Bacterial strains and growth conditions
The strains used in this study are listed in Table 1. Lactococcal strains were grown on M17 medium (BK012HA, Biokar Diagnostics) supplemented either with 0.5% glucose (M17G medium) at 30°C without shaking for DNA isolation or with 1% glucose (M17G1) at 30°C with gentle shaking (90 rpm) for induction of expression. E. coli strains were grown in Luria-Bertani (LB) medium (L3522, Merck) at 37°C with shaking (180 rpm). Antibiotics were used for plasmid maintenance at the following final concentrations: chloramphenicol (10 µg/mL) for L. lactis and kanamycine (100 µg/mL) for E. coli.
Table 1: Bacterial strains and plasmids used in this study
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Relevant genotype or phenotype
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References or sources
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Strains
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E. coli
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DH5α
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F- φ80lacZΔM15 Δ(lacZYA-argF)U169 recA1 endA1 hsdR17(rk-, mk+)
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Invitrogen
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phoA supE44 thi-1 gyrA96 relA1 λ-
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L. lactis
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NZ9000
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MG1363 pepN::nisRK
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Ozyme
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NZ9700
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Progeny of the conjugation between nisin producer strain NIZO
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NIZO
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B8 with MG1614 (RifR StrpR derivative of MG1363). Nisin producer
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strain for induction experiments
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Plasmids
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pKL-HTC
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plasmid containing the caveolin gene
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Kanr
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collaborators
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pNZ8148
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Cmr
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Ozyme
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Kanr and Cmr: resistance to kanamycine and chloramphenicol, respectively
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Cloning for caveolin-1β expression in pNZ8148
The gene of canine caveolin-1β (Cav1β, Uniprot P33724.2, 32-178) cloned into the pKL vector [20] with a 10-His affinity tag and TEV protease site at the N-terminus of the gene (HTC for His-tag-TEV-caveolin) was used for subcloning into pNZ8148. First, a mutation was performed to insert the restriction site NcoI at the start codon using the QuickChange Lightning Site-Directed Mutagenesis kit (Agilent) following the manufacturer’s instructions with the primer pKL-NcoIm fwd and rev (Table 2). The kanamycin-resistant clones obtained were tested by digestion with NcoI and NdeI (NEB, Ipswich, USA) after extraction using the Nucleospin Plasmid kit (Macherey-Nagel) and following the manufacturer’s instructions. The corresponding cDNA was excised from mutated pKL/HTC by digestion with NcoI and SacI (NEB, Ipswich, USA) following the manufacturer’s instructions and ligated into pNZ8148NS previously digested with the same endonucleases. The two ligation reactions were purified, eluted, and then used to transform NZ9000 strain by electroporation. Chloramphenicol-resistant clones were selected on M17GChl Agar Petri dishes after 1–2 days at 30°C. Presence of the cDNA and correct sequence of the clones were confirmed by both endonuclease digestion and sequencing analysis with pNZ8148 fwd and rev primers (Table 2). The recombinant vector was termed pNZ-HTC.
Table 2: Oligonucleotides primers used for cloning and sequencing
Oligonucleotides
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Sequence 5'-3'
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pKL-NcoIm fwd
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GGGCGCGGATCCATGGGACATCATCATCATCATC
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pKL-NcoIm rev
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GATGATGATGATGATGTCCCATGGATCCGCGCCC
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pNZ8148 fwd
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CGCGAGCATAATAAACGGCTCTG
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pNZ8148 rev
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GTGTTGCTTTGATTGATAGCCAAAAAGC
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Induction of membrane protein expression
Precultures in M17G1Chl inoculated with frozen stock from both C- (negative control corresponding to bacteria transformed with the empty vector) and HTC recombinant bacteria have been incubated overnight at 30°C with gentle shaking (90 rpm). They have been added at 1/40e (v:v) to 250mL M17G1Chl in Schott bottles and incubated at 30°C with gentle shaking (90 rpm) until the OD reached 0.75-0.80 (for details, see [31] At this time, induction was performed by addition of nisin obtained from supernatant of culture of NZ9700 strains [32]. Incubation has been pursued for 4 additional hours, optimal duration of induction suitable for higher level of MP expression in L. lactis [27-33]. Bacteria have been harvested by centrifugation at 5000 g for 15 min at 4°C. The pellets have been resuspended, washed in buffer TN (50 mM Tris-HCl, 150 mM NaCl, pH 7.5) and centrifuged at 5000 g for 15 min, at 4°C one more time. The bacterial pellets were kept at −80°C after resuspension in TN until isolation.
Isolation of crude bacterial membrane proteins
The bacteria were disrupted by 2-fold passages through a One Shot (Constant Cell Disruption Systems, Northants, UK) at 35,000 p.s.i. (2.3 kbars) and kept on ice until centrifugation. After cell breakage, the lysates were centrifuged at 10,000 g for 10 min, at 4°C, and the supernatant containing proteins was transferred into centrifuge tubes for further ultracentrifugation at 150,000 g for 1 h, at 4°C. MPs present in pellets were resuspended in TN/1% glycerol and kept at −80°C.
SDS-Polyacrylamide Gel Electrophoresis and Western blotting
Protein content of membrane fractions were estimated using the Bio-Rad protein assay reagent (Bio-Rad, Hercules, CA). Equal quantity of protein of each sample was mixed with 4x sample buffer and heated at 95 °C for 10 min before separation by SDS polyacrylamide gel electrophoresis using a 4-12% gradient gel at the same time as a positive control corresponding to total MPs isolated from insect cells transformed with the pKL/HTC plasmid. For Western blotting, proteins were transferred to nitrocellulose membranes (10600019, Amersham), and blocked using 5% skim milk. Membranes were incubated either with antibody against caveolin (610407, BD Science, USA) and then with secondary anti-mouse HRP-conjugated antibodies (170-6516, Biorad, USA) or with His-HRP conjugate (15165, Fisher). Detection was then performed through enhanced chemiluminescence (ECL) with a ChemiDoc system (Biorad, USA). Bands corresponding to the proteins were analyzed and quantified through ImageLab software.
Density gradient ultracentrifugation
First, 1.25 mg of total membrane proteins isolated from both EV and HTC recombinant bacteria cultured and isolated at the same time were loaded on a discontinuous sucrose gradient from 20 to 44%. After ultracentrifugation at 150,000 × g for 19 h at 4°C, 24 fractions of 500 µL were then collected. Each fraction was divided into aliquots before storage at −80°C before further analysis. Sucrose density was measured for each fraction using a refractometer (Carl Zeiss, 47729), and appeared to be almost similar for both C- and HTC fractions from 1 to 24; linear regression gave equivalent coefficients and R2 superior to 0.98.
Dynamic Light Scattering (DLS) analysis
Particle diameters were measured by DLS (NanoZS, Malvern) with a 633 nm laser. Measurements were taken on samples diluted 1:100 (v:v) in PBS1x using cuvette (ZEN0040, Malvern). The viscosity of PBS1x is 0.87 cP and the refractive indices is 1.33. The refractive index of the particles was taken to be 1.52. Data were recorded as an average of 13 five-second acquisitions. Measurements were performed in triplicate at 25 °C. Recorded data were analysed in number with the Zetasizer software which also calculated the polydispersity index of the samples (ranging from 0 for a perfectly monodisperse homogeneous sample to 1 for a highly polydisperse heterogeneous sample).
Transmission Electron Microscopy (TEM) ultrastructural analysis
L. lactis bacteria were transferred to aluminium sample holders and cryoimmobilized immediately using a Leica High-Pressure Machine (HPM 100, Leica Microsystems, Vienna, Austria), and then transferred to liquid nitrogen. Samples were then freeze substituted in a Leica AFS system (Leica Microsystems, Vienna, Austria) with 1% OsO4 in anhydrous acetone with 1% glutaraldehyde, and 1% water at –90°C for 1 day, followed by slow warming to room temperature over a period of 7 days. After rinsing in several acetone washes, samples were then gradually infiltrated with mixtures of acetone/epoxy resin, and pure epoxy resin (EMbed 812 resin kit, Electron Microscopy Sciences, Hatfield, United States) for 31 hours. Samples were embedded in fresh Epon and polymerized at 60°C for 48 h. Ultrathin sections (90 nm) were cut on a Reichert Ultracut E ultramicrotome (Leica, Rueil-Malmaison, France), examined in transmission electron microscope (HITACHI H7800, Japan) operating at 80 kV and photographed with an AMT nanosprint 43 camera (AMT, Woburn, USA) on the DIMACELL platform (INRAE, Dijon, France).
Immuno-electron microscopy (IEM)
For immunolabeling of high-pressure frozen samples, the freeze substitution medium consisted of anhydrous acetone containing 0.2% uranyl acetate in the AFS unit as described above at –90°C for 4 days, followed by slow warming to -50°C over a period of 2 days. After rinsing in several acetone washes, samples were infiltrated in Lowicryl® HM20 resin (MonoStep HM20 resin, Electron Microscopy Sciences, Hatfield, United States) at -50°C, polymerized under UV light, and subsequently sectioned. Ultrathin sections (82 nm) were cut as above and were collected onto carbon-collodion-coated 200-mesh grids. A solution of caveolin antibody diluted at 1/75e and of a goat anti-mouse conjugated with 5-nm colloidal gold diluted 1/25e (secondary antibody) were successively applied prior to TEM observations. These observations were carried out using an electron microscope (HITACHI H7800, Japan) as described above.
Negative staining electron microscopy
Five μL of membrane fraction sample was placed on an effluved carbon formwar grid and allowed to rest for 20 min before blotting with filter paper. Samples were negative stained with commercial solution (Uranyless EMS, USA) during 3 min before blotting and air drying. Transmission electron microscopy (TEM) images were taken with a Hitachi H7800 at an acceleration voltage of 100 kV and AMT camera.