2.1 Bioinformatics analysis
Data, required for bioinformatics analysis, were downloaded from the GEO (GSE14520 and GSE50579) and TCGA-LIHC databases. R software (version 3.5.1) and its packages were employed to analyze these data. AHSA1-related genes (|R > 0.5|, p < 0.001) in TCGA-LIHC were identified and used for functional and pathway enrichment analyses including the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway and Gene Ontology (GO).
2.2 Antibodies
AHSA1, N-cadherin, 6-his, vimentin, HSP90, MEK1/2, E-cadherin, and CALD1 antibodies were obtained from Proteintech (Wuhan, China). ERK1/2, Phospho-MEK1/2, and Phospho-ERK1/2 antibodies were obtained from Cell Signaling Technology (Beverly, Massachusetts, USA). Ki67 antibody was obtained from Abcam (Cambridge, Massachusetts, USA). Phospho-CALD1 antibody was purchased from Thermo Fisher Scientific (Waltham, MA, USA). β-tubulin antibody was obtained from Bioworld Technology (Bloomington, MN, USA).
2.3 Cell culture and transfection
The HCC cell lines, PLC/PRF/5, HCCLM3, Huh-7, Hep3B, and HepG2, and the control liver epithelial cell line, LO2, were purchased from Zhong Qiao Xin Zhou Biotechnology (Shanghai, China). The cells were inoculated into culture dishes purchased from Guangzhou Jet Biofiltration (Guangzhou, China) and added to Dulbecco's Modified Eagle's Medium (DMEM) containing 10% fetal bovine serum to maintain growth. The growth environment temperature was maintained at 37°C with 5% CO2. The overexpression plasmid pcDNA3.1-AHSA1, empty vector pcDNA3.1, shRNAs targeting AHSA1, and sh-control were purchased from OBiO Technology (Shanghai, China). The sequences of shRNAs targeting AHSA1 and sh-control were as follows: sh-AHSA1-1, GCATGATCTTACCTACAAT; sh-AHSA1-2, CCATCACCTTGACCTTCAT; sh-control, CCTAAGGTTAAGTCGCCCTCG. The siRNAs targeting CALD1 and si-NC were obtained from RIBOBIO (Guangzhou, China). The sequences of siRNAs targeting CALD1 were as follows: si-CALD1-1, AGAGCTTCATGGATCGAAA; si-CALD1-2, GTACGCAACATCAAG AGTA; si-CALD1-3, GAAGGAGTTCGACCCAACA. Lipofectamine 3000 (Thermo Scientific, Waltham, MA, USA) was used for conventional cell transfection for 72 h. AHSA1 expression was detected by western blotting.
2.4 Immunohistochemistry (IHC)
Referring to the manufacturer’s instructions, the IHC detection kit (PV-9000)(ZsBio, Beijing, China), was used to assess the expression of AHSA1 in the HCC tissue arrays (HLivH180Su15)(Shanghai Outdo Biotech Company, Shanghai, China). The IHC score was obtained by determining the intensity of staining and the positive area (intensity score + area score) and described by the following rules: scores between 0 and 6 represented low expression, and those > 6 were considered high expression.
2.5 Total RNA extraction and Real-Time PCR
By means of the total RNA isolation kit (Foregene, Chengdu, China) and the PrimeScript RT kit (Takara Biomedical Technology, Beijing, China), RNA was extracted from the cells and reverse transcribed into DNA. Referring to the operation manual of the LightCycler480 system (Roche, Basel, Switzerland), DNA was added into the 8-tube system containing primers and TB Green Premix Ex TaqII(Takara Biomedical Technology, Beijing, China) to conduct Real-Time PCR. DNA expression was standardized to the expression of β-actin, and the relative expression level was calculated using 2–ΔΔCt. The primer sequences included: AHSA1: (forward) 5'-GGCACTAAGCGGTCCTGAG-3', (reverse) 5'-CTCCACT TCATCCACGCTGT-3'; β-actin: (forward) 5'-AGAAGGATTCCTATGG GCGAC-3', and (reverse) 5'–AGTACTTGCGCTCA GGAGGA-3 '.
2.6 Western blotting, coimmunoprecipitation (Co-IP) assay, and mass spectrometer (MS) assay
In a brief, protein samples were separated on 10% pre-gel and transferred to a polyvinylidene fluoride(PVDF) membrane. Via using 5% BSA at 37°C for 1 h, the bands were blocked and incubated with a primary antibody at 37°C for 2h. After 3 cleanings through using TBST, the band was incubated with a secondary antibody on a shaker at 37°C for 1.5 h. Via the MiniChemi chemiluminescence imaging and analysis system (Sage Creation Science, Beijing, China), the special protein bands of the membrane became visible on the computer screen after spraying enhanced chemiluminescence reagents from Millipore (Billerica, MA, USA). HCC cell protein samples were coimmunoprecipitated using the Pierce Co-IP kit (Thermo Scientific, Waltham, MA, USA), and the target protein that corresponded to the cured antibody and its stable binding protein were obtained, and the final special protein samples were analyzed by Western blotting. For the MS assay, the protein sample obtained from the Co-IP experiment contained proteins interacting with AHSA1, and 8M urea was used to supplement the volume of the protein sample to 200ul. Next, the sample was added with a final concentration of 2mM DTT, reacted in an incubator at 56 ℃ for 30 min, and cooled to room temperature. The sample was added with a final concentration of 10mM IAA and reacted at room temperature for 30 min. Then, the sample was added to a 10KD protein ultrafiltration tube and centrifuged (14000g, 30min), washed three times by using ammonium bicarbonate solution, and then digested by trypsin (37 ℃, 12 hours). Finally, the sample was washed with water for mass spectrometry, centrifuged (14000g, 20min), dried, and analyzed by one mass spectrometer (Thermo Scientific™ Orbitrap Fusion™ Tribrid™, American). The original data was compared with the data in the UniProt database.
2.7 EdU assay
An EdU proliferation test was conducted using the in vitro Cell-Light EdU Apollo 567 imaging kit (RiboBio, Guangzhou, China). In brief, after transfection with a plasmid for 72 h or transduction with lentivirus, HCC cells were seeded in 96-well plates (2x104 cells/well) and stained with EdU. The figures of EdU positive cells (red) in three random observation fields were captured via an inverted fluorescence microscope (Olympus, Beijing, China).
2.8 Clone formation experiment
Cell population dependence and proliferation were evaluated using a cell cloning experiment. In brief, cells, HepG2 and HCCLM3, receiving transduction of AHSA1 knock-down lentivirus or control lentivirus, were evenly distributed at the bottom of 6-well plates (500 cells/well). After the cells were incubated for three weeks. The cells were then infiltrated with paraformaldehyde for 60 min and stained with crystal violet (0.1% methanol) for 20 min. Finally, the number of clones was calculated.
2.9 Cell Counting Kit 8 (CCK-8) assay
Hep3B cells were evenly inoculated in 96-well plates (2,000 cells/well), and the corresponding SCH772984 (Selleck Chemicals, Shanghai, China) was added via the concentration gradient. CCK-8 (Dojindo Laboratories, Mashikimachi, Japan) was used two hours before and the absorbance of the sample in the hole at 450 nm was measured at 24, 48, and 72 h.
2.10 Cell wound healing, migration, and invasion assays
To conduct the cell wound healing test, cells were added to a six-well plate, the tip of a 1 ml pipette was used to make scratches, and cell migration across the gaps was observed via a microscope at 0, 24, 48, and 72 h. For the Transwell experiment, the suspended cells in DMEM without serum were inoculated in the chamber (the aperture of the basement membrane was 8.0 mm, 1×105 cells/chamber), and placed in a 24-well plate. The corresponding wells were supplemented with DMEM containing 20% serum and incubated for 24 h. Cells were removed which did not enter the basement membrane, and the membrane was placed in paraformaldehyde for cell immobilization. The membrane was then dyed with crystal violet solution (0.1% methanol) for 20 min. Positive cells on the membrane (purple) were counted using three fields of vision. For the invasion experiment, a matrix gel (Corning, China) was diluted referring to the manufacturer’s instructions, and evenly spread on the surface of the membrane. Cells, suspended in DMEM without serum, were inoculated in the chamber (the aperture of the basement membrane was 8.0 mm, 1x105 cells/chamber), and placed in a 24-well plate. DMEM with 20% serum was supplemented to the corresponding well of each chamber. After 24 h, Cells were removed which did not enter the basement membrane, and the membrane was placed in paraformaldehyde for cell immobilization. The membrane was then dyed in crystal violet solution (0.1% methanol) for 20 min. Positive cells on the membrane (purple) were counted using three fields of vision.
2.11 Subcutaneous model of nude mice
According to the international animal care and maintenance regulations, the mouse experiment was conducted and was approved by the Experimental Animal Ethics Committee, Guilin Medical University. In short, 2.5×106 HCCLM3 cells with knocked-down AHSA1 or control lentivirus were used to inject into the posterior right lateral thigh of nude mice(male, bodyweight: ~19 g, 6 weeks) (Hunan SJA laboratory animals, Hunan, China). The mice were euthanized on day 17 to evaluate tumor size. All tumor tissues were observed and photographed through a microscope (Olympus, Beijing, China). Each tumor tissue specimen was then fixed with formalin, embedded in paraffin, and H&E and HRP-DAB immunohistochemical staining were performed.
2.12 Nude mouse lung metastasis model
In brief, 1×106 cells/80µl AHSA1 knock-down or empty vector control HCCLM3 cells were intravenously injected into the tail vein of nude mice. Lung metastasis model mice were euthanized on day 58 to evaluate the number of tumors. All lung tissues were observed and photographed through a microscope (Olympus, Beijing, China). Each lung tissue specimen was fixed with formalin, embedded in paraffin, and H&E and HRP-DAB immunohistochemical staining were performed.
2.13 Statistical analysis
Student T-tests were used for analysis. The relationship between AHSA1 expression and patient clinical and prognostic characteristics was analyzed by χ2 or Fisher's exact tests. OS and DFS were calculated by log-rank test. All statistical results are expressed as the mean ± standard error by GraphPad Prism6 (San Diego, CA, USA) and met the conditions of a bilateral test. Each non-animal experiment was repeated in three independent experiments.