Ahmad I, Cheng Z, Meng H, Liu T, Nan W, Khan M, Khan A (2013) Effect of intercropped garlic (Allium sativum) on chlorophyl. Pak J Bot 45:1889–1896
Bokulich NA et al (2013) Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature methods 10:57–59
Calonego JC, Rosolem CA (2010) Soybean root growth and yield in rotation with cover crops under chiseling and no-till European. Journal of Agronomy 33:242–249
Cole JR et al (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis Nucleic acids research 37:D141-D145
Cole JR et al (2014) Ribosomal Database Project: data and tools for high throughput rRNA. analysis Nucleic acids research 42:D633–D642
D’Acunto L, Andrade JF, Poggio SL, Semmartin M (2018) Diversifying crop rotation increased metabolic soil diversity and activity of the microbial community Agriculture. Ecosystems Environment 257:159–164
Duangmal K, Poomthongdee N, Pathom-aree W, Takè A, Thamchaipenet A, Matsumoto A, Takahashi Y (2014) Allokutzneria oryzae sp. nov., isolated from rhizospheric soil of Oryza sativa. L International journal of systematic evolutionary microbiology 64:3559–3564
el Zahar Haichar F et al (2008) Plant host habitat and root exudates shape soil bacterial community structure. ISME J 2:1221–1230
Emmert EA, Handelsman J (1999) Biocontrol of plant disease: a (Gram-) positive perspective FEMS. Microbiology letters 171:1–9
Fierer N, Bradford MA, Jackson RB (2007) Toward an ecological classification of soil bacteria Ecology 88:1354–1364
Fu H, Zhang G, Zhang F, Sun Z, Geng G, Li T (2017) Effects of continuous tomato monoculture on soil microbial properties and enzyme activities in a solar greenhouse Sustainability 9:317
Ghimire R, Norton JB, Stahl PD, Norton U (2014) Soil microbial substrate properties and microbial community responses under irrigated organic and reduced-tillage crop and forage production systems. PloS one 9:e103901
González-Chávez MdCA, Aitkenhead-Peterson JA, Gentry TJ, Zuberer D, Hons F, Loeppert R (2010) Soil microbial community, C, N, and P responses to long-term tillage and crop rotation. Soil Tillage Res 106:285–293
Huang W, Chen X, Wang K, Chen J, Zheng B, Jiang X (2019) Comparison among the microbial communities in the lake, lake wetland, and estuary sediments of a plain. river network Microbiologyopen 8:e00644
Jiang X, Wright AL, Wang X, Liang F (2011) Tillage-induced changes in fungal and bacterial biomass associated with soil aggregates: a long-term field study in a subtropical rice soil in China. Appl Soil Ecol 48:168–173
Lange M et al (2015) Plant diversity increases soil microbial activity and soil carbon storage. Nature communications 6:1–8
Lee S, Yeo I-Y, Sadeghi AM, McCarty GW, Hively WD, Lang MW (2016) Impacts of watershed characteristics and crop rotations on winter cover crop nitrate-nitrogen uptake capacity within agricultural watersheds in the Chesapeake Bay region PloS one 11:e0157637
Li G-j, Xu Z-h, Benoit F (2001) The application of polyurethane ether foam (PUR) to soilless culture as an reusable and environmental sound substrate. Acta Agriculturae Zhejiangensis 13:61–66
Li T et al (2017) Changes in soil bacterial community structure as a result of incorporation of Brassica plants compared with continuous planting eggplant and chemical disinfection in greenhouses PloS one 12:e0173923
LI W-h LIU, Q-z, Peng C (2018) Effect of long-term continuous cropping of strawberry on soil bacterial community structure and diversity. Journal of integrative agriculture 17:2570–2582
Liu X, Zhang J, Gu T, Zhang W, Shen Q, Yin S, Qiu H (2014) Microbial community diversities and taxa abundances in soils along a seven-year gradient of potato monoculture using high throughput pyrosequencing approach. PloS one 9:e86610
Lozupone C, Hamady M, Knight R (2006) UniFrac–an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinform 7:371
Lyu J et al (2020) Effects of Different Vegetable Rotations on Fungal Community Structure in Continuous Tomato Cropping Matrix in Greenhouse Frontiers in Microbiology 11
Mendes R et al (2011) Deciphering the rhizosphere microbiome for disease-suppressive. bacteria Science 332:1097–1100
Nacke H et al (2011) Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils. PloS one 6:e17000
Navarro-Noya YE et al (2013) Relative impacts of tillage, residue management and crop-rotation on soil bacterial communities in a semi-arid agroecosystem. Soil Biol Biochem 65:86–95
Oksanen J et al (2016) vegan: Community Ecology Package. R package version 2.4-3 Vienna: R Foundation for Statistical Computing[Google Scholar]
Postma-Blaauw MB, de Goede RGM, Bloem J, Faber JH, Brussaard L (2010) Soil biota community structure and abundance under agricultural intensification and extensification Ecology 91:460–473
Qi M, Liu Y, Zhou L, Li T, Fan Y, Zhang K (2011) Regulation of calcium on photosynthesis of tomato leaves under sub-high temperature stress. Scientia Agricultura Sinica 44:531–537
Qin S, Yeboah S, Xu X, Liu Y, Yu B (2017) Analysis on fungal diversity in rhizosphere soil of continuous cropping potato subjected to different furrow-ridge mulching managements. Frontiers in microbiology 8:845
Qiu R, Song J, Du T, Kang S, Tong L, Chen R, Wu L (2013) Response of evapotranspiration and yield to planting density of solar greenhouse grown tomato in northwest China. Agric Water Manag 130:44–51
Rognes T, Flouri T, Nichols B, Quince C, Mahé F (2016) VSEARCH: a versatile open source tool. for metagenomics PeerJ 4:e2584
Schloss PD et al (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537–7541
Shiomi Y, Nishiyama M, Onizuka T, Marumoto T (1999) Comparison of bacterial community structures in the rhizoplane of tomato plants grown in soils suppressive and conducive towards bacterial wilt. Appl Environ Microbiol 65:3996–4001
Suhui L, Jinqiang X, Hui W, Qingtao L, Zheng X (2016) Effect of Garlic Straw on Physical and Chemical Characteristics of Continuous Cropping Soil and Root Activity of Tomato in Solar Greenhouse Agricultural Science & Technology 17
Tian-lai L (2005) Current Situation and Prospects of Green House Industry Development in China [J]. Journal of Shenyang Agricultural University 2:131–138
Tiemann L, Grandy A, Atkinson E, Marin-Spiotta E, McDaniel M (2015) Crop rotational diversity enhances belowground communities and functions in an agroecosystem. Ecology letters 18:761–771
Venter ZS, Jacobs K, Hawkins H-J (2016) The impact of crop rotation on soil microbial diversity: A meta-analysis. Pedobiologia 59:215–223
Wang C et al (2018) Bacterial communities and their predicted functions explain the sediment nitrogen changes along with submerged macrophyte restoration. Microbial ecology 76:625–636
WEN X-y, Dubinsky E, Yao W, Rong Y, Fu C (2016) Wheat, maize and sunflower cropping systems selectively influence bacteria community structure and diversity in their and succeeding crop's rhizosphere. Journal of integrative agriculture 15:1892–1902
Williams AS (2015) The dynamic interaction between microbial biodiversity, biogeochemical activity and sedimentary geomorphology in the Severn Estuary. Cardiff University
Xiong W et al (2015) Different continuous cropping spans significantly affect microbial community membership and structure in a vanilla-grown soil as revealed by deep pyrosequencing. Microbial ecology 70:209–218
Zhang J, Kobert K, Flouri T, Stamatakis A (2014) PEAR: a fast and accurate Illumina Paired-End reAd. mergeR Bioinformatics 30:614–620
Zhao J, Zhang R, Xue C, Xun W, Sun L, Xu Y, Shen Q (2014) Pyrosequencing reveals contrasting soil bacterial diversity and community structure of two main winter wheat cropping systems in. China Microbial ecology 67:443–453
Zheng X, Wang Z, Zhu Y, Wang J, Liu B (2020) Effects of a microbial restoration substrate on plant growth and rhizosphere bacterial community in a continuous tomato cropping. greenhouse Scientific reports 10:1–11
Zhou X, Liu J, Wu F (2017) Soil microbial communities in cucumber monoculture and rotation systems and their feedback effects on cucumber seedling growth. Plant Soil 415:507–520
Zhou X, Yu G, Wu F (2011) Effects of intercropping cucumber with onion or garlic on soil enzyme activities, microbial communities and cucumber yield European. Journal of Soil Biology 47:279–287
Zhu P, Wang Y, Shi T, Zhang X, Huang G, Gong J (2018) Intertidal zonation affects diversity and functional potentials of bacteria in surface sediments: A case study of the Golden Bay mangrove. China Applied Soil Ecology 130:159–168