by gavage once a day. QTF groups were orally given 0.425, 0.85, and 1.7 g/kg QTF for 3 consecutive days, respectively. Ethical approval for the study was provided by the independent ethics committee of Shanghai University of Traditional Chinese Medicine. The inferior lobe of the right lung was harvested on the fifth day and fixed with 4% paraformaldehyde, embedded with paraffin, and cut into slices for hematoxylin and eosin (H&E) staining. Morphometric analysis was performed using an optical microscope (Leica DMLB, Germany). Alveolar lavage fluid was harvested to detect the release of IL-8 and TNF-α.
Statistical analysis.
All the experiments were conducted at least three times. Data were expressed as means ± standard deviations. Statistical analysis was performed by using ANOVA test. A P value of <0.05 indicated a significant difference.