1.Jack T: Plant development going MADS. Plant Molecular Biology 2001, 46(5):515–520.
2.Norman C, Runswick M, Pollock R, Treisman R: Isolation and properties of cDNA clones encoding SRF, a transcription factor that binds to the c-fos serum response element. Cell 1988, 55(6):989–1003.
3.Passmore S, Maine GT, Elble R, Christ C, Tye BK: Saccharomyces cerevisiae protein involved in plasmid maintenance is necessary for mating of MATα cells ☆. Journal of Molecular Biology 1988, 204(3):593–606.
4.Sommer H, Beltrán JP, Huijser P, Pape H, Lönnig WE, Saedler H, Schwarzsommer Z: Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. Embo Journal 1990, 9(3):605–613.
5.Yanofsky MF, Ma H, Bowman JL, Drews GN, Feldmann KA, Meyerowitz EM: The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors. Nature 1990, 346(6279):35–39.
6.P S, AD S: The MADS-box family of transcription factors. European Journal of Biochemistry 1995, 229(1):1–13.
7.Xu Z, Zhang Q, Sun L, Du D, Cheng T, Pan H, Yang W, Wang J: Genome-wide identification, characterisation and expression analysis of the MADS-box gene family in Prunus mume. Molecular Genetics & Genomics 2014, 289(5):903–920.
8.JL R, EM M: MADS domain proteins in plant development. Biological Chemistry 1997, 378(10):1079–1101.
9.Gramzow L, Ritz MS, Theißen G: On the origin of MADS-domain transcription factors. Trends in Genetics 2010, 26(4):149–153.
10.Airoldi CA, Davies B: Gene duplication and the evolution of plant MADS-box transcription factors. Journal of Genetics and Genomics 2012, 39(4):157–165.
11.Ng M, Yanofsky MF: Function and evolution of the plant MADS-box gene family. Nature Reviews Genetics 2001, 2(3):186–195.
12.Par̆Enicová L, Folter SD, Kieffer M, Horner DS, Favalli C, Busscher J, Cook HE, Ingram RM, Kater MM, Davies B: Molecular and Phylogenetic Analyses of the Complete MADS-Box Transcription Factor Family in Arabidopsis New Openings to the MADS World: Doubleday Anchor Books; 2003.
13.Grimplet J, Martínez-Zapater JM, Carmona MJ: Structural and functional annotation of the MADS-box transcription factor family in grapevine. Bmc Genomics 2016, 17(1):80.
14.Gan DF: GENOME-WIDE SEQUENCE CHARACTERIZATION ANALYSIS OF MADS-BOX TRANSCRIPTION FACTOR GENE FAMILY IN CUCUMBER(Cucumis sativus L.). Journal of Nuclear Agricultural Sciences 2012.
15.Liu J, Jing Z, Zhang J, Miao H, Wang J, Gao P, Wei H, Jia C, Zhuo W, Xu B: Genome-wide analysis of banana MADS-box family closely related to fruit development and ripening. Scientific Reports 2017, 7(1):3467.
16.Wei B, Zhang RZ, Guo JJ, Liu DM, Li AL, Fan RC, Mao L, Zhang XQ: Genome-Wide Analysis of the MADS-Box Gene Family in Brachypodium distachyon. Plos One 2014, 9(1):e84781.
17.Ma J, Yang Y, Luo W, Yang C, Ding P, Liu Y, Qiao L, Chang Z, Geng H, Wang P: Genome-wide identification and analysis of the MADS-box gene family in bread wheat (Triticum aestivum L.). Plos One 2017, 12(7):e0181443.
18.Ghosh A, Islam T: Genome-wide analysis and expression profiling of glyoxalase gene families in soybean (Glycine max) indicate their development and abiotic stress specific response. Bmc Plant Biology 2016, 16(1):87.
19.Zhang L, Zhao J, Feng C, Liu M, Wang J, Hu Y: Genome-wide identification, characterization of the MADS-box gene family in Chinese jujube and their involvement in flower development. Scientific Reports 2017, 7(1):1025.
20.Coen ES, Meyerowitz EM: The war of the whorls: genetic interactions controlling flower development. Nature 1991, 353(6339):31–37.
21.B D: Floral organ identity: 20 years of ABCs. Seminars in Cell & Developmental Biology 2010, 21(1):73–79.
22.Smaczniak C, Immink RG, Angenent GC, Kaufmann K: Developmental and evolutionary diversity of plant MADS-domain factors: insights from recent studies. Development 2012, 139(17):3081.
23.Lüttge U: Ecophysiology of Crassulacean Acid Metabolism (CAM). Ann Bot 2004, 93(6):629–652.
24.Ming R, Vanburen R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E: The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics 2015, 47(12):1435–1442.
25.Li X, Kanakala S, He Y, Zhong X, Yu S, Li R, Sun L, Ma J: Physiological characterization and comparative transcriptome analysis of white and green leaves of Ananas comosus var. bracteatus. PloS one 2017, 12(1):e0169838.
26.Mockler TC, Michael TP, Priest HD, Shen R, Sullivan CM, Givan SA, Mcentee C, Kay SA, Chory J: The Diurnal Project: Diurnal and Circadian Expression Profiling, Model-based Pattern Matching, and Promoter Analysis. Cold Spring Harbor Symposia on Quantitative Biology 2007, 72(8):353.
27.Sharma A, Wai CM, Ming R, Yu Q: Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biology & Evolution 2017, 9(9):2170–2190.
28.L P, S dF, M K, DS H, C F, J B, HE C, RM I, MM K, B D: Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. The Plant Cell 2003, 15(7):1538–1551.
29.Tyagi AK, Vijay S, Ashok S, Swatismita R, Pinky A, Rita A, Sanjay K: MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. Bmc Genomics 2007, 8(1):242.
30.Leseberg CH, Li A, Kang H, Duvall M, Mao L: Genome-wide analysis of the MADS-box gene family in Populus trichocarpa. Gene 2006, 378(1):84–94.
31.Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D: The genome of the domesticated apple (Malus × domestica Borkh.). Nature Genetics 2010, 42(10):833–839.
32.Paterson AH, Bowers JE, Chapman BA: Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proceedings of the National Academy of Sciences of the United States of America 2004, 101(26):9903–9908.
33.J Y, J W, W L, S L, H L, J Z, P N, W D, S H, C Z: The Genomes of Oryza sativa: a history of duplications. 2005, 3(2):266–281.
34.Jiao Y, Li J, Tang H, Paterson AH: Integrated Syntenic and Phylogenomic Analyses Reveal an Ancient Genome Duplication in Monocots. Plant Cell 2014, 26(7):2792.
35.Boss PK, Bastow RM, Mylne JS, Dean C: Multiple pathways in the decision to flower: enabling, promoting, and resetting. Plant Cell 2004, 16(Suppl):S18.
36.Lee J, Lee I: Regulation and function of SOC1, a flowering pathway integrator. Journal of Experimental Botany 2010, 61(9):2247–2254.
37.Samach A, Onouchi H, Gold SE, Ditta GS, Schwarz-Sommer Z, Yanofsky MF, Coupland G: Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis. Science 2000, 288(5471):1613–1616.
38.Köhler C, Hennig L, Spillane C, Pien S, Gruissem W, Grossniklaus U: The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1. Genes Dev 2003, 17(12):1540–1553.
39.Bemer M, Woltersarts M, Grossniklaus U, Angenent GC: The MADS Domain Protein DIANA Acts Together with AGAMOUS-LIKE80 to Specify the Central Cell in Arabidopsis Ovules. Plant Cell 2008, 20(8):2088–2101.
40.Walia H, Josefsson C, Dilkes B, Kirkbride R, Harada J, Comai L: Dosage-dependent deregulation of an AGAMOUS-LIKE gene cluster contributes to interspecific incompatibility. Current Biology 2009, 19(13):1128–1132.
41.Pan IL, McQuinn R, Giovannoni JJ, Irish VF: Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development. Journal of experimental botany 2010, 61(6):1795–1806.
42.Staiger D: Circadian rhythms in Arabidopsis: time for nuclear proteins. Planta 2002, 214(3):334–344.
43.Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangrador-Vegas A: The Pfam protein families database: towards a more sustainable future. Nucleic Acids Research 2016, 44(Database issue):D279-D285.
44.RD F, J C, W A, BL M, TJ W, F S, A B, SR E: HMMER web server: 2015 update. Nucleic Acids Research 2015, 43(1):30–38.
45.Stamatakis A: RAxML Version 8: A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies. Bioinformatics 2014, 30(9):1312–1313.
46.Guo AY, Zhu QH, Chen X, Luo JC: [GSDS: a gene structure display server]. Yi Chuan 2007, 29(8):1023–1026.