Paraffin sections preparation
The tissue samples fixed in 4% paraformaldehyde were rinsed with running water, followed by dehydration in different concentrations of alcohol and soaking in xylene and paraffin, and tissues were embedded in liquid paraffin. Following solidification, paraffin-embedded tissue samples were cut into 5 μm-thick sections using a rotary microtome (RM2235, Leica Biosystems, Buffalo Grove, IL, USA). Finally, all paraffin sections were stored at 4℃ for further research
TUNEL cell apoptosis was detected
The small intestine samples were fixed with 4% paraformaldehyde overnight and washed with water. After paraffin embedding, 5 μm-thick sections were obtained. Paraffin sections were routinely dewaxed, hydrated and soaked in distilled water and PBS for 5 min each. The tissues were treated with a working solution of protease K (15 μg/mL, pH 7.4) at 37℃ for 20 min and washed with PBS 5 times for 5 min each time. 50 μL of TUNEL reaction mixture (TdT: Fluorescein labeled dUTP =1:9) was added, while 50 μL of fluorescein-labeled dUTP was added to the negative control group, and the reaction was conducted in a dark wet box at 37℃ for 1 h. The tissues were washed with PBS 3 times (5 min/ time). 50 μL transforming agent POD(converter-POD).he mixture was allowed to react in the dark wet box at 37℃ for 30 min. After washing with PBS 3 times, DAB substrate 50 μL was added, and a color reaction was performed at room temperature. Hematoxylin redyeing, anti-blue tap water, conventional dehydration transparent sealing. Microscope observation and photography. The results of cell apoptosis were analyzed, and the apoptosis rate was calculated using the following formula:
Immunohistochemistry
The paraffin sections (5 μm-thick) were deparaffinized in xylene, rehydrated with graded ethanols, and washed with water. Antigen retrieval was performed by microwaving the sections in 10 mM sodium citrate buffer (pH 6.0) and cooling them to room temperature. The endogenous horseradish peroxidase activity was inhibited with 3% H2O2 for 15 min. After the nonspecific binding was blocked with 10% horse serum at 37 °C for 1 h, the sections were incubated with primary antibody at 4 °C overnight. The primary antibodies used in this study include the mouse anti-Bcl-2 antibody (1:20; sc-7382, Santa Cruz Biotechnology (Shanghai) Co., LTD. China), and the mouse anti-Bax antibody (1:500; ab77566, Ai Bo Kang (Shanghai) Trading Co., LTD, China), and the mouse anti-LC3B antibody (1:200; ab229327, Ai Bo Kang (Shanghai) Trading Co., LTD, China), and the mouse anti-PINK (ab137361, Ai Bo Kang (Shanghai) Trading Co., LTD, China), and the mouse anti-Parkin (bs-23687R, Beijing Boaosen Biotechnology Co. LTD, China). The sections were then incubated with a biotin-labeled goat anti-mouse IgG antibody (1:1000; ab6789, Abcam) and a streptavidin-conjugated HRP complex (SP9002, Zhongshan Golden Bridge, Beijing, P. R. China). Finally, the signals were visualized with the DAB Horseradish Peroxidase Color Development Kit (ZLI9018, Zhongshan Golden Bridge) and counterstained with hematoxylin.
Total RNA extraction and reverse transcription
25 mg of the small intestine samples were put into a 1.5 mL centrifuge tube, and 600 μL RNAiso Plus was added for ice homogenization. After homogenization, the samples were placed on ice for further lysis for 5 min and centrifuged at 13 600×g at 4℃ for 5 min. The uncleaved tissue was deposited at the bottom of the tube. 500 μL of the upper liquid was transferred to a new 1.5 mL centrifuge tube. 1/5 of the homogenate lysed by chloroform (100 μL) was added and shaken vigorously 60-80 times until the solution turned milky white. After the mixture was allowed to stand for 2 min, centrifugation was conducted at 13 600×g for 15 min at 4℃. 260-280 μL of the upper liquid was placed into a new 1.5 mL centrifuge tube, and isopropyl alcohol was added and mixed thoroughly. The mixture was allowed to stand at room temperature for 10 min and centrifuged at 16 000×g at 4℃ for 10 min. The supernatant was discarded, and the precipitate was retained; 750 μL 75% ethanol was added, followed by centrifugation as described above. The RNA deposit was allowed to dry at room temperature. After precipitation and drying, it was dissolved in 20 μL DEPC water. The concentration of the RNA solution was determined. When the concentration was less than 500 ng/μL, 20 μL was transferred into a new 1.5 mL centrifuge tube. Digestion of the mixed genomic DNA in the RNA solution in the previous step was conducted using the following:
After mixing, the mixture was digested at 37℃ for 30 min. 270 μL DEPC water, 150 μL of each saturated phenol solution and chloroform were added to the digested solution, shaken vigorously, and allowed to stand at room temperature for 2 min, followed by centrifugation at 13 600×g for 15 min at 4℃. 320 μL of the upper layer solution was added to a new 1.5 mL centrifuge tube, followed by 890 μL cold ethanol (precooled at -20℃) and 35.5 μL 3 M sodium acetate (NaAc), mixed, and overnight at -80℃. On the second day, the RNA solution that was deposited overnight was centrifuged at 4℃ for 15 min at 13 600×g. After discarding the supernatant, 750 μL of 75% ethanol was added for centrifugation at 16 000×g for 10 min at 4℃. The supernatant was discarded and centrifuged for 3 min under the same conditions. After ethanol volatilization, 10 μL DEPC water was added to dissolve the RNA. Finally, the concentration and purity of RNA were measured. The RNA solution was diluted to 62.5 ng/μL for reverse transcription. Reverse transcription reaction conditions were as follows: 37℃, 15 min; 85℃, 5 s. 20 μL of sterilized water was added to get the cDNA template and stored at 4℃ for later use. The reverse transcription reaction system consisted of the following:
Reagent
|
Dose
|
5×PrimeScriptTM RT Enzyme Mix I
|
2 μL
|
RNA fluid (62.5 ng/uL)
|
8 μL
|
Real-time fluorescence quantitative PCR
mRNA sequences of required genes were retrieved from Genbank. Primer 6.0 software was used to design primers, and the best primer sequences were selected after comparison and sent to Guangzhou BGI Technology Co., LTD for synthesis. The primer series used are shown in Table 1 and 2. Chama SYBR qPCR Master Mix kit was used in this test. According to the manufacturer's instructions, the reaction system was set as follows:
Reagent
|
Volume
|
2×SYBR®primix Ex TaqTMII
|
5 μL
|
Upstream primer (4 μM)
|
1 μL
|
Downstream primer (4 μM)
|
1 μL
|
50×ROX Reference Dye 1
|
0.2 uL
|
CDNA template
|
2.8 uL
|
The reaction conditions were pre-denaturation at 95℃ for 10 s, 40 cycles at 95℃ for 5 s, and annealing at 60℃ for 35 s. After the test, the CT values were derived for analysis. The relative expression differences among genes were analyzed by 2-∆ the CT method.
Table 1 The primer sequences of the target gene
Gene
|
Primer sequence
|
Accession number
|
Product length
|
Bax
|
F:GGCCCTTTTGCTTCAGGGTT
R:CAGACACTCGCTCAGCTTCT
|
XM_018062750.1
|
121
|
Bcl-2
|
F:GAGTTCGGAGGGGTCATGTG
R:TACAGCTCCACAAAGGCGTC
|
NM_001314213.1
|
152
|
β-actin
|
F:CTCTTCCAGCCTTCCTTCCT
R:GGGCAGTGATCTCTTTCTGC
|
NM_001314342.1
|
177
|
Table 2 The primer sequences of the target gene
Gene
|
Primer sequence
|
Accession number
|
Product length
|
LC3B
|
F:AGAAGGCGCTTACAGCTCAATGC
R:ACTTCACAAATCGGAGTGGACACAC
|
XM_018061829.1
|
92
|
PINK1
|
F: TCATCCAGCGAAGCCATCTTTAGC
R: TCCCTTGGGTCTTCCGTGAGTG
|
XM_018055041.1
|
108
|
Parkin
|
F:GCATAACGTGTACGGACATCAGGAG
R:CAGGTGGAAGCAGTCTAAGCAGATC
|
XM_018053444.1
|
86
|
β-actin
|
F:CTCTTCCAGCCTTCCTTCCT
R:GGGCAGTGATCTCTTTCTGC
|
NM_001314342.1
|
177
|
Western blot analysis
50 mg of the small intestine samples were frozen at -80℃, and 1 mL of lysate was added and homogenized on ice with a homogenizer. 500 μL tissue homogenate was transferred into a 1.5 mL centrifuge tube, and 1 mL of extraction reagent was added and mixed homogeneously. After allowing the mixture to stand at 4ºC for 10 min, it was centrifuged at 10 000×g for 10 min at 4℃; the solution was divided into upper and lower phases, the intermediate protein-membrane was retained, the upper and lower liquids were discarded, the tube mouth was opened, and the precipitation was dried at room temperature. An appropriate volume of 2% SDS solution was added to the mixture and boiled at 95℃ for 10 min, and allowed to stand at room temperature for 30 min. The protein supernatant was centrifuged at 12 000 RPM for 5 min. The protein concentration was determined by the BCA method and a protein loading buffer was added for backup. 8% gel was selected according to the molecular weight of the protein (30~100 kD). The proteins were separated by SDS polyacrylamide gel electrophoresis and blotted onto wet nitrocellulose membrane. PVDF membrane was sealed with 5% skim milk powder solution at room temperature for 2 h. After incubation with the primary antibody (diluted with 5% bovine serum albumin solution, with dilution ratios of Bax, Bcl-2 and β-actin of 1:1,000, 1:500 and 1:5,000, respectively) overnight at 4℃, the proteins were washed with TBST 3 times, for 10 min each time and incubated with secondary antibodies (Bax, Bcl-2 and β-actin diluted with 2% skim milk powder solution, with corresponding dilution ratios of 1:5,000, 1:2,000 and 1:10,000) at room temperature for 2 h, and washed with TBST 3 times. ECL luminescent solution was added for development. The experiment was repeated 3 times, and the results were analyzed by Image J software. The relative expression levels were calculated using β-actin as the internal reference.
Transmission electron microscope analysis
The sample was fixed with 2.5% glutaraldehyde and washed with PBS buffer 3 times. Then it was fixed with 1% osmium at 4℃ for 2 h and washed with PBS buffer 3 times for 10 min each time. The sample was dehydrated with graded ethanols (30%, 50%, 70%, 90%, and 100% ethanol) for 10 min and treated with 100% ethanol twice. The tissues were embedded with Epon812 epoxy resin and cured at 37℃, 45℃, and 65℃. Tissue slices were obtained and stained with uranium dioxane acetate at room temperature for 30 min. The tissue slices were then cleaned and shaken dry with deionized water, stained with lead citrate for 8 min, washed with deionized water and dried. The results were observed and photographed under transmission electron microscopy.
Statistical analysis
SPSS 23.0 software was used for one-way ANOVA analysis of the data obtained, and GraphPad Prism 8.0.2 software was used for mapping. The expression differences in genes and proteins at different transportation times were analyzed, and the data of each group were expressed as mean ± standard deviation. A P-value < 0.05 was statistically significant, while a P-value < 0.01 was highly statistically significant.