[1]Isaacson T, Damasceno C M B, Saravanan R S, He Y, Catalá C, Saladié M, Rose J K, Sample extraction techniques for enhanced proteomic analysis of plant tissues. Nat Protoc 2006, 1, 769-74.
[2]O'Farrell P H, High resolution two-dimensional electrophoresis of proteins. J Biol Chem 1975, 250, 4007-21.
[3]Görg A, Weiss W, Dunn M J, Current two-dimensional electrophoresis technology for proteomics. Proteomics 2004, 4, 3665-3685.
[4]Fenn J B, Mann M, Meng C K, Wong S F, Whitehouse C M, Electrospray ionization for mass spectrometry of large biomolecules. Science 1989, 246, 64-71.
[5]Jiang Z, Kumar M, Padula M P, Pernice M, Kahlke T, Kim M, Ralph P J, Development of an Efficient Protein Extraction Method Compatible with LC-MS/MS for Proteome Mapping in Two Australian Seagrasses Zostera muelleri and Posidonia australis. Front Plant Sci 2017, 8, 1416.
[6]Giribaldi M, Perugini I, Sauvage F X, Schubert A, Analysis of protein changes during grape berry ripening by 2-DE and MALDI-TOF. Proteomics 2007, 7, 3154-70.
[7]Lee D Y, Kind T, Yoon Y R, Fiehn O, Liu K H, Comparative evaluation of extraction methods for simultaneous mass-spectrometric analysis of complex lipids and primary metabolites from human blood plasma. Anal Bioanal Chem 2014, 406, 7275-86.
[8]Hesselager M O, Codrea M C, Bendixen E, Evaluation of preparation methods for MS-based analysis of intestinal epithelial cell proteomes. Proteomics 2015, 15, 2350-7.
[9]Maldonado A M, Echevarría-Zomeño S, Jean-Baptiste S, Hernández M, Jorrín-Novo J V, Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome analysis by two-dimensional electrophoresis. J Proteomics 2008, 71, 461-72.
[10]Zhen Y, Shi J, Evaluation of sample extraction methods for proteomic analysis of coniferous seeds. Acta Physiol Plant 2011, 33, 1623-1630.
[11]Wongpia A, Mahatheeranont S, Lomthaisong K, Niamsup H, Evaluation of Sample Preparation Methods from Rice Seeds and Seedlings Suitable for Two-Dimensional Gel Electrophoresis. Appl Biochem and Biotech 2015, 175, 1035-1051.
[12]Saravanan R S, Rose J K C, A critical evaluation of sample extraction techniques for enhanced proteomic analysis of recalcitrant plant tissues. Proteomics 2004, 4, 2522-32.
[13]Wang W, Tai F, Chen S, Optimizing protein extraction from plant tissues for enhanced proteomics analysis. J Sep Sci 2008, 31, 2032-9.
[14]Wang W, Scali M, Vignani R, Spadafora A, Sensi E, Mazzuca S, Cresti M, Protein extraction for two-dimensional electrophoresis from olive leaf, a plant tissue containing high levels of interfering compounds. Electrophoresis 2003, 24, 2369-2375.
[15]Kersten B, Bürkle L, Kuhn E J, Giavalisco P, Konthur Z, Lueking A, Walter G, Eickhoff H, Schneider U, Large-scale plant proteomics. Plant Mol Biol 2002, 48, 133-141.
[16]Li D J, Deng Z, Chen C L, Chen S C, Research Progress on Protein Extraction from Plant Tissues for Two-dimensional Gel Electrophoresis. Chinese Agricultural Science Bulletin 2009, 24, 78-82.
[17]Laing W, Christeller J, Extraction of proteins from plant tissues. Curr Protoc Protein Sci 2004, 4, Unit 4-7.
[18]Wang W, Vignani R, Scali M, Cresti M, A universal and rapid protocol for protein extraction from recalcitrant plant tissues for proteomic analysis. Electrophoresis 2006, 27, 2782-2786.
[19]Wu X, Xiong E, Wang W, Scali M, Cresti M, Universal sample preparation method integrating trichloroacetic acid/acetone precipitation with phenol extraction for crop proteomic analysis. Nat Protoc 2014, 9, 362-74.
[20]Canovas F M, Dumas-Gaudot E, Recorbet G, Jorrin J, Mock H P, Rossignol M, Plant proteome analysis. Proteomics 2004, 4, 285-98.
[21]Jorrin J.V, Maldonado A M, Castillejo M A, Plant proteome analysis: a 2006 update. Proteomics 2007, 7, 2947-62.
[22]Agrawal G K, Jwa N, Iwahashi Y, Yonekura M, Iwahashi H, Rakwal R, Rejuvenating rice proteomics: Facts, challenges, and visions. Proteomics 2006, 6, 5549-5576.
[23]Rose J K C, Bashir S, Giovannoni J J, Jahn M M, Saravanan R, Subramanian, Tackling the plant proteome: practical approaches, hurdles and experimental tools. The Plant Journal 2004, 39, 715-733.
[24]Timperio A M, Egidi M G, Zolla L, Proteomics applied on plant abiotic stresses: role of heat shock proteins (HSP). J Proteomics 2008, 71, 391-411.
[25]Damerval C, de Vienne D, Zivy M, Thiellement H, Technical improvements in two-dimensional electrophoresis increase the level of genetic variation detected in wheat-seedling proteins. Electrophoresis 1986, 7, 52-54.
[26]Rabilloud T, Use of thiourea to increase the solubility of membrane proteins in two-dimensional electrophoresis. Electrophoresis 1998, 19, 758-60.
[27]Santoni V, Bellini C, Caboche M, Use of two-dimensional protein-pattern analysis for the characterization of Arabidopsis thaliana mutants. Planta 1994, 192, 557-566.
[28]Benesˇova´ M, Hola´ D, Fischer L, Jedelsky´ P L, Hnilicˇka F, Wilhelmova´ N, Rothova´ O, Kocˇova´ M, Procha´zkova´ D, Honnerova´ J, Fridrichova´ L, Hnilicˇkova´ H, The physiology and proteomics of drought tolerance in maize: early stomatal closure as a cause of lower tolerance to short-term dehydration? Plos One 2012, 6, e38017.
[29]Amiour N, Imbaud S, Clement G, Agier N, Zivy M, Valot B, Balliau T, Armengaud P, Quillere I, Canas R, Tercet-Laforgue T, Hirel B, The use of metabolomics integrated with transcriptomic and proteomic studies for identifying key steps involved in the control of nitrogen metabolism in crops such as maize. J Exp Bot 2012, 63, 5017-33.
[30]Vilhena M B, Franco M R, Schmidt D, Carvalho G, Azevedo R A, Evaluation of protein extraction methods for enhanced proteomic analysis of tomato leaves and roots.
Anais da Academia Brasileira de Ciências 2015, doi.org/10.1590/0001-3765201520150116.
[31]Al-Obaidi J R, Saidi N B, Usuldin S R A, Hussin S N I, Said, Yusoff N M, Idris A S, Comparison of Different Protein Extraction Methods for Gel-Based Proteomic Analysis of Ganoderma spp. Protein J 2016, 35, 100-106.
[32]Vincent D, Wheatley M D, Cramer G R, Optimization of protein extraction and solubilization for mature grape berry clusters. Electrophoresis 2006, 27, 1853-1865.
[33]Hurkman W J, Tanaka C K, Solubilization of plant membrane proteins for analysis by two-dimensional gel electrophoresis. Plant Physiol 1986, 83, 802-6.
[34]Carpentier S C, Witters E, Laukens K, Deckers P, Swennen R, Panis B, Preparation of protein extracts from recalcitrant plant tissues: An evaluation of different methods for two-dimensional gel electrophoresis analysis. Proteomics 2005, 5, 2497-507.
[35]Pang X H, Zhang Y, Huang G D, Huang Q, Comparison of protein extraction methods from leaves inClausena lansium. Noonwood Forest Reaearch 2017, 35, 59-63.
[36]Zhang Y, Xu L, Zhu X, Gong X, Xiang F, Sun X, Liu L, Proteomic Analysis of Heat Stress Response in Leaves of Radish (Raphanus sativus L.). Plant Mol Biol Rep 2013, 31, 195-203.
[37]Xiang X, Ning S, Jiang X, Gong X, Zhu R, Zhu L, Wei D, Protein extraction from rice (Oryza sativa L.) root for two-dimensional electrophoresis. Frontiers of Agriculture in China 2010, 4, 416-421.
[38]Sheoran I S, Ross A R S, Olson D J H, Sawhney V K, Compatibility of plant protein extraction methods with mass spectrometry for proteome analysis. Plant Sci 2009, 176, 99-104.
[39]Soundararajan P, Manivannan A, Ko C H, Jeong B R, Silicon Enhanced Redox Homeostasis and Protein Expression to Mitigate the Salinity Stress in Rosa hybrida ‘Rock Fire’. J Plant Growth Regul 2017, DOI 10.1007/s00344-017-9705-7.
[40]Yang P, Chen H, Liang Y, Shen S, Proteomic analysis of de-etiolated rice seedlings upon exposure to light. Proteomics 2007, 7, 2459–2468.
[41]Jagadish S, Craufurd P Q, Wheeler T R, High temperature stress and spikelet fertility in rice (Oryza sativa L.). J Exp Bot 2007, 58, 1627-1635.
[42]Cao Y, Duan H, Yang L, Wang Z, Zhou S, Yang J, Effect of Heat Stress During Meiosis on Grain Yield of Rice Cultivars Differing in Heat Tolerance and Its Physiological Mechanism. Acta Agronomica Sinica 2008, 34, 2134-2142.
[43]Yang J, Chen X, Zhu C, Peng X, He X, Fu J, Ouyang L, Bian J, Hu L, Sun X, Xu J, He H, RNA-seq reveals differentially expressed genes of rice (Oryza sativa) spikelet in response to temperature interacting with nitrogen at meiosis stage. BMC Genomics 2015, 16, 959.
[44]Endo M, Tsuchiya T, Hamada K, Kawamura S, Yano K, Ohshima M, Higashitani A, Wanatabe M, Kawagishi-Kobayashi M, High Temperatures Cause Male Sterility in Rice Plants with Transcriptional Alterations During Pollen Development. Plant Cell Physiol 2009, 50, 1911-1922.
[45]Kim S T, Cho K S, Jang Y S, Kang K Y, Two-dimensional electrophoretic analysis of rice proteins by polyethylene glycol fractionation for protein arrays. Electrophoresis 2001, 22, 2103-2109.
[46]Bradford M, A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72, 248-254.
[47]Liao J, Huang Y, Genomics, Evaluation of Protocols Used in 2-D Electrophoresis for Proteome Analysis of Young Rice Caryopsis. Proteomics and Bioinformatics 2011, 9, 229-237.
[48]Liao J, Zhou H, Zhang H, Zhong P, Huang Y, Comparative proteomic analysis of differentially expressed proteins in the early milky stage of rice grains during high temperature stress. J Exp Bot 2014, 65, 665-671.
[49]Zhang H, Lei G, Zhou H, He C, Liao J, Huang Y, Quantitative iTRAQ-based proteomic analysis of rice grains to assess high night temperature stress. Proteomics 2017, 17, 1600365.
[50]Yang Q, Wang Y, Zhang J, Shi W, Qian C, Peng X, Identification of aluminum-responsive proteins in rice roots by a proteomic approach: Cysteine synthase as a key player in Al response. Proteomics 2007, 7, 737-749.
[51]Nisha S, Neha J, Ram K, Ajay J, Nagendra K S, Vandna R, A Comparative Method for Protein Extraction and 2-D Gel Electrophoresis From Different Tissues of Cajanus Cajan. Front Plant Sci 2015, 6, 606.
[52]Olson B J, Markwell J, Assays for determination of protein concentration. Curr Protoc Pharmacol 2007, Appendix 3: 3A.
[53]Ellis R J, The most abundant protein in the world. North-Holland Biomedical press, 1979.
[54]Meyer Y, Grosset J, Chartier Y, Cleyet-Marel J C, Preparation by two-dimensional electrophoresis of proteins for antibody production: antibodies against proteins whose synthesis is reduced by auxin in tobacco mesophyll protoplasts. Electrophoresis 1988, 9, 704-12.
[55]Rodrigues S P, Ventura J A, Zingali R B, Fernandes P M B, Evaluation of Sample Preparation Methods for the Analysis of Papaya Leaf Proteins Through Two-Dimensional Gel Electrophoresis. Phytochem Analysis 2009, 20, 456-464.
[56]Molloy M P, Two-dimensional electrophoresis of membrane proteins using immobilized pH gradients. Anal Biochem 2000, 280, 1-10.
[57]Des Francs C C, Thiellement H, de Vienne D, Analysis of Leaf Proteins by Two-Dimensional Gel Electrophoresis: Protease Action as Exemplified by Ribulose Bisphosphate Carboxylase/ Oxygenase Degradation and Procedure to Avoid Proteolysis During Extraction. Plant Physiol 1985, 78, 178-182.
[58]Van Etten J L, Freer S N, McCune B K, Presence of a Major (Storage ) Protein in Dormant Spores of the Fungus Botryodiplodia theobromaet. J Bacteriol 1979, 138, 650-652.
[59]Schuster A M, Davies E, Ribonucleic Acid and Protein Metabolism in Pea Epicotyls : II. Response to Wounding in Aged Tissue. Plant Physiol, 1983, 73: 817-821.
[60]Chen H, Zhao H, Yang T, Ruan S, Wang H, Xiang N, Zhou H, Li Q, Diao X, Comparative evaluation of five protocols for protein extraction from stony corals (Scleractinia) for proteomics. Electrophoresis 2018, 0, 1-9.