Neutral molecules, comparison between n(X)c and n(X)o
Energetic comparisons between closed (pyrazolium-olates and related compounds) and open structures [2,4-bis(arylimino)pentan-3-ones and related compounds] are reported in Fig. 7 and Table 1 and the geometries are listed in the Supplementary data.
Table 1 Energies (in kJ·mol–1) of the valence tautomerization between n(X)c and n(X)o. Relative energies to the open structures n(X)o.
R1 = R2
|
R3 = R5
|
X
|
Code c
|
Gas phase M06-2x
|
Gas Phase-CCSD(T)
|
PCM(H2O)-M06-2x
|
|
|
|
|
n(X)c
|
TS
|
n(X)c
|
TS
|
n(X)c
|
TS
|
H
|
H
|
O
|
1(O)c
|
68.1
|
179.5
|
107.6
|
190.9
|
3.1
|
168.1
|
H
|
H
|
S
|
1(S)c
|
19.3
|
155.8
|
67.8
|
168.2
|
–75.3
|
138.8
|
H
|
H
|
Se
|
1(Se)c
|
–4.1
|
142.7
|
56.7
|
163.9
|
–102.2
|
125.6
|
H
|
H
|
NH
|
1(NH)c
|
157.7
|
245.6
|
195.6
|
255.6
|
90.3
|
227.8
|
|
CH3
|
H
|
O
|
2(O)c
|
61.7
|
173.8
|
93.2
|
181.0
|
–2.7
|
156.9
|
CH3
|
H
|
S
|
2(S)c
|
7.3
|
146.8
|
47.2
|
155.6
|
–86.5
|
122.3
|
CH3
|
H
|
Se
|
2(Se)c
|
–16.6
|
133.2
|
35.3
|
152.9
|
–113.6
|
108.3
|
CH3
|
H
|
NH
|
2(NH)c
|
144.9
|
235.5
|
176.6
|
240.8
|
79.6
|
214.3
|
|
CH3
|
CH3
|
O
|
3(O)c
|
46.3
|
156.0
|
74.4
|
159.8
|
–6.7
|
144.7
|
CH3
|
CH3
|
S
|
3(S)c
|
–30.8
|
112.5
|
10.0
|
119.3
|
–108.5
|
99.4
|
CH3
|
CH3
|
Se
|
3(Se)c
|
–57.9
|
97.8
|
–6.1
|
111.6
|
–137.9
|
85.3
|
CH3
|
CH3
|
NH
|
3(NH)c
|
117.4
|
204.3
|
146.1
|
208.7
|
66.0
|
190.8
|
|
CH3
|
C6H5
|
O
|
4(O)c
|
15.8
|
141.2
|
53.1
|
150.4
|
–28.2
|
128.9
|
CH3
|
C6H5
|
S
|
4(S)c
|
–37.5
|
118.2
|
9.2
|
126.3
|
–106.2
|
102.5
|
CH3
|
C6H5
|
Se
|
4(Se)c
|
–61.6
|
105.5
|
–3.4
|
120.2
|
-–132.9
|
90.4
|
CH3
|
C6H5
|
NH
|
4(NH)c
|
72.7
|
175.7
|
111.9
|
188.4
|
41.0
|
173.0
|
|
C6H5
|
CH3
|
O
|
5(O)c
|
64.8
|
160.1
|
78.0
|
153.8
|
23.8
|
188.0
|
C6H5
|
CH3
|
S
|
5(S)c
|
–7.1
|
108.8
|
17.19
|
106.9
|
–66.1
|
97.1
|
C6H5
|
CH3
|
Se
|
5(Se)c
|
–33.8
|
91.3
|
3.4
|
101.6
|
–94.4
|
80.7
|
C6H5
|
CH3
|
NH
|
5(NH)c
|
134.6
|
205.6
|
146.5
|
196.8
|
96.2
|
193.7
|
Several of the 20 values of Table 1 columns are linearly related and the simple linear regression equations, y = a + bx, obtained from these values are reported in Table 2.
Table 2 Statistical analyses of Table 1 data.
y
|
x
|
method
|
intercept a
|
slope b
|
R2
|
Eq.
|
Cyclic minimum
|
TS
|
M06-2x
|
133.6±2.8
|
0.63±0.04
|
0.94
|
1
|
Cyclic minimum
|
TS
|
CCSD(T)
|
114.1±3.5
|
0.68±0.04
|
0.94
|
2
|
Cyclic minimum
|
TS
|
PCM(H2O)
|
159.6±3.8
|
0.54±0.05
|
0.88
|
3
|
Cyclic minimum
|
Cyclic minimum
|
CCSD(T)/M06-2x
|
41.8±2.7
|
0.88±0.04
|
0.97
|
4
|
Cyclic minimum
|
Cyclic minimum
|
PCM(H2O)/M06-2x
|
–71.4±4.9
|
1.14±0.07
|
0.95
|
5
|
TS
|
TS
|
CCSD(T)/M06-2x
|
15.3±6.2
|
0.95±0.04
|
0.97
|
6
|
TS
|
TS
|
PCM(H2O)/M06-2x
|
–11.4±9.2
|
0.99±0.06
|
0.94
|
7
|
The square correlation coefficients are not very good and that is also apparent in the relatively large errors of the coefficients. The first three equations are a consequence of the Hammond postulate, which states that the transition state resembles the structure of the nearest stable species, in this case the cyclic compounds. Equation 4 corresponds to the fact that CCSD(T) calculations increase considerably the differences in stability between open and cyclic structures compared with M06-2x ones. General water solvation stabilizes the mesoionic compounds compared to the neutral open forms due to their high dipole moments (see Supplementary data), equation 5. Equations 6 and 7 have slopes near 1.00; thus, the intercepts can be directly compared; the values are relatively small, +15.3 for the CCSD(T)/M06-2x pair, positive like in equation 4 but lower, and –11.4 for the PCM(H2O)/M06-2x comparison, again similar and lower to that of equation 5.
The solvent effect produces an elongation of the N-N distance in the TS between 0.03 and 0.12 Å (see Supplementary data, Table S2).
A clear relationship is found between the energetic values of the TS structures in gas phase and their N-N distances as can be observed in Fig. 8. The shorter the N-N distance in the TS, the larger is the barrier. Linear correlations between these two parameters show R2 values larger than 0.98 for each family of compounds (1-5) and a R2 value of 0.92 considering all the points together. A linear correlation is only the simplest model, for instance, a second order polynomial affords an R2 = 0.936. A similar relationship is obtained when the values in PCM(H2O) are considered (see Supplementary data, Fig. S1):
The analysis of the electron density of the structures within the QTAIM methodology [45] shows the presence of a bcp between the nitrogens involved in the reaction in the closed and TS structures but not in the open ones. The ρBCP in the closed structures range between 0.387 and 0.331 au with negative values of ∇2ρBCP and HBCP that are large. In contrast, the ρBCP for the TS structures range between 0.175 and 0.071 au with positive values of ∇2ρBCP and negative values of HBCP as indication of partial covalent character of this contact in the TS [46].
The IRCs (Intrinsic Reaction Coordinate) of some selected transformations have been calculated. Using these values, the reaction force profile along the reaction has been derived. One example is given in Fig. 9. The reaction force divides the IRC in three regions: i) for the reactant to the minimum (ξ1) which is associated to structural reordering, ii) from ξ1 to the maximum ξ2 where the electronic variation dominates and iii) between ξ2 and the products that corresponds to a structural relaxation. It should be noted that the TS (ξTS) is located between ξ1 and ξ2 allowing to divide the reaction in four regions. Table 3 shows the energetic values between the critical points in the IRC and reaction force along the reaction coordinate for some of the reactions. The structural reorderings (W1 and W4) are larger in the processes of reaching the TS from the products and the reactants than the electronic reorganization (W2 and W3). Good linear correlations (R2 > 0.96) of each term with the corresponding TS have been obtained when the two families (1 and 3) are considered separately.
Table 3 Energy decomposition (kJ·mol–1) using the reaction coordinate and the reaction force critical points.
|
|
|
|
W1
|
W2
|
W3
|
W4
|
R1 = R2
|
R3 = R5
|
X
|
Code c
|
R→ξ1
|
ξ1→ξTS
|
ξTS→ξ2
|
ξ2→P
|
H
|
H
|
O
|
1(O)c
|
59.4
|
51.9
|
–61.1
|
–118.4
|
H
|
H
|
S
|
1(S)c
|
72.8
|
63.6
|
–50.6
|
–105.5
|
H
|
H
|
Se
|
1(Se)c
|
78.7
|
68.2
|
–44.8
|
–97.9
|
H
|
H
|
NH
|
1(NH)c
|
49.0
|
38.9
|
–97.5
|
–48.1
|
|
|
|
|
|
|
|
|
CH3
|
CH3
|
O
|
3(O)c
|
70.7
|
41.0
|
–28.0
|
–145.6
|
CH3
|
CH3
|
S
|
3(S)c
|
88.7
|
51.0
|
–26.4
|
–120.5
|
CH3
|
CH3
|
Se
|
3(Se)c
|
96.2
|
53.6
|
–25.9
|
–107.5
|
CH3
|
CH3
|
NH
|
3(NH)c
|
59.4
|
31.4
|
–37.2
|
–173.6
|
Protonated molecules, comparison between n(X)cH+ and n(X)oH+/n(X)o'H+
Se situation for cations is much more complex than in neutral molecules because instead of two minima now they are five. In Fig. 10 are represented the five minima of protonated structures and in Table 4 the corresponding energy results.
In Table 4 are reported the same results as in Section 2.1. for protonated species but only for X = O, the remaining X groups are reported in the Supplementary data. Here the most stable is the cyclic compound and no longer the open compound like in neutral molecules. Note that open compounds a and c are related by a proton transfer, while structure d present a new N–H···N HB.
Table 4 Energies (in kJ·mol–1) of the valence tautomerization between n(O)cH+ and n(O)oH+ (open a and open d); the TS-co correspond to the ring opening of the closed structure to yield the open compound of type a. Relative energies to the cyclic n(O)cH+ structures.
Code
|
Gas phase M06-2x
|
Gas Phase-CCSD(T)
|
PCM(H2O)-M06-2x
|
|
n(O)oH+
open a
|
n(O)oH+
open d
|
TS-co
|
n(O)oH+
open a
|
n(O)oH+
open d
|
TS-co
|
n(O)oH+
open a
|
n(O)H+
open d
|
TS-co
|
1(O)H+
|
204.0
|
75.1
|
258.2
|
163.4
|
29.1
|
219.0
|
203.5
|
76.0
|
271.0
|
2(O)H+
|
196.5
|
75.9
|
246.0
|
172.4
|
36.4
|
218.7
|
196.3
|
71.9
|
253.8
|
3(O)H+
|
209.0
|
60.1
|
247.4
|
185.0
|
29.8
|
220.4
|
205.0
|
61.2
|
253.0
|
4(O)H+
|
200.9
|
77.0
|
242.0
|
168.8
|
44.3
|
211.6
|
206.9
|
77.0
|
252.1
|
5(O)H+
|
185.9
|
55.1
|
194.6
|
189.6
|
45.7
|
187.7
|
134.7
|
49.0
|
198.2
|
There are five minima and four TS. TS-co corresponds to the N-N bond breaking, TS-ab to the rotation about a CC single bond, TS-bc to a intramolecular proton transfer between X and N, and TS-cd to a second rotation about a CC single bond. In the case of X = O, these barriers (from left to right, Fig. 11a) correspond to 246.0, 12.9, 7.7 and 27.3 kJ·mol–1. The direct migration of a proton between a and d being too far away cannot take place without the assistance of water or solvent molecules or counterions.
There are two groups of structures, before proton transfer, a and b, and after proton transfer, c and d. Taking into account that some b structures have not been localized because they evolve spontaneously to type c structures, b is always more stable than a (mean = 39.6 kJ·mol–1, extreme values 6.5 kJ·mol–1, 4(Se)H+ and 55.5 kJ·mol–1, 5(O)H+; even for 4(NH)H+ the differences is much lower, 13.0 kJ·mol–1, respectively than the mean (see Table S5).
The different character of 4 series is probably due to a hydrogen bond between the acidic OH and the adjacent N atom (Fig. 12); the three other X+–H groups are less acidic, NIST gas basicity values in kJ·mol–1 H2O (660.0), H2S (673.8), H2Se (676.4) and H3N (819.0) [47].
After proton transfer, d is always more stable than c due to the very favorable structure for a strong hydrogen bond, pseudo-six membered ring. The mean value is small than in the preceding case (10.4 kJ·mol–1).
Statistical analyses of Table 4 data similar to those of Table 2 are much more complicated due to the existence of four open cations. Only the correlation relating the TSs calculated by two methods was acceptable (Table 5)
Table 5 Statistical analyses of Table S5 data. The corresponding data for neutrals from Table 2 has been added for comparison.
Comp.
|
y
|
x
|
method
|
intercept a
|
slope b
|
R2
|
Eq.
|
cations
|
TS
|
TS
|
CCSD(T)/M06-2x
|
25.1±18.1
|
0.79±0.08
|
0.86
|
8
|
neutrals
|
TS
|
TS
|
CCSD(T)/M06-2x
|
15.3±6.2
|
0.95±0.04
|
0.97
|
6
|
When the four profiles of Fig. 11, illustrated for the a series, are compared it appear that those of X = O (Fig. 11a), X = S (Fig. 11b) and X = Se (Fig. 11c) are similar but that of X = NH (Fig. 11d) is different. A closer look indicated that the amino profile has two parts both similar to the other profiles but different between them (Fig. 13).
The three values of the left side (blue) and the two values of the right side (red) are correlated with the black values of the 2(O)oH+ series: 2(NH)oH+ = (1.07±0.07) 2(O)oH+ – (68±13) , n = 5, R2 = 0.9995; The value –68 kJ·mol–1 corresponds to the difference between both sides, the red minus the blue, and it is related to the much larger basicity of NH compared with that of O (see previously NIST data [47]).
To estimate protonation effects, i.e., the basicity of the compounds of Table 1, the latter and Table 4 and Supplementary data should be compared; some relationships could be found. For instance for the M06-2x calculations between n(X)oH+ type c = (188.6±3.5) – (0.63±0.04) n(X)c – (101.6±6.3) b series, = 20, R2 = 0.98 (eq. 10). Equation 10 shows the energetic difference between the a (0) and the b (1) series, the b series being in average 102 kJ·mol–1 more stable than the a series.
The TS ring opening show barriers bigger than in the neutral systems and N-N distance systematically larger (0.35 Å in average) in the protonated ones. As in the cases, of the neutral systems, linear correlations are obtained between the barriers and the interatomic N-N distances for each family of compounds with R2 > 0.97.
The analysis of the electron density between both nitrogen atoms in the TS(c-o) shows a BCP like in the case of the neutral molecules. The representation of rBCP and Ñ2rBCP vs. the interatomic N-N distance for all the closed and TS(c-o) complexes (neutral and protonated) is shown in Fig. 14. The rBCP values follow an almost perfect exponential relationship with the distance in agreement with previous reports for covalent and non-covalent interactions [48,49,50,51]. The figure with Ñ2rBCP shows the changing nature of the bond. Negative values are obtained for covalent N-N bonds in the closed systems while the positive values are obtained for the TSs but at the shortest distances they tend towards negative values.
The IRC analysis of the ring opening through the TS-co for molecules 1 and 3, Table 6, show that in the latter ones, 3(O)H+ and 3(S)H+, the structural reordering (W1 and W4) is larger in absolute value than the corresponding electronic reorganization (W2 and W3) in analogy to what was observed for the neutral systems. In contrast, 1(O)H+ and 1(S)H+ shows a larger electronic reorganization W2 than the geometrical reordering W1.
Table 6 IRC analysis of the ring opening through the TS-co for molecules 1 and 3.
|
|
|
|
W1
|
W2
|
W3
|
W4
|
R1 = R2
|
R3 = R5
|
X
|
Code c
|
R→ξ1
|
ξ1→ξTS
|
ξTS→ξ2
|
ξ2→P
|
H
|
H
|
O
|
1(O)cH+
|
119.7
|
138.5
|
–21.8
|
–32.6
|
H
|
H
|
S
|
1(S)cH+
|
122.2
|
141.8
|
–18.0
|
–27.2
|
|
|
|
|
|
|
|
|
CH3
|
CH3
|
O
|
3(O)cH+
|
142.7
|
102.9
|
–13.8
|
–36.0
|
CH3
|
CH3
|
S
|
3(S)cH+
|
149.4
|
109.2
|
–11.3
|
–26.4
|
Comparison with geometries calculated and experimental X-ray data
Unfortunately there are no experimental geometries of 1H-pyrazol-2-ium-4-olates and related compounds (CSD) [52]. However, of the structures reported in Table 5 that of compound 16 has been determined (COPLAV) [53] and COPLAV01 [54]), this compound is related to 5(O)o but the presence of two i-propyl at positions 2 and 6 of the phenyl rings should modify the conformation (Fig. 15).
The calculated structure has a symmetry axis (C2) that is lost in the experimental structures that are different; the main difference between experimental and calculated geometries concerns one of the OCCN angles that are rotated to values (105.3 and 76.6º) much lower than the other N-phenyl group (169.6 and 176.2º) and to our calculated angles (178.0º).