General procedure for the synthesis of compounds 7a-e and 11a-e
The synthetic route of compounds is displayed in Scheme 1. The condensation of 2-aminopyridine 1 with appropriate ethyl 3-bromo-2-oxo propanoate 2 resulted in the formation of ethyl imidazo[1,2-a]pyridine-2-carboxylate 3. The carbohydrazide derivative 5 was produced in the presence of excess amount of hydrazine hydrate. Compound 7a-e was prepared via the reaction of different aldehydes 6a-e and 5. Moreover, compound 5 was treated with propargyl bromide to provide prop-2-yn1yl imidazo[1,2-a]pyridine-2-carbohydrazide 9 which was further coupled with various benzyl azide intermediates 10a-e through click reactions to generate 11a‑e derivatives.
Synthesis of ethyl imidazo[1,2-a]pyridine-2-carboxylate (3)
2-Aminopyridine (1, 5 mmol) was first dissolved in ethanol (10 mL) and ethyl 3-bromo-2-oxo propanoate (2, 7.5 mmol,) was added gently to the mixture. The reaction mixture was stirred at 0°C for 1 hour. The reaction was completed after 24 hours; the progression of the reaction was regularly monitored by thin layer chromatography (TLC). After completion, the solvent was evaporated. The precipitate was filtered off and washed with diethylether, dried and recrystallized from ethanol to afford creamy white solid.
Yield: 90%, Rf = 0.70 (CHCl3:MeOH 90:10); mp: 135-137 ◦C, IR (KBr, cm-1 ) υ max: 3086 (O-H), 1729 (Ester C=O) ; 1HNMR (300MHz, Acetone-d6): δ (ppm) 8.42-8.40 (d, J=6.0 Hz, 1H, imidazopyridine-H5), 8.30 (s, 1H, imidazopyridine-H), 7.45-7.42 (d, J=9.0 Hz, 1H, imidazopyridine-H), 7.22-7.17 (t, J=6.0 Hz, 1H, imidazopyridine-H), 6.86-6.82 (t, J=6.0 Hz, 1H, imidazopyridine-H), 4.25-4.18 (q, 2H, COOCH2CH3), 1.25-1.20 (t, J=9.0, 3H, COOCH2CH3), MS (EI) m/z (%): 190 (M+, 28), 145 (34), 118 (100), 91 (19), 78 (40).
Synthesis of imidazo[1,2-a]pyridine-2-carbohydrazide (5)
Ethylimidazo[1,2-a]pyridine-2-carboxylate (3, 5 mmol) was reacted with excess amounts (3-4 mL) of hydrazine hydrate 4 for 3 hours under the reflux condition. After completion, the mixture was poured into ice water (50 mL), filtered and washed with cold water.
light creamy solid, Yield: 25%, Rf = 0.36 (CHCl3:MeOH; 90:10), mp: 192-194 ◦C. IR (KBr, cm -1) υ max : 3353 and 3187 (NH2), 1660 (Amide C=O), 1HNMR (300MHz, CDCl3): δH (ppm) 9.53 (s, 1H, CONH), 8.59-8.57 (d , J = 6.0 Hz, 1H, imidazopyridine-H), 8.36 (s, 1H, imidazopyridine-H), 7.60-7.57 (d, J = 9.0 Hz, 1H, imidazopyridine-H), 7.36-7.30 (t, J = 9.0 Hz, 1H, imidazopyridine-H), 6.99-6.95 (t, J = 6.0 Hz, 1H, imidazopyridine-H-6), 4.48 (s, 2H, CONHNH2), MS (EI) m/z (%): 176 (M+, 100), 145 (100), 117 (45), 97 (34), 78 (39).
General procedure for synthesis of N´-benzylidene imidazo[1,2-a]pyridine-2-carbohydrazide derivatives (7a-e)
Title compounds 7a-e were synthesized by adding appropriate aromatic aldehydes (1 mmol) into the solution of imidazo[1,2-a]pyridine-2-carbohydrazide ( 5, 1 mmol) in ethanol and refluxed for 24 h. After completion of the reaction as indicated by TLC (chloroform methanol 95:5), the reaction mixture was allowed to cool in room temperature. The precipitated product was filtered and re-crystallized from methanol.
Synthesis of N´-benzylidene imidazo[1,2-a]pyridine-2-carbohydrazide (7a)
Yield: 53%, Rf = 0.40 (CHCl3:MeOH 95:5), mp: 257-259◦C, IR (KBr, cm -1) υ max: 3244 (Amide N-H), 1666 (Amide C=O). 1HNMR (300MHz, DMSO-d6): δH (ppm) 11.95 (s, 1H, CONH), 8.62 (m, 2H, N=CH and imidazopyridine-H), 8.55 (s, 1H, imidazopyridine-H), 7.72- 7.70 (m, 2H, Ar-H), 7.66-7.63 (d, J = 9.0 Hz, 1H, imidazopyridine-H), 7.47-7.36 (m, 4H, imidazopyridine-H and Ar-H), 7.05-7.00 (t, J = 6.0 Hz, 1H, imidazopyridine-H); 13CNMR (70 MHz, DMSO): dC (ppm) 158.97, 148.49, 144.34, 138.74, 134.92, 130.49, 129.32 (2C), 128.24, 127.54 (2C), 127.34, 117.64, 116.37, 113.97.MS (EI) m/z (%): 263 (M+, 30), 161 (91), 143 (77), 118 (100), 97 (25), 78 (38).
Synthesis of N´-(4-fluorobenzylidene)imidazo[1,2-a]pyridine-2-carbohydrazide (7b)
Yield: 39%, Rf = 0.43 (CHCl3:MeOH 95:5), mp: 234-236◦C, IR (KBr, cm -1 ) υ max: 3302 (Amide N-H), 1669 (Amide C=O), 1HNMR (300MHz, DMSO-d6): δH (ppm) 11.95 (s, 1H, CONH), 8.63-8.61 (m, 2H, N=CH and imidazopyridine-H), 8.55 (s, 1H, imidazopyridine-H), 7.78- 7.74 (m, 2H, Ar-H), 7.66-7.63 (d, J = 9.0 Hz, 1H, imidazopyridine-H), 7.42-7.36 (t, J = 9.0 Hz, 1H, imidazopyridine-H), 7.33-7.27 (m, 2H, Ar-H), 7.05-7.00 (t, J = 6.0 Hz, 1H, imidazopyridine-H); 13CNMR (70 MHz, DMSO): dC (ppm) 161.86, 159.04, 147.26, 144.41, 138.95, 131.57, 129.71, 129.60, 128.20, 127.14, 117.73 116.53, 116.38, 116.24, 113.86.MS (EI) m/z (%): 282 (M+, 28), 161 (100), 144 (100), 118 (100), 91 (28), 78 (50).
Synthesis of N´-(4-chlorobenzylidene)imidazo[1,2-a]pyridine-2-carbohydrazide (7c)
Yield: 44%, Rf = 0.44 (CHCl3:MeOH 95:5), mp: 226-228◦C, IR (KBr, cm -1 ) υ max: 3441 (Amide N-H), 1656 (Amide C=O), 1HNMR (300MHz, DMSO-d6): δH (ppm) 12.02 (s, 1H, CONH), 8.63-8.61 (m, 2H, N=CH, imidazopyridine-H-5), 8.55 (s, 1H, imidazopyridine-H-3), 7.74-7.71 (d, J = 9.0 Hz, 2H, Ar-H), 7.66-7.63 (d, J = 9.0 Hz, 1H, imidazopyridine-H), 7.54-7.51 (d, J = 9.0 Hz, 2H, Ar-H), 7.42- 7.36 (t, J = 9.0 Hz, 1H, imidazopyridine-H), 7.05-7.00 (t, J = 6 Hz, 1H, imidazopyridine-H), 13CNMR (70 MHz, CDCl3): dC (ppm) 157.30, 145.69, 143.29, 135.34, 131.16, 127.94 (3C), 125.85, 125.59, 116.94, 114.48, 112.95. MS (EI) m/z (%): 298 (M+, 27), 161 (100), 144 (100), 118 (100), 91 (30), 78 (50).
Synthesis of N´-(4-bromobenzylidene)imidazo[1,2-a]pyridine-2-carbohydrazide (7d)
Yield: 48%, Rf = 0.59 (CHCl3:MeOH 95:5), mp: 230-232◦C, IR (KBr, cm -1 ) υ max: 3441 (Amide N-H), 1654 (Amide C=O),1HNMR (300MHz, DMSO-d6): δH (ppm) 12.03 (s, 1H, CONH), 8.63-8.61 (d, J = 6.0 Hz, 1H, imidazopyridine-H), 8.59 (s, 1H, N=CH) 8.56 (s, 1H, imidazopyridine-H), 7.66-7.63 (m, 5H, imidazopyridine-H and Ar-H), 7.42-7.37 (m, 1H, imidazopyridine-H-7), 7.05-7.00 (t, J = 6.0 Hz, 1H, imidazopyridine-H); 13CNMR (70 MHz, DMSO): dC (ppm) 159.11 (CONH), 147.18, 144.42, 138.80, 134.24, 132.47, 132.31, 130.67, 129.37, 128.22, 127.21, 123.64, 117.73, 116.46, 113.90. MS (EI) m/z (%): 342 (M+, 14), 161 (100), 144 (77), 118 (99), 91 (33), 78 (34).
Synthesis of N´-(4-methylbenzylidene)imidazo[1,2-a]pyridine-2-carbohydrazide (7e)
Yield: 38%, Rf = 0.48 (CHCl3:MeOH 95:5), mp: 180-182◦C, IR (KBr, cm -1 ) υ max: 3432 (Amide N-H), 1653 (Amide C=O), 1HNMR (300MHz, CDCl3): δH (ppm) 10.37 (s, 1H, CONH), 8.23 (s, 1H, imidazopyridine-H), 8.15 (s, 1H, N=CH), 8.12-8.09 (d, J = 9.0, 1H, imidazopyridine-H), 7.65-7.62 (d, J = 9.0 Hz, 2H, Ar-H), 7.53- 7.50 (d, J = 9.0 Hz, 1H, imidazopyridine-H), 7.24-7.21 (t, overlap with CDCl3, 1H, imidazopyridine-H), 7.16-7.13 (d, J = 9.0 Hz, 2H, Ar-H), 6.84-6.80 (t, J = 6.0 Hz, 1H, imidazopyridine-H), 2.31 (s, 3H, CH3); 13CNMR (70 MHz, CDCl3): dC (ppm) 158.11, 148.45, 144.15, 140.93, 138.06, 130.86, 129.41(2C), 127.86 (2C), 127.04, 126.72, 117.78, 115.55, 114.02, 21.58. MS (EI) m/z (%): 278 (M+, 25), 161 (84), 144 (71), 118 (100), 91 (21), 78 (43).
Synthesis of N´-(Prop-2-yn-1-yl) imidazo[1,2-a]pyridine-2-carbohydrazide (9)
A mixture of imidazo[1,2-a]pyridine-2-carbohydrazide (5 ,2 mmol), propargyl bromide (8, 2 mmol) and K2CO3 (2 mmol) in DMF was stirred at room temperature for 72 hours. The mixture was concentrated and extraction was performed three times with chloroform: water. The chloroform layer was separated, washed with saturated NaCl solution and dried over anhydrous Na2SO4 and filtered then the solvent was removed under reduced pressure. The product was purified by column chromatography (ethylacetate: methanol 90:10). Yield: 22%, Rf = 0.85 (CHCl3:MeOH 90:10), mp: 142-144 ◦C. IR (KBr, cm -1 ) υ max = 3583 (NH), 3307 (amide N-H), 1711 (Amide C=O); 1HNMR (300MHz, CDCl3): δH (ppm) 8.77 (s, 1H, CONH), 8.10-8.08 (m, 2H, imidazopyridine-H), 7.53-7.50 (d, J = 9.0 Hz, 1H, imidazopyridine-H), 7.23 (t, overlap with CDCl3, 1H, imidazopyridine-H), 6.83-6.78 (t, J = 9.0 Hz, 1H, imidazopyridine-H), 4.88 (s, 1H, CONHNH), 3.70 (s, 2H, CH2), 2.23 (s, 1H, C CH ); MS (EI) m/z (%): 214 (M+, 14), 161 (100), 144 (99), 118 (80), 78 (79), 39 (27)[13, 14].
General procedure for synthesis of N´-((1-benzyl-1H-1,2,3-triazol-4-yl)methyl)imidazo [1,2a] pyridine-carbohydrazide derivatives (11a-e)
The mixture of benzyl bromide/ chloride reagent, NaN3, triethylamine (2 drops), water (2 mL) and tertiary butanol (2 mL) was stirred and heated at 70 ºC for 1 hour. After completion, the formation of benzyl azide intermediate was confirmed by TLC (petroleum ether 100%), Then the relevant benzyl azide solution was added to a solution of N´-(Prop-2-yn-1-yl)imidazo[1,2-a]pyridine-2-carbohydrazide (9) in water (2 mL) and tertiary butanol (2 mL). The reaction mixture was stirred in the presence of catalytic amount of sodium ascorbate and CuSO4.5H2O (0.05 mmol) for a period of 4 to 7 days. After completion of the reaction, the mixture was extracted using water and chloroform mixture for three times. The combined organic layers were dried over saturated NaCl solution and Na2SO4. The product was purified by plate chromatography (ethylacetate: methanol, 90:10). At last the products were recrystallized using ethanol to get a pure compound [22].
Synthesis of N´-((1-benzyl-1H-1,2,3-triazol-4-yl)methyl)imidazo[1,2-a]pyridine-2-carbohydrazide (11a)
For this reaction, benzyl bromide (10a, 1.1 mmol) , NaN3 (1 mmol) and compound 9 (0.8 mmol) were employed as starting materials. Yield: 21%, Rf = 0.24 (EtOAc:EtOH 90:10), mp: 150-152 ◦C, IR (KBr, cm -1) υ max: 3584 (amine N-H), 3405 (amide N-H), 1711 (amide C=O). 1HNMR (300MHz, CDCl3): δH (ppm) 8.31(s, 1H, CONH), 8.20 (s, 1H, imidazopyridine-H), 8.11 -8.08 (d, J = 9.0 Hz, 1H, imidazopyridine-H), 8.03 (s, 1H, triazole-H), 7.67-7.60 (m, 1H, imidazopyridine-H), 7.54-7.51` (d, J = 9.0 Hz, 1H, imidazopyridine-H), 7.34-7.32 (m, 3H, Ar-H), 7.25-7.23 (m, 2H, Ar-H), 6.85-6.80 (t, J = 9.0 Hz, 2H, imidazopyridine-H), 5.49 (s, 2H, CH2), 4.14 (s, 2H, CH2), 13CNMR (70 MHz, CDCl3): dC (ppm) 161.06 , 144.48, 143.26 , 138.76,134.62, 129.00 (2C), 128.58, 128.01(2C),126.27, 125.93,123.63, 118.43, 114.51, 113.43, 54.12 , 51.39. MS (EI) m/z (%): 345 (M+, 24), 162 (57), 145 (86), 118 (100), 91 (57).
Synthesis of N´-((1-(4-fluorobenzyl)-1H-1,2,3-triazol-4-yl)methyl)imidazo[1,2-a]pyridine-carbohydrazide (11b)
For this reaction , 4-fluorobenzyl chloride (10b,1.65 mmol), NaN3 (1.5 mmol) and compound 9 (1.2 mmol) were employed .Yield: 17%, Rf = 0.20 (EtOAc:EtOH 90:10), mp: 205-207 ◦C, IR (KBr, cm -1) υ max: 3584 (amine N-H), 3306 (amide N-H), 1710 (amide C=O), 1HNMR (300MHz, CDCl3): δH (ppm) 8.47(s, 1H, CONH), 8.06-8.04 (d, J = 6.0 Hz, 1H, imidazopyridine-H-5), 8.00 (s, 1H, imidazopyridine-H), 7.62 (s, 1H, triazole-H), 7.50-7.47 (d, J = 9.0 Hz, 1H, imidazopyridine-H), 7.20-7.15 (t, overlap with CDCl3, 1H, imidazopyridine-H), 7.13-7.08 (m, 2H, Ar-H), 6.90-6.84 (t, J = 9.0 Hz, 2H, Ar-H), 6.81-6.76 (t, J = 9.0 Hz, 1H, imidazopyridine-H) 5.37 (s, 2H, CH2), 4.21 (s, 2H, CH2); 13CNMR (70 MHz, CDCl3): dC (ppm) 160.85, 144.50, 144.13, 138.57, 130.61, 130.57, 129.88, 129.77,126.34, 126.12,123.02, 118.35, 116.04, 115.75, 114.69, 113.55, 53.33, 51.89. MS (EI) m/z (%): 365 (M+, 2), 258 (60), 213 (34), 191 (9), 162 (23), 145 (86), 118 (43). 109 (100), 90 (16).
Synthesis of N´-((1-(4-chlorobenzyl)-1H-1,2,3-triazol-4-yl)methyl)imidazo[1,2-a]pyridine-carbohydrazide (11c)
For this reaction, 4-chlorobenzyl chloride (10c, 1.1 mmol) NaN3 (1 mmol), and compound 9 (0.8 mmol) were used. Yield: 23%, Rf = 0.22 (EtOAc:EtOH 90:10), mp: 193-195 ◦C. 1HNMR (300MHz, CDCl3): δH (ppm) 8.44 (s, 1H, CONH), 8.06-8.04 (m, 2H, imidazopyridine-H), 7.97 (s, 1H, imidazopyridine-H), 7.63 (s, 1H, triazole-H), 7.50-7.47 (d, J = 9.0 Hz, 2H, Ar-H), 7.19-7.13 (t, overlap with CDCl3, 1H, imidazopyridine-H), 7.05-7.02 (d, J = 9.0 Hz, 2H, Ar-H), 6.80-6.75 (t, J = 9.0 Hz, 1H, imidazopyridine-H), 5.36 (s, 2H, CH2), 4.21 (s, 2H, CH2), 13CNMR (70 MHz, CDCl3): dC (ppm) 160.57, 144.05, 143.56, 134.54, 133.21 (2C), 129.33 (2C), 129.17 (2C), 126.56, 123.55(2C), 117.98, 114.63, 113.84, 53.35, 51.78. MS (EI) m/z (%): 379 (M+, 21), 161 (42), 145 (71), 125 (46), 91 (21), 78 (36).
Synthesis of N´-((1-(4-bromobenzyl)-1H-1,2,3-triazol-4-yl)methyl)imidazo[1,2-a]pyridine-carbohydrazide (11d)
For this reaction, 4-bromobenzyl bromide (10d ,1.65 mmol), NaN3 (1.5 mmol), and compound 9 (1.2 mmol) were used.Yield: 17%, Rf = 0.32 (EtOAc:EtOH 90:10), mp: 186-188 ◦C, 1HNMR (300MHz, CDCl3): δH (ppm) 8.45 (s, 1H, CONH), 8.07-8.05 (d, J = 6.0 Hz, 1H, imidazopyridine-H), 7.99 (s, 1H, imidazopyridine-H), 7.63 (s, 1H, triazole-H), 7.50-7.47 (d, J = 9.0 Hz, 2H, imidazopyridine-H), 7.31-7.28 (d, J = 9.0 Hz, 2H, Ar-H), 6.98-6.95 (d, J = 9.0 Hz, 2H, Ar-H), 6.81 -6.76 (t, J = 9.0 Hz, 1H, imidazopyridine-H), 5.35 (s, 2H, CH2), 4.21 (s, 2H, CH2); 13CNMR (70 MHz, CDCl3): dC (ppm) 160.71 (CONH), 144.03, 143.56, 137.78, 133.83, 133.77, 132.15, 132.08, 129.68, 129.62, 126.76, 123.76, 122.71, 117.86, 114.88, 113.91, 53.41, 51.86. MS (EI) m/z (%): 425 (M+, 3), 320 (35), 251 (10), 213 (45), 169 (61), 145 (100), 118 (52), 90 (37).
Synthesis of N´-((1-(4-methylbenzyl)-1H-1,2,3-triazol-4-yl)methyl)imidazo[1,2-a]pyridine-carbohydrazide (11e)
For this reaction, 4-methylbenzyl chloride 10e (4.125 mmol, MW: 140.6 g/mol) was added to NaN3 (3.75 mmol), and in the second part, the amount of compound 9 used was 3 mmol.Yield: 24%, Rf = 0.28 (EtOAc:EtOH 90:10), mp: 140-142 ◦C, IR (KBr, cm -1 ) υ max: 3682 (Amine N-H), 3306 (Amide N-H), 3018 (Ar C-H), 1710 (Amide C=O), 1HNMR (300MHz, CDCl3): δH (ppm) 8.51(s, 1H, CONH), 8.04 (s, 3H, Ar-H), 7.59-7.48 (brm, 2H, Ar-H), 7.13-7.02 (brm, overlap with CDCl3, 2H, Ar-H), 6.78 (s, 2H, Ar-H), 5.64 (m, 1H, Ar-H), 5.39-5.35 (brd, 2H, CH2), 4.20 (s, 2H, CH2), 2.23 (s, 3H, CH3); 13CNMR (70 MHz, CDCl3): dC (ppm) 160.84, 144.50, 143.84, 138.59, 134.72, 131.61, 129.62, 128.95, 128.57, 128.03, 126.38, 126.09, 123.19, 118.36, 114.77, 113.54, 53.94, 51.78, 46.61. MS (EI) m/z (%): 361 (M+, 6), 347 (9), 213 (27), 162 (89), 145 (100), 1 18 (64), 105 (45), 91 (60).
Biological activity
Cytotoxicity assay
Assessment of cell viability after exposure of cancer cells to synthetic compounds was performed using MTT reduction assay. Cells were plated in 96-well microplates at densities of 30,000 cells/mL (100 μL in each well). The plates were incubated overnight at 37 °C and then 50 μL of the growth medium was replaced with the same amount of fresh growth medium containing 3-4 different concentrations of synthesized analogues at the final concentrations of 10-100 µM. Test compounds were initially dissolved in DMSO and then diluted in growth medium. The upper limit of DMSO concentration in each well was 0.5%. Fresh culture medium was added to the wells, followed by incubation for 72 hours. Afterwards, 80 μL of the solution in each well was substituted with the identical quantity of growth the medium comprising 0.5 mg/mL of MTT. Cells were subsequently incubated at 37°C for 4 hours and then 80 μL of the solution in each well was deleted. Introduction of DMSO (200 μL) to each well caused the formazan crystals formed inside the viable cells to dissolve. The process lasted 1.5 hours (1 hour incubation and 30 minute shaking). The optical absorbance of the final solution was quantified at the wavelength of 570 nm using a microplate reader. IC50 values for all derivatives were calculated by the means of CurveExpert 1.34 software. (35) To prove the reliability of the results, we repeated each experiment 3 to 5 times [22, 23].
Cell Cycle Analysis:
The analysis of cells in different phases of the cell cycle and the sub-G1 phase were monitored using propidium iodide (PI)-based assessment of cell cycle by flow cytometry. MCF-7 cells were seeded in 12-well plates (1 × 105 cells/well) and after being incubated overnight to allow cell attachment, were treated with different concentrations of 7d (20, 50, and 100 nM) for 48 h. At the end of the incubation, the cells in each well were collected and washed with PBS. Then, they were fixed with 70% ethanol overnight at -20 °C. After 24 h, the fixed cells were washed with PBS and subsequently stained with DNA staining solution (PI 20 μg/mL and RNase 200 μg/mL) at room temperature for 30 min in the dark. Ten thousand cells of each sample were analyzed using a FACS Calibur flow cytometer (BD Biosciences) and the percentage of the cells in sub-G1, G0/G1, S, and G2/M phases were calculated using CellQuest (BD, USA) software [24].