da Costa, M. S. & Rainey, F. A. (2009). Family II. Alicyclobacillaceae fam. nov. In Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 3, p. 229. Edited by P. De Vos, G. Garrity, D. Jones, N. R. Krieg, W. Ludwig, F. A. Rainey, K. H. Schleifer & W. B. Whitman. New York: Springer.
Wisotzkey, J. D., Jurtshuk, P., Jr, Fox, G. E., Deinhard, G. & Poralla, K. (1992). Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol 42: 263–269.
Glaeser, S. P., Falsen, E., Martin, K. & Ka¨ mpfer, P. (2013). Alicyclobacillus consociatus sp. nov., isolated from a human clinical specimen. Int J Syst Evol Microbiol 63: 3623–3627.
Steven, B., Chen, M. Q., Greer, C. W., Whyte, L. G. & Niederberger T. D. (2008). Tumebacillus permanentifrigoris gen. nov., sp. nov., an aerobic, spore-forming bacterium isolated from Canadian high Arctic permafrost. Int J Syst Evol Microbiol 58: 1497–1501.
Klenk, H.-P., Lapidus, A., Chertkov, O., Copeland, A., Del Rio, T. G., Nolan, M., Lucas, S., Chen, F., Tice, H. & other authors (2011). Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Stand Genomic Sci 5: 121–134.
Bonjour, F. & Aragno, M. (1984). Bacillus tusciae, a new species of thermoacidophilic, facultatively chemolithotrophic, hydrogen oxidizing sporeformer from a geothermal area. Arch Microbiol 139: 397– 401.
Reiner JE, Jung T, Lapp CJ, Siedler M, Bunk B, Overmann J, Gescher J. (2018) Kyrpidia spormannii sp. nov., a thermophilic, hydrogen-oxidizing, facultative autotroph, isolated from hydrothermal systems at Sao Miguel Island, and emended description of the genus Kyrpidia. Int J Syst Evol Microbiol 68: 3735-3740.
Imperio, T., Viti, C. & Marri, L. (2008). Alicyclobacillus pohliae sp. nov., a thermophilic, endospore-forming bacterium isolated from geothermal soil of the north-west slope of Mount Melbourne (Antarctica). Int J Syst Evol Microbiol 58: 221–225.
Watanabe M, Kojima H, Fukui M. (2014) Proposal of Effusibacillus lacus gen. nov., sp. nov., and reclassification of Alicyclobacillus pohliae as Effusibacillus pohliae comb. nov. and Alicyclobacillus consociatus as Effusibacillus consociatus comb. nov. Int J Syst Evol Microbiol 64: 2770-2774.
Barrow G.I. and Feltham, R.K.A. (1993). Cowan and Steel's Manual for the Identification of Medical Bacteria. 3rd edition. Cambridge: University Press.
Widdel, F. & Bak, F. (1992). Gram-negative mesophilic sulfatereducing bacteria. In The Prokaryotes, 2nd edn, vol. 4, pp. 3352–3378. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100: 221–230.
Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP 18) and a silver loaded ion exchanger as stationary phases. J Liquid Chromatogr 5: 2359–2387.
Minnikin DE, Collins MD, Goodfellow M. (1979) Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47: 87–95.
Sasser M. (1990) Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids. Newark, DE: MIDI Inc.
Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. (2017) Introducing EzBioCloud: a taxonomically United database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 67: 1613–1617
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876–4882.
Saitou N, Nei M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406–425.
Felsenstein J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368–376.
Fitch WM. (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20: 406–416.
Kumar S, Stecher G, Li M, Knyaz C, Tamura K. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution 35: 1547-1549
Felsenstein J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.
Alanjary M, Steinke K, Ziemert N. (2019) AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential. Nuc Acids Res 47: W276–W282.
Meier-Kolthoff JP, Auch AF, Klenk HP, Goker M. (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14: 60.
Wayne LG, Moore WEC, Stackebrandt E, Kandler O, Colwell RR et al. (1987) Report of the AD hoc Committee on reconciliation of approaches to bacterial Systematics. Int J Syst Evol Microbiol 37: 463–464
Yoon SH, Ha SM, Lim J, Kwon S, Chun J. (2017) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie van Leeuwenhoek 110: 1281-1286
Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. (2007) DNA–DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 57: 81–91
Farris JS. (1972) Estimating phylogenetic trees from distance matrices. Am Nat. 106: 645–667.