1.Maleki M, Ghorbanpour M: Cold tolerance in plants: molecular machinery deciphered. In: Biochemical, Physiological and Molecular Avenues for Combating Abiotic Stress Tolerance in Plants. Elsevier; 2018: 57–71.
2.Sanghera GS, Wani SH, Hussain W, Singh N: Engineering cold stress tolerance in crop plants. Current genomics 2011, 12(1):30.
3.Miura K, Furumoto T: Cold signaling and cold response in plants. International journal of molecular sciences 2013, 14(3):5312–5337.
4.Steponkus PL: Cold acclimation and freezing injury from a perspective of the plasma membrane. Environmental injury to plants 1990:1–16.
5.Garba L, Shukuri Mo M, Nurbaya Os S, Noor Zalih R: Review on fatty acid desaturases and their roles in temperature acclimatisation. Journal of Applied Sciences 2017, 17:282–295.
6.Murata N, Ishizaki-Nishizawa O, Higashi S, Hayashi H, Tasaka Y, Nishida I: Genetically engineered alteration in the chilling sensitivity of plants. Nature 1992, 356(6371):710.
7.Li Q, Lei S, Du K, Li L, Pang X, Wang Z, Wei M, Fu S, Hu L, Xu L: RNA-seq based transcriptomic analysis uncovers alpha-linolenic acid and jasmonic acid biosynthesis pathways respond to cold acclimation in Camellia japonica. Sci Rep 2016, 6:36463.
8.Upchurch RG: Fatty acid unsaturation, mobilization, and regulation in the response of plants to stress. Biotechnology letters 2008, 30(6):967–977.
9.Routaboul J-M, Fischer SF: Trienoic fatty acids are required to maintain chloroplast function at low temperatures. Plant physiology 2000, 124(4):1697–1705.
10.Long SP, Spence AK: Toward cool C4 crops. Annual Review of Plant Biology 2013, 64:701–722.
11.Atkinson R, Mockford E, Bennett C, Christin P, Spriggs E, Freckleton R, Thompson K, Rees M, Osborne C: C4 photosynthesis boosts growth by altering physiology, allocation and size. Nature Plants 2016, 2.
12.Watcharamongkol T, Christin PA, Osborne CP: C4 photosynthesis evolved in warm climates but promoted migration to cooler ones. Ecology letters 2018, 21(3):376–383.
13.Edwards EJ, Still CJ: Climate, phylogeny and the ecological distribution of C4 grasses. Ecology letters 2008, 11(3):266–276.
14.Lin Z: Juncao Science. Beijing: National School of Administration Press; 2013.
15.Lin X, Lin Z, Lin D, Lin H, Luo H, Hu Y, Lin C, Zhu C: Effects of planting Pennisetum sp.(Giant Juncao) on soil microbial functional diversity and fertility in the barren hillside. Acta Ecol Sin 2014, 34(15):4304–4312.
16.Lin Z, Lin D, Su D, Lin H, Li J, Zheng D, Yu S: Effect of different salt-affected soils on biological characteristics of Pennisetum sp. Southwest China Journal of Agricultural Sciences 2015, 28(2):675–680.
17.Lin X, Lin Z, Lin D, Lin H, Luo H, Hu Y, Lin C, Zhu C: Preliminary study on Juncao as biomass fuel. Journal of Fujian College of Forestry 2013, 1.
18.Yang L, Fan J, Liu X, Lin Z, Liu B: Effects of grass-substrates on growth and nutrients of ganoderma lucidum. Fujian Journal of Agricultural Sciences 2017, 32(5):508–511.
19.Dong L, Liu H, Zhang J, Yang S, Kong G, Chu JS, Chen N, Wang D: Single-molecule real-time transcript sequencing facilitates common wheat genome annotation and grain transcriptome research. BMC genomics 2015, 16(1):1039.
20.Abdel-Ghany SE, Hamilton M, Jacobi JL, Ngam P, Devitt N, Schilkey F, Ben-Hur A, Reddy AS: A survey of the sorghum transcriptome using single-molecule long reads. Nature communications 2016, 7:11706.
21.Li J, Harata-Lee Y, Denton MD, Feng Q, Rathjen JR, Qu Z, Adelson DL: Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis. Cell discovery 2017, 3:17031.
22.Wang B, Tseng E, Regulski M, Clark TA, Hon T, Jiao Y, Lu Z, Olson A, Stein JC, Ware D: Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing. Nature communications 2016, 7:11708.
23.Von Caemmerer S, Ghannoum O, Furbank RT: C4 photosynthesis: 50 years of discovery and innovation. Journal of experimental botany 2017, 68(2):97.
24.Roberts RJ, Carneiro MO, Schatz MC: The advantages of SMRT sequencing. Genome biology 2013, 14(6):405.
25.Jaiswal S, Antala TJ, Mandavia M, Chopra M, Jasrotia RS, Tomar RS, Kheni J, Angadi U, Iquebal M, Golakia B: Transcriptomic signature of drought response in pearl millet (Pennisetum glaucum (L.) and development of web-genomic resources. Scientific reports 2018, 8(1):3382.
26.Dudhate A, Shinde H, Tsugama D, Liu S, Takano T: Transcriptomic analysis reveals the differentially expressed genes and pathways involved in drought tolerance in pearl millet [Pennisetum glaucum (L.) R. Br]. PloS one 2018, 13(4):e0195908.
27.Zhou S, Wang C, Frazier TP, Yan H, Chen P, Chen Z, Huang L, Zhang X, Peng Y, Ma X: The first Illumina-based de novo transcriptome analysis and molecular marker development in Napier grass (Pennisetum purpureum). Molecular breeding 2018, 38(7):95.
28.Mercer TR, Dinger ME, Mattick JS: Long non-coding RNAs: insights into functions. Nature reviews genetics 2009, 10(3):155.
29.Fatica A, Bozzoni I: Long non-coding RNAs: new players in cell differentiation and development. Nature Reviews Genetics 2014, 15(1):7.
30.Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ: Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nature genetics 2008, 40(12):1413.
31.Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB: Alternative isoform regulation in human tissue transcriptomes. Nature 2008, 456(7221):470.
32.Chen M, Manley JL: Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches. Nature reviews Molecular cell biology 2009, 10(11):741.
33.Filichkin S, Priest HD, Megraw M, Mockler TC: Alternative splicing in plants: directing traffic at the crossroads of adaptation and environmental stress. Current opinion in plant biology 2015, 24:125–135.
34.Laloum T, Martín G, Duque P: Alternative splicing control of abiotic stress responses. Trends in plant science 2018, 23(2):140–150.
35.Moustafa K, AbuQamar S, Jarrar M, Al-Rajab AJ, Trémouillaux-Guiller J: MAPK cascades and major abiotic stresses. Plant cell reports 2014, 33(8):1217–1225.
36.Guo Y, Liu S, Yang Z, Tian S, Sui N: Responses of unsaturated fatty acid in membrane lipid and antioxidant enzymes to chilling stress in sweet sorghum (Sorghum bicolor (L.) Moench) seedling. J Agric Sci 2016, 8(9):71.
37.Shahandashti SSK, Amiri RM, Zeinali H, Ramezanpour SS: Change in membrane fatty acid compositions and cold-induced responses in chickpea. Molecular biology reports 2013, 40(2):893–903.
38.Wasternack C, Hause B: Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany. Annals of botany 2013, 111(6):1021–1058.
39.Wasternack C: Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development. Annals of botany 2007, 100(4):681–697.
40.Fang L, Tong J, Dong Y, Xu D, Mao J, Zhou Y: De novo RNA sequencing transcriptome of Rhododendron obtusum identified the early heat response genes involved in the transcriptional regulation of photosynthesis. PloS one 2017, 12(10):e0186376.
41. Thiel T: MISA—Microsatellite identification tool. Website http://pgrc.ipk-gatersleben de/misa/[accessed 17 June 2016] 2003.
42.Wu TD, Reeder J, Lawrence M, Becker G, Brauer MJ: GMAP and GSNAP for genomic sequence alignment: enhancements to speed, accuracy, and functionality. In: Statistical Genomics. Springer; 2016: 283–334.
43.Alamancos GP, Pagès A, Trincado JL, Bellora N, Eyras E: Leveraging transcript quantification for fast computation of alternative splicing profiles. Rna 2015, 21(9):1521–1531.
44.Hu J, Zhang Y, Wang J, Zhou Y: Glycerol affects root development through regulation of multiple pathways in Arabidopsis. PloS one 2014, 9(1):e86269.
45.Li B and Dewey CN: RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 2011, 12:323.
46.Anders S and Huber W: Differential expression analysis for sequence count data. Genome biology 2010, 11:R106.
47.Storey JD: The positive false discovery rate: a Bayesian interpretation and the q-value. The Annals of Statistics 2003, 31(6), 2013–2035.
48.Wu J, Zhao Q, Yang Q, Liu H, Li Q, Yi X, Cheng Y, Guo L, Fan C, Zhou Y: Comparative transcriptomic analysis uncovers the complex genetic network for resistance to Sclerotinia sclerotiorum in Brassica napus. Scientific reports 2016, 6, 19007.