Cell culture
BM-MSCs were established from whole bone marrow adherent cell culture, cryopreserved in liquid nitrogen in our laboratory, and used as subjective cells for reprogramming. The characteristics of BM-MSCs were determined as previously described [16]. BM-MSCs were grown at a density of 105 cells per 10 cm2 in Dulbecco's Modified Eagle Medium (DMEM; Invitrogen) supplemented with 10% fetal bovine serum (FBS), 100 U/ml of penicillin and 100 μg/ml of streptomycin. Cells were cultured at 37°C in a humidified atmosphere of 5% CO2, and the medium was changed every two days. BM-MSCs were split with 0.25% trypsin/ethylene diaminetetracetic acid (trypsin-EDTA)(Haotian, Hangzhou, China) when they reached 90% confluence.
Establishment of OCT4 overexpression BM-MSCs and generation of putative iPS cells
The recombinant plasmid pcDNA3.1-OCT4 was prepared as previously described [16] and transfected into 2×105 BM-MSCs using liposome transfection (Lipofectamine™ 2000, Invitrogen, USA), according to the manufacturer’s instructions. Consecutive transfections were performed to improve the transfection efficiency. Cultures were maintained at 37°C, and 5% of CO2 with daily medium changes. Stable OCT4 expression was selected with continuous geneticin (500 ng/ml) (G418 Sulfate, Sangon, Shanghai) resistance screening and consecutive single-cell subcloning. Individual cells were isolated from G418-resistant colonies. The expression of OCT4 in G418-resistant stable clones was verified using flow cytometry (FCM), cellular immunofluorescence assay (CIFA), and RT-PCR.
Selected colonies were then cultured with ES medium 2 (additives and their final concentrations of the medium are shown in Table 1) for one week. This was followed by further culture in ES medium 1 (detailed additives and their final concentrations of the medium are shown in Table 1) in 0.1% gelatin-coated 6-well culture plates until putative iPS colonies formed. During the reprogramming process, colonies were observed daily with a inverted microscope (Olympus) and selected for further expansion culture based on cell morphology. The medium was replaced every alternate day. Colonies expanded for up to six passages were used for characterizing iPSC features. Pluripotency marker analysis was carried out as previously described [2, 7, 9]. Differentiation potential in vitro and in vivo analyses were performed as described in literature [2, 7, 9].
CIFA
For CIFA, cells were fixed with 4% paraformaldehyde at 26°C for 10 minutes. When nuclear proteins were detected, cells were permeabilized with 0.1% Triton X-100 (Sigma) for 8 min and then blocked with 4% normal goat serum (Boshide, Wuhan, China) for 30 min. Cells grown in 12-well plates were incubated with primary (rat) antibodies against human OCT4 (1:100 dilution, R&D), SSEA-4 (1:100, Millipore), TRA-1-60 (1:100, Millipore), and TRA-1-81 (1:100, Millipore) for 30 min. After washing with PBST (0.1% Tween-20 in PBS) thrice, cells were incubated with the secondary antibodies (FITC-conjugated goat anti-rat IgG and FITC-conjugated goat anti-rat IgM [KPL, 1:200 dilution])at 26 °C for 2 h. Nuclear counterstaining was then performed with 4’, 6’-Diamidino-2-phenyl indole (DAPI, Kaiji, China), and fluorescence signals were observed and imaged using a fluorescence microscope (Olympus) equipped with a camera.
RT-PCR analysis
Primer Premier 5 software was used to design the primer sets for reverse transcription PCR analysis of endogenous pluripotent genes and the three germ layer (endoderm, ectoderm, and mesoderm), as shown in Table 2. Total RNA was prepared using TRIzol® Plus RNA Purification Kit (Invitrogen) according to the manufacturer’s protocol and used for cDNA synthesis. The cDNA was synthesized with M-MLV reverse transcriptase (Invitrogen). GAPDH was used as an internal control. Amplification was performed in a final volume of 50 μL, and the PCR reaction conditions were set as shown in Table 2. All reactions were repeated twice in triplicate using independently prepared cDNAs.
FCM analysis
Single cell suspensions were prepared for subsequent experiments. For detecting the expression of ESC surface markers, including stage-specific embryonic antigen 4 (SSEA-4), tumor-related antigen (TRA-1-60), and TRA-1-81 expression (all the above antibodies were purchased from Millipore), cells were stained at 4°C for 30 minutes with the above primary antibodies and then washed and stained with FITC-conjugated goat-anti-mouse IgG and IgM (GAM-FITC, Becton Dickinson). For nuclear protein detecting of OCT4, SOX2 and NANOG, intracellular staining was carried out, cells were fixed with 4% paraformaldehyde and then permeabilized with 0.1% Triton X-100 at 4°C for 30 minutes. After washing, cells were incubated with rat anti-human OCT3/4 (R&D Systems) primary antibody, SOX2-PE (Becton-Dickinson), and NANOG-PE (R&D Systems). Then, cells with OCT3/4 primary antibody staining were washed and incubated with FITC-conjugated goat anti-rat IgG (KPL, USA) at 4°C for 30 minutes under light protection. Hematopoietic surface markers were detected using the following antibodies: CD19PE, CD33-APC, CD41a-PE, CD61-PerCP, CD42a-FITC, CD10-FITC, CD14-FITC, HLA-DR, CD56-PE, CD34-PerCP, and CD45-FITC as detecting reagents, and mouse IgG1-PE, mouse IgG1-APC, IgG1-PerCP, and IgG1-FITC (all purchased from Becton Dickinson, San Jose, CA, USA) served as isotype controls to determine the autofluorescence background. Cells were analyzed using a FACSCalibur flow cytometer (Becton Dickinson, San Jose, CA, USA). The Cell Quest software (Becton Dickinson, USA) was used for data acquisition and analysis. Independent FCM experiments were performed at least twice.
EB formation by putative BM-MSCs derived iPSCs
For EB formation, BMSCs-iPSCs were dissociated into single-cell suspensions using AccutaseTM (Millipore), and then maintained in low-cluster 12-well plate (Nest) in the presence of EB formation medium (detailed components and additives are shown in Table 2) for at least one week in floating culture. The medium was changed every alternate day. The in vitro spontaneous differentiation of BMSC-iPSCs was performed based on EB formation according to the protocol reported by Yamanaka S et al. with some modifications in culture medium [2]. The cells were then harvested and analyzed for the expression levels of the three germ layer marker genes using RT-PCR..
Differentiation into CD34+ progenitor cells following growth factor treatment
The hematopoietic differentiation potential of putative iPSCs was evaluated under feeder-free condition, as previously described [7, 17]. To differentiate into CD34+ progenitor cells, the single-cell suspensions were transferred to a 12-well low-cluster plate and cultured in BM-MSCs medium with 20% FBS for seven days. The cells were divided into two groups to induce CD34+ progenitor cell formation. In the first group, cells were cultured in the hematopoietic differentiation medium 1 supplemented with six growth factors for 2-3 weeks. In the second group, cells were cultured in differentiation medium containing SCF (50 ng/ml) and Flt-3 ligand (50 ng/ml) for 7-10 days, then transferred to the hematopoietic differentiation medium 2 with the second set of seven growth factors for additional 2-3 weeks. The cells were then prepared for further characterization for CD34 and CD45 expression using FCM.
Alkaline phosphatase (ALP) staining and telomerase activity detection
ALP staining was performed using an Alkaline Phosphatase Kit (Millipore, USA) according to the manufacture’s instructions. Telomerase activity was verified with a TRAPeze-RT Telomerase Detection Kit (Millipore, USA) according to the manufacturer’s instructions. Each sample of the latter was separated using TBE-based 10% polyacrylamide gel electrophoresis and the gel was stained with ethidium bromide.
Teratoma formation assay
One million putative iPSCs were harvested after Collagenase (AccutaseTM) digestion, washed with PBS, and resuspended in 200 μl ES medium. Then these cells were injected subcutaneously in nude mice. The presumed teratomas were excised 6-8 weeks after injection and histologiclly treated as previously described [7, 11]. These experiments were approved by the Institutional Animal Conservation and Utilization Committee (IACUC) of Zhejiang University. Putative teratomas were collected and fixed with 4% paraformaldehyde/PBS. Paraffin-embedded teratomas were stained with hematoxylin and eosin.
Data analysis
The data were analyzed using SAS 9.2 (SAS Institute Inc., Raleigh, NC, USA), and processed using Microsoft Excel. The expression levels of surface markers (CD19-PE, CD33-APC, CD41a-PE, CD61-PerCP, CD42a-FITC, CD10-FITC, CD14-FITC, HLA-DR, CD56, CD34, and CD45) and pluripotent transcript factors (TRA-1-60, OCT4, SOX2 and NANOG) were expressed as the mean ± standard deviation (SD). Analysis of variance was performed to compared the parameters and a P value < 0.05 was regarded statistically significant.